RNA–Protein interactions for RNA: ENST00000456506.2

LMCD1-206, Transcript of LIM and cysteine rich domains 1, humanhuman

TSL 2

Gene LMCD1, Length 1,059 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMCD1-206ENST00000456506 CDC42BPBQ9Y5S2 1711 aa19.98■□□□□ 0.79
LMCD1-206ENST00000456506 ARID4BQ4LE39 1312 aaPredicted RBP19.96■□□□□ 0.79
LMCD1-206ENST00000456506 ARHGEF12Q9NZN5 1544 aa19.95■□□□□ 0.78
LMCD1-206ENST00000456506 FMN1Q68DA7 1419 aa19.94■□□□□ 0.78
LMCD1-206ENST00000456506 KDM5CP41229 1560 aa19.94■□□□□ 0.78
LMCD1-206ENST00000456506 SCAPERQ9BY12 1400 aa19.93■□□□□ 0.78
LMCD1-206ENST00000456506 PREX1Q8TCU6 1659 aa19.93■□□□□ 0.78
LMCD1-206ENST00000456506 FBXO41Q8TF61 875 aa19.91■□□□□ 0.78
LMCD1-206ENST00000456506 PREX2Q70Z35 1606 aa19.9■□□□□ 0.78
LMCD1-206ENST00000456506 CDC42BPAQ5VT25 1732 aa19.88■□□□□ 0.77
LMCD1-206ENST00000456506 ATP10AO60312 1499 aa19.88■□□□□ 0.77
LMCD1-206ENST00000456506 ITSN2Q9NZM3 1697 aa19.87■□□□□ 0.77
LMCD1-206ENST00000456506 REREQ9P2R6 1566 aa19.87■□□□□ 0.77
LMCD1-206ENST00000456506 DIP2CQ9Y2E4 1556 aa19.87■□□□□ 0.77
LMCD1-206ENST00000456506 TROQ12816 1431 aaPredicted RBP19.87■□□□□ 0.77
LMCD1-206ENST00000456506 C9orf84Q5VXU9 1444 aa19.87■□□□□ 0.77
LMCD1-206ENST00000456506 ABCA6Q8N139 1617 aa19.87■□□□□ 0.77
LMCD1-206ENST00000456506 STRCQ7RTU9 1775 aa19.86■□□□□ 0.77
LMCD1-206ENST00000456506 ZNF518AQ6AHZ1 1483 aa19.85■□□□□ 0.77
LMCD1-206ENST00000456506 ARHGAP5Q13017 1502 aa19.84■□□□□ 0.77
LMCD1-206ENST00000456506 C3P01024 1663 aa19.82■□□□□ 0.76
LMCD1-206ENST00000456506 HSPA2P54652 639 aa19.82■□□□□ 0.76
LMCD1-206ENST00000456506 ABCC1P33527 1531 aa19.81■□□□□ 0.76
LMCD1-206ENST00000456506 KIDINS220Q9ULH0 1771 aa19.81■□□□□ 0.76
LMCD1-206ENST00000456506 UBTFP17480 764 aaKnown RBP19.81■□□□□ 0.76
LMCD1-206ENST00000456506 EFCAB2Q5VUJ9 269 aa19.81■□□□□ 0.76
LMCD1-206ENST00000456506 SETD1BQ9UPS6 1966 aaKnown RBP19.8■□□□□ 0.76
LMCD1-206ENST00000456506 CHIC1Q5VXU3 224 aa19.79■□□□□ 0.76
LMCD1-206ENST00000456506 EHMT2Q96KQ7 1210 aa19.78■□□□□ 0.76
LMCD1-206ENST00000456506 MLECQ14165 292 aa19.77■□□□□ 0.76
LMCD1-206ENST00000456506 MLH3Q9UHC1 1453 aa19.77■□□□□ 0.76
LMCD1-206ENST00000456506 CLIP1P30622 1438 aa19.76■□□□□ 0.75
LMCD1-206ENST00000456506 CDK11AQ9UQ88 783 aaPredicted RBP19.76■□□□□ 0.75
LMCD1-206ENST00000456506 CASKIN1Q8WXD9 1431 aa19.76■□□□□ 0.75
LMCD1-206ENST00000456506 CCDC18Q5T9S5 1454 aa19.75■□□□□ 0.75
LMCD1-206ENST00000456506 ATP1B4Q9UN42 357 aaPredicted RBP19.75■□□□□ 0.75
LMCD1-206ENST00000456506 AGLP35573 1532 aa19.75■□□□□ 0.75
LMCD1-206ENST00000456506 PLPPR3Q6T4P5 718 aa19.74■□□□□ 0.75
LMCD1-206ENST00000456506 AFAP1Q8N556 730 aa19.74■□□□□ 0.75
LMCD1-206ENST00000456506 SAMD9LQ8IVG5 1584 aa19.72■□□□□ 0.75
LMCD1-206ENST00000456506 TRAPPC8Q9Y2L5 1435 aa19.72■□□□□ 0.75
LMCD1-206ENST00000456506 MROH2AA6NES4 1674 aa19.7■□□□□ 0.74
LMCD1-206ENST00000456506 FYCO1Q9BQS8 1478 aa19.69■□□□□ 0.74
LMCD1-206ENST00000456506 CEBPAP49715 358 aaPredicted RBP19.69■□□□□ 0.74
LMCD1-206ENST00000456506 SUPT6HQ7KZ85 1726 aaKnown RBP19.65■□□□□ 0.74
LMCD1-206ENST00000456506 CERKQ8TCT0 537 aa19.64■□□□□ 0.73
LMCD1-206ENST00000456506 INO80Q9ULG1 1556 aaPredicted RBP19.64■□□□□ 0.73
LMCD1-206ENST00000456506 SYCP2Q9BX26 1530 aa19.63■□□□□ 0.73
LMCD1-206ENST00000456506 UHRF1BP1Q6BDS2 1440 aa19.63■□□□□ 0.73
LMCD1-206ENST00000456506 PLXNC1O60486 1568 aa19.61■□□□□ 0.73
LMCD1-206ENST00000456506 GPATCH8Q9UKJ3 1502 aaKnown RBP19.61■□□□□ 0.73
LMCD1-206ENST00000456506 CLTCQ00610 1675 aaKnown RBP19.6■□□□□ 0.73
LMCD1-206ENST00000456506 ZNF142P52746 1687 aaPredicted RBP19.58■□□□□ 0.72
LMCD1-206ENST00000456506 ATP7AQ04656 1500 aa19.57■□□□□ 0.72
LMCD1-206ENST00000456506 LTBP4Q8N2S1 1624 aa19.57■□□□□ 0.72
LMCD1-206ENST00000456506 ADGBQ8N7X0 1667 aa19.56■□□□□ 0.72
LMCD1-206ENST00000456506 PTPRTO14522 1441 aa19.56■□□□□ 0.72
LMCD1-206ENST00000456506 CNTLNQ9NXG0 1405 aa19.55■□□□□ 0.72
LMCD1-206ENST00000456506 MYO3AQ8NEV4 1616 aa19.54■□□□□ 0.72
LMCD1-206ENST00000456506 TIAM1Q13009 1591 aa19.53■□□□□ 0.72
LMCD1-206ENST00000456506 NCOA1Q15788 1441 aa19.52■□□□□ 0.72
LMCD1-206ENST00000456506 KIAA1107Q9UPP5 1409 aa19.52■□□□□ 0.72
LMCD1-206ENST00000456506 MYT1LQ9UL68 1186 aa19.52■□□□□ 0.72
LMCD1-206ENST00000456506 CAMSAP1Q5T5Y3 1602 aa19.51■□□□□ 0.71
LMCD1-206ENST00000456506 NPATQ14207 1427 aa19.51■□□□□ 0.71
LMCD1-206ENST00000456506 DMRT2Q9Y5R5 561 aa19.5■□□□□ 0.71
LMCD1-206ENST00000456506 PLEKHH2Q8IVE3 1493 aa19.48■□□□□ 0.71
LMCD1-206ENST00000456506 A2MP01023 1474 aa19.47■□□□□ 0.71
LMCD1-206ENST00000456506 HNRNPMP52272 730 aaKnown RBP eCLIP19.46■□□□□ 0.71
LMCD1-206ENST00000456506 EHBP1L1Q8N3D4 1523 aa19.46■□□□□ 0.71
LMCD1-206ENST00000456506 IQSEC2Q5JU85 1478 aa19.45■□□□□ 0.7
LMCD1-206ENST00000456506 MBD5Q9P267 1494 aa19.45■□□□□ 0.7
LMCD1-206ENST00000456506 SPAG9O60271 1321 aaKnown RBP19.45■□□□□ 0.7
LMCD1-206ENST00000456506 ZMYM3Q14202 1370 aa19.44■□□□□ 0.7
LMCD1-206ENST00000456506 CEP170BQ9Y4F5 1589 aaPredicted RBP19.44■□□□□ 0.7
LMCD1-206ENST00000456506 ZNF777Q9ULD5 760 aaPredicted RBP19.44■□□□□ 0.7
LMCD1-206ENST00000456506 PTPRKQ15262 1439 aa19.42■□□□□ 0.7
LMCD1-206ENST00000456506 ESF1Q9H501 851 aaKnown RBP19.41■□□□□ 0.7
LMCD1-206ENST00000456506 CCNB3Q8WWL7 1395 aa19.41■□□□□ 0.7
LMCD1-206ENST00000456506 POLR1AO95602 1720 aaPredicted RBP19.4■□□□□ 0.7
LMCD1-206ENST00000456506 CFDP1Q9UEE9 299 aaPredicted RBP19.39■□□□□ 0.69
LMCD1-206ENST00000456506 PLA2R1Q13018 1463 aa19.39■□□□□ 0.69
LMCD1-206ENST00000456506 TCOF1Q13428 1488 aaKnown RBP19.39■□□□□ 0.69
LMCD1-206ENST00000456506 DNMT1P26358 1616 aaKnown RBP19.38■□□□□ 0.69
LMCD1-206ENST00000456506 MTUS2Q5JR59 1369 aa19.38■□□□□ 0.69
LMCD1-206ENST00000456506 CEP162Q5TB80 1403 aa19.37■□□□□ 0.69
LMCD1-206ENST00000456506 RTEL1-TNFRSF6BF6WH68 1400 aa19.36■□□□□ 0.69
LMCD1-206ENST00000456506 ZNF644Q9H582 1327 aaPredicted RBP19.36■□□□□ 0.69
LMCD1-206ENST00000456506 SPATA31D1Q6ZQQ2 1576 aa19.35■□□□□ 0.69
LMCD1-206ENST00000456506 NEURL4Q96JN8 1562 aa19.32■□□□□ 0.68
LMCD1-206ENST00000456506 FAM135AQ9P2D6 1515 aa19.31■□□□□ 0.68
LMCD1-206ENST00000456506 ARHGEF5Q12774 1597 aa19.31■□□□□ 0.68
LMCD1-206ENST00000456506 NCKAP5LQ9HCH0 1330 aa19.3■□□□□ 0.68
LMCD1-206ENST00000456506 A2ML1A8K2U0 1454 aa19.3■□□□□ 0.68
LMCD1-206ENST00000456506 CAMSAP2Q08AD1 1489 aa19.3■□□□□ 0.68
LMCD1-206ENST00000456506 NCOA2Q15596 1464 aa19.3■□□□□ 0.68
LMCD1-206ENST00000456506 CCDC141Q6ZP82 1450 aa19.29■□□□□ 0.68
LMCD1-206ENST00000456506 PPP6R1Q9UPN7 881 aa19.29■□□□□ 0.68
LMCD1-206ENST00000456506 DHX29Q7Z478 1369 aaKnown RBP19.29■□□□□ 0.68
LMCD1-206ENST00000456506 GGT6Q6P531 493 aa19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms