RNA–Protein interactions for RNA: ENST00000459667.1

VARS-218, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 793 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-218ENST00000459667 CDC42BPBQ9Y5S2 1711 aa32.98■■■□□ 2.87
VARS-218ENST00000459667 EHBP1L1Q8N3D4 1523 aa32.96■■■□□ 2.87
VARS-218ENST00000459667 CDC42BPAQ5VT25 1732 aa32.94■■■□□ 2.86
VARS-218ENST00000459667 SCAPERQ9BY12 1400 aa32.94■■■□□ 2.86
VARS-218ENST00000459667 AEBP2Q6ZN18 517 aaPredicted RBP32.92■■■□□ 2.86
VARS-218ENST00000459667 TIAM1Q13009 1591 aa32.92■■■□□ 2.86
VARS-218ENST00000459667 POGZQ7Z3K3 1410 aa32.89■■■□□ 2.86
VARS-218ENST00000459667 ZMYM4Q5VZL5 1548 aa32.88■■■□□ 2.85
VARS-218ENST00000459667 KDM4FA0A1W2PPD8 638 aa32.86■■■□□ 2.85
VARS-218ENST00000459667 GPATCH8Q9UKJ3 1502 aaKnown RBP32.86■■■□□ 2.85
VARS-218ENST00000459667 CCNB3Q8WWL7 1395 aa32.83■■■□□ 2.85
VARS-218ENST00000459667 ARHGEF40Q8TER5 1519 aa32.83■■■□□ 2.85
VARS-218ENST00000459667 ABCC1P33527 1531 aa32.81■■■□□ 2.84
VARS-218ENST00000459667 SUPT6HQ7KZ85 1726 aaKnown RBP32.79■■■□□ 2.84
VARS-218ENST00000459667 ZNF518AQ6AHZ1 1483 aa32.79■■■□□ 2.84
VARS-218ENST00000459667 MAP3K1Q13233 1512 aa32.78■■■□□ 2.84
VARS-218ENST00000459667 ZFYVE16Q7Z3T8 1539 aa32.78■■■□□ 2.84
VARS-218ENST00000459667 MAGI2Q86UL8 1455 aa32.78■■■□□ 2.84
VARS-218ENST00000459667 ITSN2Q9NZM3 1697 aa32.77■■■□□ 2.84
VARS-218ENST00000459667 SAMD9LQ8IVG5 1584 aa32.75■■■□□ 2.83
VARS-218ENST00000459667 LRRC9Q6ZRR7 1453 aa32.75■■■□□ 2.83
VARS-218ENST00000459667 ZNF777Q9ULD5 760 aaPredicted RBP32.75■■■□□ 2.83
VARS-218ENST00000459667 KDM5CP41229 1560 aa32.75■■■□□ 2.83
VARS-218ENST00000459667 ARHGEF12Q9NZN5 1544 aa32.74■■■□□ 2.83
VARS-218ENST00000459667 CFDP1Q9UEE9 299 aaPredicted RBP32.74■■■□□ 2.83
VARS-218ENST00000459667 YEATS2Q9ULM3 1422 aa32.74■■■□□ 2.83
VARS-218ENST00000459667 NCOA2Q15596 1464 aa32.74■■■□□ 2.83
VARS-218ENST00000459667 AFAP1Q8N556 730 aa32.71■■■□□ 2.83
VARS-218ENST00000459667 TRAPPC8Q9Y2L5 1435 aa32.69■■■□□ 2.82
VARS-218ENST00000459667 SYCP2Q9BX26 1530 aa32.68■■■□□ 2.82
VARS-218ENST00000459667 HECW2Q9P2P5 1572 aa32.67■■■□□ 2.82
VARS-218ENST00000459667 PLEKHH2Q8IVE3 1493 aa32.66■■■□□ 2.82
VARS-218ENST00000459667 APLP2Q06481 763 aa32.64■■■□□ 2.82
VARS-218ENST00000459667 ARID4BQ4LE39 1312 aaPredicted RBP32.64■■■□□ 2.82
VARS-218ENST00000459667 KANK4Q5T7N3 995 aaPredicted RBP32.64■■■□□ 2.82
VARS-218ENST00000459667 KIAA1107Q9UPP5 1409 aa32.62■■■□□ 2.81
VARS-218ENST00000459667 MYT1LQ9UL68 1186 aa32.61■■■□□ 2.81
VARS-218ENST00000459667 MLH3Q9UHC1 1453 aa32.61■■■□□ 2.81
VARS-218ENST00000459667 ATP10AO60312 1499 aa32.6■■■□□ 2.81
VARS-218ENST00000459667 BCORL1Q5H9F3 1711 aa32.6■■■□□ 2.81
VARS-218ENST00000459667 SIGLEC1Q9BZZ2 1709 aa32.58■■■□□ 2.81
VARS-218ENST00000459667 HNRNPMP52272 730 aaKnown RBP eCLIP32.58■■■□□ 2.81
VARS-218ENST00000459667 C9orf84Q5VXU9 1444 aa32.58■■■□□ 2.81
VARS-218ENST00000459667 ZNF644Q9H582 1327 aaPredicted RBP32.56■■■□□ 2.8
VARS-218ENST00000459667 DIP2CQ9Y2E4 1556 aa32.56■■■□□ 2.8
VARS-218ENST00000459667 ADAMTSL3P82987 1691 aa32.56■■■□□ 2.8
VARS-218ENST00000459667 ABCA6Q8N139 1617 aa32.55■■■□□ 2.8
VARS-218ENST00000459667 KIDINS220Q9ULH0 1771 aa32.53■■■□□ 2.8
VARS-218ENST00000459667 CAMSAP2Q08AD1 1489 aa32.51■■■□□ 2.79
VARS-218ENST00000459667 SPAG9O60271 1321 aaKnown RBP32.49■■■□□ 2.79
VARS-218ENST00000459667 MBD5Q9P267 1494 aa32.48■■■□□ 2.79
VARS-218ENST00000459667 MADDQ8WXG6 1647 aa32.48■■■□□ 2.79
VARS-218ENST00000459667 REREQ9P2R6 1566 aa32.47■■■□□ 2.79
VARS-218ENST00000459667 MYOM3Q5VTT5 1437 aa32.46■■■□□ 2.79
VARS-218ENST00000459667 ATP7AQ04656 1500 aa32.46■■■□□ 2.79
VARS-218ENST00000459667 INO80Q9ULG1 1556 aaPredicted RBP32.45■■■□□ 2.79
VARS-218ENST00000459667 MLECQ14165 292 aa32.41■■■□□ 2.78
VARS-218ENST00000459667 MIA2Q96PC5 1412 aa32.4■■■□□ 2.78
VARS-218ENST00000459667 PTPRMP28827 1452 aa32.39■■■□□ 2.78
VARS-218ENST00000459667 CCDC141Q6ZP82 1450 aa32.39■■■□□ 2.78
VARS-218ENST00000459667 RIMS1Q86UR5 1692 aaKnown RBP32.39■■■□□ 2.78
VARS-218ENST00000459667 ARHGEF5Q12774 1597 aa32.36■■■□□ 2.77
VARS-218ENST00000459667 AGLP35573 1532 aa32.36■■■□□ 2.77
VARS-218ENST00000459667 FER1L4A9Z1Z3 1794 aa32.35■■■□□ 2.77
VARS-218ENST00000459667 RSPH4AQ5TD94 716 aa32.33■■■□□ 2.77
VARS-218ENST00000459667 RTEL1-TNFRSF6BF6WH68 1400 aa32.32■■■□□ 2.76
VARS-218ENST00000459667 ADGBQ8N7X0 1667 aa32.29■■■□□ 2.76
VARS-218ENST00000459667 A2MP01023 1474 aa32.28■■■□□ 2.76
VARS-218ENST00000459667 PLXNC1O60486 1568 aa32.28■■■□□ 2.76
VARS-218ENST00000459667 PTPN23Q9H3S7 1636 aa32.26■■■□□ 2.76
VARS-218ENST00000459667 FGD6Q6ZV73 1430 aa32.25■■■□□ 2.75
VARS-218ENST00000459667 TSPY4P0CV99 314 aa32.22■■■□□ 2.75
VARS-218ENST00000459667 TSPY10P0CW01 314 aa32.22■■■□□ 2.75
VARS-218ENST00000459667 MAST1Q9Y2H9 1570 aa32.19■■■□□ 2.74
VARS-218ENST00000459667 TCOF1Q13428 1488 aaKnown RBP32.19■■■□□ 2.74
VARS-218ENST00000459667 PLPPR3Q6T4P5 718 aa32.16■■■□□ 2.74
VARS-218ENST00000459667 DHX29Q7Z478 1369 aaKnown RBP32.14■■■□□ 2.74
VARS-218ENST00000459667 CROCC2H7BZ55 1655 aa32.13■■■□□ 2.73
VARS-218ENST00000459667 ESF1Q9H501 851 aaKnown RBP32.12■■■□□ 2.73
VARS-218ENST00000459667 DNMT1P26358 1616 aaKnown RBP32.11■■■□□ 2.73
VARS-218ENST00000459667 ABCC5O15440 1437 aa32.09■■■□□ 2.73
VARS-218ENST00000459667 SHANK2Q9UPX8 1470 aa32.09■■■□□ 2.73
VARS-218ENST00000459667 DAPK1P53355 1430 aa32.08■■■□□ 2.73
VARS-218ENST00000459667 CNTLNQ9NXG0 1405 aa32.08■■■□□ 2.73
VARS-218ENST00000459667 CEBPAP49715 358 aaPredicted RBP32.05■■■□□ 2.72
VARS-218ENST00000459667 GGT6Q6P531 493 aa32.05■■■□□ 2.72
VARS-218ENST00000459667 PPARGC1BQ86YN6 1023 aaKnown RBP32.04■■■□□ 2.72
VARS-218ENST00000459667 C3P01024 1663 aa32.04■■■□□ 2.72
VARS-218ENST00000459667 MROH2AA6NES4 1674 aa32.02■■■□□ 2.72
VARS-218ENST00000459667 KIF3BO15066 747 aa32.01■■■□□ 2.71
VARS-218ENST00000459667 FAM50AQ14320 339 aaKnown RBP32.01■■■□□ 2.71
VARS-218ENST00000459667 CLTCQ00610 1675 aaKnown RBP32.01■■■□□ 2.71
VARS-218ENST00000459667 LMTK3Q96Q04 1460 aa31.98■■■□□ 2.71
VARS-218ENST00000459667 PPP6R1Q9UPN7 881 aa31.97■■■□□ 2.71
VARS-218ENST00000459667 DUOX2Q9NRD8 1548 aa31.96■■■□□ 2.71
VARS-218ENST00000459667 EIF2AK4Q9P2K8 1649 aaKnown RBP31.95■■■□□ 2.71
VARS-218ENST00000459667 KIF15Q9NS87 1388 aa31.94■■■□□ 2.7
VARS-218ENST00000459667 PREX1Q8TCU6 1659 aa31.93■■■□□ 2.7
VARS-218ENST00000459667 ZMYM3Q14202 1370 aa31.93■■■□□ 2.7
VARS-218ENST00000459667 RNF17Q9BXT8 1623 aaKnown RBP31.91■■■□□ 2.7
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms