RNA–Protein interactions for RNA: ENST00000456096.6

TVP23A-202, Transcript of trans-golgi network vesicle protein 23 homolog A, humanhuman

TSL 1 (best)

Gene TVP23A, Length 1,223 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TVP23A-202ENST00000456096 SIGLEC1Q9BZZ2 1709 aa27.62■■■□□ 2.01
TVP23A-202ENST00000456096 POGZQ7Z3K3 1410 aa27.62■■■□□ 2.01
TVP23A-202ENST00000456096 PCF11O94913 1555 aaKnown RBP27.6■■■□□ 2.01
TVP23A-202ENST00000456096 EFCAB2Q5VUJ9 269 aa27.6■■■□□ 2.01
TVP23A-202ENST00000456096 LMTK3Q96Q04 1460 aa27.59■■■□□ 2.01
TVP23A-202ENST00000456096 MYO5CQ9NQX4 1742 aa27.59■■■□□ 2.01
TVP23A-202ENST00000456096 PLPPR3Q6T4P5 718 aa27.58■■■□□ 2.01
TVP23A-202ENST00000456096 KIF14Q15058 1648 aa27.58■■■□□ 2.01
TVP23A-202ENST00000456096 MLECQ14165 292 aa27.56■■■□□ 2
TVP23A-202ENST00000456096 TROQ12816 1431 aaPredicted RBP27.54■■■□□ 2
TVP23A-202ENST00000456096 LRRIQ1Q96JM4 1722 aa27.53■■■□□ 2
TVP23A-202ENST00000456096 ATP10AO60312 1499 aa27.51■■□□□ 1.99
TVP23A-202ENST00000456096 CLIP1P30622 1438 aa27.5■■□□□ 1.99
TVP23A-202ENST00000456096 ARHGAP5Q13017 1502 aa27.48■■□□□ 1.99
TVP23A-202ENST00000456096 HSPA2P54652 639 aa27.48■■□□□ 1.99
TVP23A-202ENST00000456096 FBXO41Q8TF61 875 aa27.48■■□□□ 1.99
TVP23A-202ENST00000456096 FER1L4A9Z1Z3 1794 aa27.48■■□□□ 1.99
TVP23A-202ENST00000456096 AFAP1Q8N556 730 aa27.46■■□□□ 1.99
TVP23A-202ENST00000456096 C9orf84Q5VXU9 1444 aa27.46■■□□□ 1.99
TVP23A-202ENST00000456096 ZNF518AQ6AHZ1 1483 aa27.44■■□□□ 1.98
TVP23A-202ENST00000456096 ARHGEF12Q9NZN5 1544 aa27.42■■□□□ 1.98
TVP23A-202ENST00000456096 CASKIN1Q8WXD9 1431 aa27.41■■□□□ 1.98
TVP23A-202ENST00000456096 CDC42BPBQ9Y5S2 1711 aa27.41■■□□□ 1.98
TVP23A-202ENST00000456096 KDM5CP41229 1560 aa27.39■■□□□ 1.98
TVP23A-202ENST00000456096 MYT1LQ9UL68 1186 aa27.39■■□□□ 1.98
TVP23A-202ENST00000456096 CCDC18Q5T9S5 1454 aa27.37■■□□□ 1.97
TVP23A-202ENST00000456096 CEBPAP49715 358 aaPredicted RBP27.35■■□□□ 1.97
TVP23A-202ENST00000456096 PREX2Q70Z35 1606 aa27.34■■□□□ 1.97
TVP23A-202ENST00000456096 DIP2CQ9Y2E4 1556 aa27.32■■□□□ 1.96
TVP23A-202ENST00000456096 TRAPPC8Q9Y2L5 1435 aa27.31■■□□□ 1.96
TVP23A-202ENST00000456096 MLH3Q9UHC1 1453 aa27.31■■□□□ 1.96
TVP23A-202ENST00000456096 ABCC1P33527 1531 aa27.29■■□□□ 1.96
TVP23A-202ENST00000456096 ABCA6Q8N139 1617 aa27.29■■□□□ 1.96
TVP23A-202ENST00000456096 REREQ9P2R6 1566 aa27.27■■□□□ 1.96
TVP23A-202ENST00000456096 FYCO1Q9BQS8 1478 aa27.27■■□□□ 1.96
TVP23A-202ENST00000456096 PREX1Q8TCU6 1659 aa27.27■■□□□ 1.96
TVP23A-202ENST00000456096 CDC42BPAQ5VT25 1732 aa27.26■■□□□ 1.95
TVP23A-202ENST00000456096 ITSN2Q9NZM3 1697 aa27.26■■□□□ 1.95
TVP23A-202ENST00000456096 ZNF777Q9ULD5 760 aaPredicted RBP27.21■■□□□ 1.95
TVP23A-202ENST00000456096 AGLP35573 1532 aa27.2■■□□□ 1.94
TVP23A-202ENST00000456096 KIDINS220Q9ULH0 1771 aa27.2■■□□□ 1.94
TVP23A-202ENST00000456096 SETD1BQ9UPS6 1966 aaKnown RBP27.19■■□□□ 1.94
TVP23A-202ENST00000456096 CERKQ8TCT0 537 aa27.17■■□□□ 1.94
TVP23A-202ENST00000456096 GPATCH8Q9UKJ3 1502 aaKnown RBP27.16■■□□□ 1.94
TVP23A-202ENST00000456096 ESF1Q9H501 851 aaKnown RBP27.16■■□□□ 1.94
TVP23A-202ENST00000456096 UHRF1BP1Q6BDS2 1440 aa27.16■■□□□ 1.94
TVP23A-202ENST00000456096 C3P01024 1663 aa27.15■■□□□ 1.94
TVP23A-202ENST00000456096 SAMD9LQ8IVG5 1584 aa27.15■■□□□ 1.94
TVP23A-202ENST00000456096 HNRNPMP52272 730 aaKnown RBP eCLIP27.13■■□□□ 1.93
TVP23A-202ENST00000456096 STRCQ7RTU9 1775 aa27.12■■□□□ 1.93
TVP23A-202ENST00000456096 SYCP2Q9BX26 1530 aa27.11■■□□□ 1.93
TVP23A-202ENST00000456096 DMRT2Q9Y5R5 561 aa27.1■■□□□ 1.93
TVP23A-202ENST00000456096 SPAG9O60271 1321 aaKnown RBP27.1■■□□□ 1.93
TVP23A-202ENST00000456096 CFDP1Q9UEE9 299 aaPredicted RBP27.08■■□□□ 1.93
TVP23A-202ENST00000456096 CCNB3Q8WWL7 1395 aa27.06■■□□□ 1.92
TVP23A-202ENST00000456096 CNTLNQ9NXG0 1405 aa27.06■■□□□ 1.92
TVP23A-202ENST00000456096 KIAA1107Q9UPP5 1409 aa27.05■■□□□ 1.92
TVP23A-202ENST00000456096 MTUS2Q5JR59 1369 aa27.04■■□□□ 1.92
TVP23A-202ENST00000456096 PLEKHH2Q8IVE3 1493 aa27.02■■□□□ 1.92
TVP23A-202ENST00000456096 SUPT6HQ7KZ85 1726 aaKnown RBP27.02■■□□□ 1.92
TVP23A-202ENST00000456096 ATP7AQ04656 1500 aa27.01■■□□□ 1.91
TVP23A-202ENST00000456096 INO80Q9ULG1 1556 aaPredicted RBP26.97■■□□□ 1.91
TVP23A-202ENST00000456096 ZMYM3Q14202 1370 aa26.97■■□□□ 1.91
TVP23A-202ENST00000456096 ZNF644Q9H582 1327 aaPredicted RBP26.96■■□□□ 1.91
TVP23A-202ENST00000456096 MROH2AA6NES4 1674 aa26.96■■□□□ 1.91
TVP23A-202ENST00000456096 A2MP01023 1474 aa26.96■■□□□ 1.91
TVP23A-202ENST00000456096 PTPRTO14522 1441 aa26.96■■□□□ 1.91
TVP23A-202ENST00000456096 PLXNC1O60486 1568 aa26.95■■□□□ 1.9
TVP23A-202ENST00000456096 NPATQ14207 1427 aa26.93■■□□□ 1.9
TVP23A-202ENST00000456096 TIAM1Q13009 1591 aa26.92■■□□□ 1.9
TVP23A-202ENST00000456096 EHBP1L1Q8N3D4 1523 aa26.91■■□□□ 1.9
TVP23A-202ENST00000456096 GGT6Q6P531 493 aa26.91■■□□□ 1.9
TVP23A-202ENST00000456096 CLTCQ00610 1675 aaKnown RBP26.91■■□□□ 1.9
TVP23A-202ENST00000456096 NCOA1Q15788 1441 aa26.9■■□□□ 1.9
TVP23A-202ENST00000456096 CEP162Q5TB80 1403 aa26.89■■□□□ 1.89
TVP23A-202ENST00000456096 MBD5Q9P267 1494 aa26.88■■□□□ 1.89
TVP23A-202ENST00000456096 ADGBQ8N7X0 1667 aa26.86■■□□□ 1.89
TVP23A-202ENST00000456096 CAMSAP1Q5T5Y3 1602 aa26.86■■□□□ 1.89
TVP23A-202ENST00000456096 PTPRKQ15262 1439 aa26.82■■□□□ 1.88
TVP23A-202ENST00000456096 PPP6R1Q9UPN7 881 aa26.82■■□□□ 1.88
TVP23A-202ENST00000456096 LTBP4Q8N2S1 1624 aa26.82■■□□□ 1.88
TVP23A-202ENST00000456096 NCKAP5LQ9HCH0 1330 aa26.81■■□□□ 1.88
TVP23A-202ENST00000456096 RTEL1-TNFRSF6BF6WH68 1400 aa26.81■■□□□ 1.88
TVP23A-202ENST00000456096 MYO3AQ8NEV4 1616 aa26.79■■□□□ 1.88
TVP23A-202ENST00000456096 NCOA2Q15596 1464 aa26.78■■□□□ 1.88
TVP23A-202ENST00000456096 DHX29Q7Z478 1369 aaKnown RBP26.77■■□□□ 1.88
TVP23A-202ENST00000456096 ZNF142P52746 1687 aaPredicted RBP26.76■■□□□ 1.87
TVP23A-202ENST00000456096 CEP170BQ9Y4F5 1589 aaPredicted RBP26.75■■□□□ 1.87
TVP23A-202ENST00000456096 CAMSAP2Q08AD1 1489 aa26.74■■□□□ 1.87
TVP23A-202ENST00000456096 CCDC141Q6ZP82 1450 aa26.73■■□□□ 1.87
TVP23A-202ENST00000456096 KIF3BO15066 747 aa26.72■■□□□ 1.87
TVP23A-202ENST00000456096 PLA2R1Q13018 1463 aa26.72■■□□□ 1.87
TVP23A-202ENST00000456096 PKD2Q13563 968 aa26.71■■□□□ 1.87
TVP23A-202ENST00000456096 RSPH4AQ5TD94 716 aa26.71■■□□□ 1.87
TVP23A-202ENST00000456096 IQSEC2Q5JU85 1478 aa26.69■■□□□ 1.86
TVP23A-202ENST00000456096 TCOF1Q13428 1488 aaKnown RBP26.68■■□□□ 1.86
TVP23A-202ENST00000456096 ZNF335Q9H4Z2 1342 aaPredicted RBP26.68■■□□□ 1.86
TVP23A-202ENST00000456096 LOC105371045A0A1W2PR82 267 aa26.66■■□□□ 1.86
TVP23A-202ENST00000456096 FBXO31Q5XUX0 539 aaPredicted RBP26.66■■□□□ 1.86
TVP23A-202ENST00000456096 A2ML1A8K2U0 1454 aa26.65■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms