RNA–Protein interactions for RNA: ENST00000455069.1

HDAC9-217, Transcript of histone deacetylase 9, humanhuman

TSL 4

Gene HDAC9, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-217ENST00000455069 AKNAQ7Z591 1439 aa18.12■□□□□ 0.49
HDAC9-217ENST00000455069 TIAM1Q13009 1591 aa18.09■□□□□ 0.49
HDAC9-217ENST00000455069 EHBP1L1Q8N3D4 1523 aa18.08■□□□□ 0.49
HDAC9-217ENST00000455069 ARHGAP5Q13017 1502 aa18.08■□□□□ 0.48
HDAC9-217ENST00000455069 RAPGEF3O95398 923 aa18.06■□□□□ 0.48
HDAC9-217ENST00000455069 DENND4BO75064 1496 aaPredicted RBP18.06■□□□□ 0.48
HDAC9-217ENST00000455069 ZMYM4Q5VZL5 1548 aa18.04■□□□□ 0.48
HDAC9-217ENST00000455069 MTUS2Q5JR59 1369 aa18.04■□□□□ 0.48
HDAC9-217ENST00000455069 FOXD1Q16676 465 aa18.02■□□□□ 0.48
HDAC9-217ENST00000455069 POGZQ7Z3K3 1410 aa18.02■□□□□ 0.48
HDAC9-217ENST00000455069 ITSN2Q9NZM3 1697 aa18.02■□□□□ 0.47
HDAC9-217ENST00000455069 ABCC1P33527 1531 aa18.02■□□□□ 0.47
HDAC9-217ENST00000455069 ARHGEF40Q8TER5 1519 aa18.02■□□□□ 0.47
HDAC9-217ENST00000455069 GPATCH8Q9UKJ3 1502 aaKnown RBP18.02■□□□□ 0.47
HDAC9-217ENST00000455069 SCAPERQ9BY12 1400 aa18.01■□□□□ 0.47
HDAC9-217ENST00000455069 SUPT6HQ7KZ85 1726 aaKnown RBP18.01■□□□□ 0.47
HDAC9-217ENST00000455069 SAMD9LQ8IVG5 1584 aa18■□□□□ 0.47
HDAC9-217ENST00000455069 MAP3K1Q13233 1512 aa18■□□□□ 0.47
HDAC9-217ENST00000455069 EFCAB2Q5VUJ9 269 aa18■□□□□ 0.47
HDAC9-217ENST00000455069 ARHGEF12Q9NZN5 1544 aa17.99■□□□□ 0.47
HDAC9-217ENST00000455069 KDM5CP41229 1560 aa17.98■□□□□ 0.47
HDAC9-217ENST00000455069 SIGLEC1Q9BZZ2 1709 aa17.98■□□□□ 0.47
HDAC9-217ENST00000455069 LRRC9Q6ZRR7 1453 aa17.97■□□□□ 0.47
HDAC9-217ENST00000455069 NCOA2Q15596 1464 aa17.95■□□□□ 0.46
HDAC9-217ENST00000455069 ZFYVE16Q7Z3T8 1539 aa17.95■□□□□ 0.46
HDAC9-217ENST00000455069 YEATS2Q9ULM3 1422 aa17.95■□□□□ 0.46
HDAC9-217ENST00000455069 CCNB3Q8WWL7 1395 aa17.94■□□□□ 0.46
HDAC9-217ENST00000455069 ZNF518AQ6AHZ1 1483 aa17.94■□□□□ 0.46
HDAC9-217ENST00000455069 SYCP2Q9BX26 1530 aa17.93■□□□□ 0.46
HDAC9-217ENST00000455069 HECW2Q9P2P5 1572 aa17.92■□□□□ 0.46
HDAC9-217ENST00000455069 TRAPPC8Q9Y2L5 1435 aa17.92■□□□□ 0.46
HDAC9-217ENST00000455069 KANK4Q5T7N3 995 aaPredicted RBP17.92■□□□□ 0.46
HDAC9-217ENST00000455069 MAGI2Q86UL8 1455 aa17.92■□□□□ 0.46
HDAC9-217ENST00000455069 ABCA6Q8N139 1617 aa17.89■□□□□ 0.45
HDAC9-217ENST00000455069 BCORL1Q5H9F3 1711 aa17.89■□□□□ 0.45
HDAC9-217ENST00000455069 KIDINS220Q9ULH0 1771 aa17.89■□□□□ 0.45
HDAC9-217ENST00000455069 DIP2CQ9Y2E4 1556 aa17.88■□□□□ 0.45
HDAC9-217ENST00000455069 AFAP1Q8N556 730 aa17.88■□□□□ 0.45
HDAC9-217ENST00000455069 ADAMTSL3P82987 1691 aa17.87■□□□□ 0.45
HDAC9-217ENST00000455069 CFDP1Q9UEE9 299 aaPredicted RBP17.87■□□□□ 0.45
HDAC9-217ENST00000455069 ZNF777Q9ULD5 760 aaPredicted RBP17.87■□□□□ 0.45
HDAC9-217ENST00000455069 KIAA1107Q9UPP5 1409 aa17.86■□□□□ 0.45
HDAC9-217ENST00000455069 MLH3Q9UHC1 1453 aa17.86■□□□□ 0.45
HDAC9-217ENST00000455069 PLEKHH2Q8IVE3 1493 aa17.85■□□□□ 0.45
HDAC9-217ENST00000455069 INO80Q9ULG1 1556 aaPredicted RBP17.84■□□□□ 0.45
HDAC9-217ENST00000455069 ZNF644Q9H582 1327 aaPredicted RBP17.84■□□□□ 0.45
HDAC9-217ENST00000455069 CAMSAP2Q08AD1 1489 aa17.83■□□□□ 0.45
HDAC9-217ENST00000455069 MBD5Q9P267 1494 aa17.83■□□□□ 0.45
HDAC9-217ENST00000455069 ATP10AO60312 1499 aa17.82■□□□□ 0.44
HDAC9-217ENST00000455069 HNRNPMP52272 730 aaKnown RBP eCLIP17.82■□□□□ 0.44
HDAC9-217ENST00000455069 MADDQ8WXG6 1647 aa17.82■□□□□ 0.44
HDAC9-217ENST00000455069 REREQ9P2R6 1566 aa17.82■□□□□ 0.44
HDAC9-217ENST00000455069 C9orf84Q5VXU9 1444 aa17.81■□□□□ 0.44
HDAC9-217ENST00000455069 PTPRMP28827 1452 aa17.81■□□□□ 0.44
HDAC9-217ENST00000455069 ATP7AQ04656 1500 aa17.8■□□□□ 0.44
HDAC9-217ENST00000455069 MYOM3Q5VTT5 1437 aa17.79■□□□□ 0.44
HDAC9-217ENST00000455069 ARHGEF5Q12774 1597 aa17.77■□□□□ 0.44
HDAC9-217ENST00000455069 RIMS1Q86UR5 1692 aaKnown RBP17.77■□□□□ 0.43
HDAC9-217ENST00000455069 ARID4BQ4LE39 1312 aaPredicted RBP17.76■□□□□ 0.43
HDAC9-217ENST00000455069 APLP2Q06481 763 aa17.76■□□□□ 0.43
HDAC9-217ENST00000455069 FER1L4A9Z1Z3 1794 aa17.76■□□□□ 0.43
HDAC9-217ENST00000455069 CCDC141Q6ZP82 1450 aa17.75■□□□□ 0.43
HDAC9-217ENST00000455069 MIA2Q96PC5 1412 aa17.75■□□□□ 0.43
HDAC9-217ENST00000455069 ADGBQ8N7X0 1667 aa17.75■□□□□ 0.43
HDAC9-217ENST00000455069 PLXNC1O60486 1568 aa17.74■□□□□ 0.43
HDAC9-217ENST00000455069 SPAG9O60271 1321 aaKnown RBP17.73■□□□□ 0.43
HDAC9-217ENST00000455069 AGLP35573 1532 aa17.73■□□□□ 0.43
HDAC9-217ENST00000455069 PTPN23Q9H3S7 1636 aa17.73■□□□□ 0.43
HDAC9-217ENST00000455069 ILDR1Q86SU0 546 aaPredicted RBP17.73■□□□□ 0.43
HDAC9-217ENST00000455069 MYT1LQ9UL68 1186 aa17.72■□□□□ 0.43
HDAC9-217ENST00000455069 CROCC2H7BZ55 1655 aa17.71■□□□□ 0.42
HDAC9-217ENST00000455069 FGD6Q6ZV73 1430 aa17.7■□□□□ 0.42
HDAC9-217ENST00000455069 RTEL1-TNFRSF6BF6WH68 1400 aa17.69■□□□□ 0.42
HDAC9-217ENST00000455069 MAST1Q9Y2H9 1570 aa17.69■□□□□ 0.42
HDAC9-217ENST00000455069 TCOF1Q13428 1488 aaKnown RBP17.68■□□□□ 0.42
HDAC9-217ENST00000455069 MLECQ14165 292 aa17.67■□□□□ 0.42
HDAC9-217ENST00000455069 A2MP01023 1474 aa17.67■□□□□ 0.42
HDAC9-217ENST00000455069 DNMT1P26358 1616 aaKnown RBP17.65■□□□□ 0.42
HDAC9-217ENST00000455069 LMTK3Q96Q04 1460 aa17.65■□□□□ 0.42
HDAC9-217ENST00000455069 RSPH4AQ5TD94 716 aa17.62■□□□□ 0.41
HDAC9-217ENST00000455069 ABCC5O15440 1437 aa17.62■□□□□ 0.41
HDAC9-217ENST00000455069 C3P01024 1663 aa17.61■□□□□ 0.41
HDAC9-217ENST00000455069 SHANK2Q9UPX8 1470 aa17.6■□□□□ 0.41
HDAC9-217ENST00000455069 DAPK1P53355 1430 aa17.59■□□□□ 0.41
HDAC9-217ENST00000455069 PLPPR3Q6T4P5 718 aa17.59■□□□□ 0.41
HDAC9-217ENST00000455069 DHX29Q7Z478 1369 aaKnown RBP17.58■□□□□ 0.4
HDAC9-217ENST00000455069 MROH2AA6NES4 1674 aa17.58■□□□□ 0.4
HDAC9-217ENST00000455069 CLTCQ00610 1675 aaKnown RBP17.58■□□□□ 0.4
HDAC9-217ENST00000455069 PPARGC1BQ86YN6 1023 aaKnown RBP17.57■□□□□ 0.4
HDAC9-217ENST00000455069 TSPY4P0CV99 314 aa17.56■□□□□ 0.4
HDAC9-217ENST00000455069 TSPY10P0CW01 314 aa17.56■□□□□ 0.4
HDAC9-217ENST00000455069 EIF2AK4Q9P2K8 1649 aaKnown RBP17.54■□□□□ 0.4
HDAC9-217ENST00000455069 RNF17Q9BXT8 1623 aaKnown RBP17.54■□□□□ 0.4
HDAC9-217ENST00000455069 MROH1Q8NDA8 1641 aa17.52■□□□□ 0.4
HDAC9-217ENST00000455069 HSPA2P54652 639 aa17.52■□□□□ 0.4
HDAC9-217ENST00000455069 DUOX2Q9NRD8 1548 aa17.52■□□□□ 0.39
HDAC9-217ENST00000455069 CEBPAP49715 358 aaPredicted RBP17.51■□□□□ 0.39
HDAC9-217ENST00000455069 CNTLNQ9NXG0 1405 aa17.51■□□□□ 0.39
HDAC9-217ENST00000455069 PREX1Q8TCU6 1659 aa17.51■□□□□ 0.39
HDAC9-217ENST00000455069 ADGRL2O95490 1459 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms