RNA–Protein interactions for RNA: ENST00000455548.2

SMPD4-214, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 3

Gene SMPD4, Length 547 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-214ENST00000455548 AEBP2Q6ZN18 517 aaPredicted RBP25.84■■□□□ 1.73
SMPD4-214ENST00000455548 CDC42BPBQ9Y5S2 1711 aa25.84■■□□□ 1.73
SMPD4-214ENST00000455548 CDC42BPAQ5VT25 1732 aa25.81■■□□□ 1.72
SMPD4-214ENST00000455548 SCAPERQ9BY12 1400 aa25.8■■□□□ 1.72
SMPD4-214ENST00000455548 EHBP1L1Q8N3D4 1523 aa25.8■■□□□ 1.72
SMPD4-214ENST00000455548 ZMYM4Q5VZL5 1548 aa25.78■■□□□ 1.72
SMPD4-214ENST00000455548 POGZQ7Z3K3 1410 aa25.77■■□□□ 1.72
SMPD4-214ENST00000455548 TIAM1Q13009 1591 aa25.77■■□□□ 1.72
SMPD4-214ENST00000455548 KDM4FA0A1W2PPD8 638 aa25.74■■□□□ 1.71
SMPD4-214ENST00000455548 ARHGEF40Q8TER5 1519 aa25.73■■□□□ 1.71
SMPD4-214ENST00000455548 CCNB3Q8WWL7 1395 aa25.73■■□□□ 1.71
SMPD4-214ENST00000455548 GPATCH8Q9UKJ3 1502 aaKnown RBP25.73■■□□□ 1.71
SMPD4-214ENST00000455548 MAGI2Q86UL8 1455 aa25.72■■□□□ 1.71
SMPD4-214ENST00000455548 ZNF518AQ6AHZ1 1483 aa25.71■■□□□ 1.71
SMPD4-214ENST00000455548 MAP3K1Q13233 1512 aa25.7■■□□□ 1.7
SMPD4-214ENST00000455548 ABCC1P33527 1531 aa25.69■■□□□ 1.7
SMPD4-214ENST00000455548 SUPT6HQ7KZ85 1726 aaKnown RBP25.69■■□□□ 1.7
SMPD4-214ENST00000455548 ZFYVE16Q7Z3T8 1539 aa25.68■■□□□ 1.7
SMPD4-214ENST00000455548 ITSN2Q9NZM3 1697 aa25.67■■□□□ 1.7
SMPD4-214ENST00000455548 KDM5CP41229 1560 aa25.65■■□□□ 1.7
SMPD4-214ENST00000455548 CFDP1Q9UEE9 299 aaPredicted RBP25.65■■□□□ 1.7
SMPD4-214ENST00000455548 LRRC9Q6ZRR7 1453 aa25.65■■□□□ 1.7
SMPD4-214ENST00000455548 SAMD9LQ8IVG5 1584 aa25.64■■□□□ 1.69
SMPD4-214ENST00000455548 ZNF777Q9ULD5 760 aaPredicted RBP25.63■■□□□ 1.69
SMPD4-214ENST00000455548 NCOA2Q15596 1464 aa25.62■■□□□ 1.69
SMPD4-214ENST00000455548 AFAP1Q8N556 730 aa25.62■■□□□ 1.69
SMPD4-214ENST00000455548 ARHGEF12Q9NZN5 1544 aa25.62■■□□□ 1.69
SMPD4-214ENST00000455548 YEATS2Q9ULM3 1422 aa25.62■■□□□ 1.69
SMPD4-214ENST00000455548 PLEKHH2Q8IVE3 1493 aa25.61■■□□□ 1.69
SMPD4-214ENST00000455548 HECW2Q9P2P5 1572 aa25.6■■□□□ 1.69
SMPD4-214ENST00000455548 APLP2Q06481 763 aa25.59■■□□□ 1.69
SMPD4-214ENST00000455548 TRAPPC8Q9Y2L5 1435 aa25.59■■□□□ 1.69
SMPD4-214ENST00000455548 SYCP2Q9BX26 1530 aa25.58■■□□□ 1.69
SMPD4-214ENST00000455548 KIAA1107Q9UPP5 1409 aa25.58■■□□□ 1.69
SMPD4-214ENST00000455548 ARID4BQ4LE39 1312 aaPredicted RBP25.58■■□□□ 1.69
SMPD4-214ENST00000455548 ATP10AO60312 1499 aa25.56■■□□□ 1.68
SMPD4-214ENST00000455548 MLH3Q9UHC1 1453 aa25.56■■□□□ 1.68
SMPD4-214ENST00000455548 BCORL1Q5H9F3 1711 aa25.55■■□□□ 1.68
SMPD4-214ENST00000455548 MYT1LQ9UL68 1186 aa25.54■■□□□ 1.68
SMPD4-214ENST00000455548 KANK4Q5T7N3 995 aaPredicted RBP25.53■■□□□ 1.68
SMPD4-214ENST00000455548 C9orf84Q5VXU9 1444 aa25.53■■□□□ 1.68
SMPD4-214ENST00000455548 ADAMTSL3P82987 1691 aa25.52■■□□□ 1.68
SMPD4-214ENST00000455548 HNRNPMP52272 730 aaKnown RBP eCLIP25.52■■□□□ 1.68
SMPD4-214ENST00000455548 DIP2CQ9Y2E4 1556 aa25.5■■□□□ 1.67
SMPD4-214ENST00000455548 KIDINS220Q9ULH0 1771 aa25.49■■□□□ 1.67
SMPD4-214ENST00000455548 SIGLEC1Q9BZZ2 1709 aa25.49■■□□□ 1.67
SMPD4-214ENST00000455548 ABCA6Q8N139 1617 aa25.48■■□□□ 1.67
SMPD4-214ENST00000455548 ZNF644Q9H582 1327 aaPredicted RBP25.47■■□□□ 1.67
SMPD4-214ENST00000455548 REREQ9P2R6 1566 aa25.47■■□□□ 1.67
SMPD4-214ENST00000455548 SPAG9O60271 1321 aaKnown RBP25.46■■□□□ 1.67
SMPD4-214ENST00000455548 CAMSAP2Q08AD1 1489 aa25.45■■□□□ 1.66
SMPD4-214ENST00000455548 MBD5Q9P267 1494 aa25.43■■□□□ 1.66
SMPD4-214ENST00000455548 MADDQ8WXG6 1647 aa25.43■■□□□ 1.66
SMPD4-214ENST00000455548 ATP7AQ04656 1500 aa25.42■■□□□ 1.66
SMPD4-214ENST00000455548 MYOM3Q5VTT5 1437 aa25.42■■□□□ 1.66
SMPD4-214ENST00000455548 INO80Q9ULG1 1556 aaPredicted RBP25.42■■□□□ 1.66
SMPD4-214ENST00000455548 MIA2Q96PC5 1412 aa25.39■■□□□ 1.66
SMPD4-214ENST00000455548 RSPH4AQ5TD94 716 aa25.38■■□□□ 1.65
SMPD4-214ENST00000455548 PTPRMP28827 1452 aa25.38■■□□□ 1.65
SMPD4-214ENST00000455548 CCDC141Q6ZP82 1450 aa25.38■■□□□ 1.65
SMPD4-214ENST00000455548 AGLP35573 1532 aa25.37■■□□□ 1.65
SMPD4-214ENST00000455548 RIMS1Q86UR5 1692 aaKnown RBP25.37■■□□□ 1.65
SMPD4-214ENST00000455548 ARHGEF5Q12774 1597 aa25.36■■□□□ 1.65
SMPD4-214ENST00000455548 MLECQ14165 292 aa25.36■■□□□ 1.65
SMPD4-214ENST00000455548 FER1L4A9Z1Z3 1794 aa25.36■■□□□ 1.65
SMPD4-214ENST00000455548 RTEL1-TNFRSF6BF6WH68 1400 aa25.35■■□□□ 1.65
SMPD4-214ENST00000455548 ADGBQ8N7X0 1667 aa25.32■■□□□ 1.64
SMPD4-214ENST00000455548 A2MP01023 1474 aa25.29■■□□□ 1.64
SMPD4-214ENST00000455548 PLXNC1O60486 1568 aa25.27■■□□□ 1.64
SMPD4-214ENST00000455548 PTPN23Q9H3S7 1636 aa25.27■■□□□ 1.64
SMPD4-214ENST00000455548 TSPY4P0CV99 314 aa25.27■■□□□ 1.64
SMPD4-214ENST00000455548 TSPY10P0CW01 314 aa25.27■■□□□ 1.64
SMPD4-214ENST00000455548 FGD6Q6ZV73 1430 aa25.26■■□□□ 1.63
SMPD4-214ENST00000455548 MAST1Q9Y2H9 1570 aa25.22■■□□□ 1.63
SMPD4-214ENST00000455548 TCOF1Q13428 1488 aaKnown RBP25.21■■□□□ 1.63
SMPD4-214ENST00000455548 DHX29Q7Z478 1369 aaKnown RBP25.2■■□□□ 1.63
SMPD4-214ENST00000455548 ESF1Q9H501 851 aaKnown RBP25.2■■□□□ 1.62
SMPD4-214ENST00000455548 CNTLNQ9NXG0 1405 aa25.17■■□□□ 1.62
SMPD4-214ENST00000455548 CROCC2H7BZ55 1655 aa25.17■■□□□ 1.62
SMPD4-214ENST00000455548 DNMT1P26358 1616 aaKnown RBP25.15■■□□□ 1.62
SMPD4-214ENST00000455548 SHANK2Q9UPX8 1470 aa25.15■■□□□ 1.62
SMPD4-214ENST00000455548 PLPPR3Q6T4P5 718 aa25.14■■□□□ 1.62
SMPD4-214ENST00000455548 MROH2AA6NES4 1674 aa25.12■■□□□ 1.61
SMPD4-214ENST00000455548 ABCC5O15440 1437 aa25.12■■□□□ 1.61
SMPD4-214ENST00000455548 DAPK1P53355 1430 aa25.12■■□□□ 1.61
SMPD4-214ENST00000455548 GGT6Q6P531 493 aa25.11■■□□□ 1.61
SMPD4-214ENST00000455548 PPP6R1Q9UPN7 881 aa25.11■■□□□ 1.61
SMPD4-214ENST00000455548 C3P01024 1663 aa25.1■■□□□ 1.61
SMPD4-214ENST00000455548 CEBPAP49715 358 aaPredicted RBP25.09■■□□□ 1.61
SMPD4-214ENST00000455548 SETD1BQ9UPS6 1966 aaKnown RBP25.08■■□□□ 1.61
SMPD4-214ENST00000455548 KIF3BO15066 747 aa25.08■■□□□ 1.61
SMPD4-214ENST00000455548 CLTCQ00610 1675 aaKnown RBP25.07■■□□□ 1.6
SMPD4-214ENST00000455548 FAM50AQ14320 339 aaKnown RBP25.06■■□□□ 1.6
SMPD4-214ENST00000455548 LMTK3Q96Q04 1460 aa25.05■■□□□ 1.6
SMPD4-214ENST00000455548 DUOX2Q9NRD8 1548 aa25.05■■□□□ 1.6
SMPD4-214ENST00000455548 EIF2AK4Q9P2K8 1649 aaKnown RBP25.04■■□□□ 1.6
SMPD4-214ENST00000455548 PREX1Q8TCU6 1659 aa25.04■■□□□ 1.6
SMPD4-214ENST00000455548 FAM135AQ9P2D6 1515 aa25.04■■□□□ 1.6
SMPD4-214ENST00000455548 KIF15Q9NS87 1388 aa25.03■■□□□ 1.6
SMPD4-214ENST00000455548 PPARGC1BQ86YN6 1023 aaKnown RBP25.02■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms