RNA–Protein interactions for RNA: ENST00000453453.1

SNX17-204, Transcript of sorting nexin 17, humanhuman

TSL 1 (best)

Gene SNX17, Length 1,638 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX17-204ENST00000453453 CFDP1Q9UEE9 299 aaPredicted RBP23.77■■□□□ 1.4
SNX17-204ENST00000453453 ABCA9Q8IUA7 1624 aa23.76■■□□□ 1.39
SNX17-204ENST00000453453 CDC42BPBQ9Y5S2 1711 aa23.75■■□□□ 1.39
SNX17-204ENST00000453453 ARHGAP5Q13017 1502 aa23.71■■□□□ 1.39
SNX17-204ENST00000453453 CAMSAP2Q08AD1 1489 aa23.7■■□□□ 1.39
SNX17-204ENST00000453453 ARAP3Q8WWN8 1544 aa23.69■■□□□ 1.38
SNX17-204ENST00000453453 PLCH2O75038 1416 aa23.69■■□□□ 1.38
SNX17-204ENST00000453453 ITGAEP38570 1179 aa23.68■■□□□ 1.38
SNX17-204ENST00000453453 ZNF777Q9ULD5 760 aaPredicted RBP23.68■■□□□ 1.38
SNX17-204ENST00000453453 GLI2P10070 1586 aa23.63■■□□□ 1.37
SNX17-204ENST00000453453 DNMT1P26358 1616 aaKnown RBP23.63■■□□□ 1.37
SNX17-204ENST00000453453 SAMD9LQ8IVG5 1584 aa23.63■■□□□ 1.37
SNX17-204ENST00000453453 EFCAB2Q5VUJ9 269 aa23.62■■□□□ 1.37
SNX17-204ENST00000453453 PLEKHH2Q8IVE3 1493 aa23.62■■□□□ 1.37
SNX17-204ENST00000453453 ZNF644Q9H582 1327 aaPredicted RBP23.62■■□□□ 1.37
SNX17-204ENST00000453453 DIP2BQ9P265 1576 aa23.61■■□□□ 1.37
SNX17-204ENST00000453453 CFAP74Q9C0B2 1584 aa23.6■■□□□ 1.37
SNX17-204ENST00000453453 CD109Q6YHK3 1445 aa23.6■■□□□ 1.37
SNX17-204ENST00000453453 DAPK1P53355 1430 aa23.58■■□□□ 1.37
SNX17-204ENST00000453453 ARHGEF5Q12774 1597 aa23.58■■□□□ 1.36
SNX17-204ENST00000453453 CROCC2H7BZ55 1655 aa23.57■■□□□ 1.36
SNX17-204ENST00000453453 MAP3K4Q9Y6R4 1608 aa23.57■■□□□ 1.36
SNX17-204ENST00000453453 FANCAO15360 1455 aa23.56■■□□□ 1.36
SNX17-204ENST00000453453 SYCP2Q9BX26 1530 aa23.54■■□□□ 1.36
SNX17-204ENST00000453453 KIAA1107Q9UPP5 1409 aa23.54■■□□□ 1.36
SNX17-204ENST00000453453 ABCC1P33527 1531 aa23.54■■□□□ 1.36
SNX17-204ENST00000453453 SCAF1Q9H7N4 1312 aaKnown RBP23.53■■□□□ 1.36
SNX17-204ENST00000453453 ABCC5O15440 1437 aa23.53■■□□□ 1.36
SNX17-204ENST00000453453 FAM69CQ0P6D2 419 aa23.52■■□□□ 1.36
SNX17-204ENST00000453453 RSPH4AQ5TD94 716 aa23.52■■□□□ 1.36
SNX17-204ENST00000453453 ADGBQ8N7X0 1667 aa23.52■■□□□ 1.36
SNX17-204ENST00000453453 PTPRKQ15262 1439 aa23.51■■□□□ 1.35
SNX17-204ENST00000453453 CCDC141Q6ZP82 1450 aa23.51■■□□□ 1.35
SNX17-204ENST00000453453 SHANK2Q9UPX8 1470 aa23.5■■□□□ 1.35
SNX17-204ENST00000453453 KIF13AQ9H1H9 1805 aa23.5■■□□□ 1.35
SNX17-204ENST00000453453 MBD5Q9P267 1494 aa23.49■■□□□ 1.35
SNX17-204ENST00000453453 HNRNPMP52272 730 aaKnown RBP eCLIP23.49■■□□□ 1.35
SNX17-204ENST00000453453 ADGRL1O94910 1474 aa23.47■■□□□ 1.35
SNX17-204ENST00000453453 AKNAQ7Z591 1439 aa23.47■■□□□ 1.35
SNX17-204ENST00000453453 NEO1Q92859 1461 aa23.47■■□□□ 1.35
SNX17-204ENST00000453453 TSPY4P0CV99 314 aa23.46■■□□□ 1.35
SNX17-204ENST00000453453 TSPY10P0CW01 314 aa23.46■■□□□ 1.35
SNX17-204ENST00000453453 CHIC2Q9UKJ5 165 aa23.46■■□□□ 1.35
SNX17-204ENST00000453453 ROCK1Q13464 1354 aa23.46■■□□□ 1.35
SNX17-204ENST00000453453 SETD5Q9C0A6 1442 aa23.45■■□□□ 1.35
SNX17-204ENST00000453453 GCC2Q8IWJ2 1684 aa23.45■■□□□ 1.35
SNX17-204ENST00000453453 HFM1A2PYH4 1435 aa23.45■■□□□ 1.34
SNX17-204ENST00000453453 TSPOAP1O95153 1857 aa23.44■■□□□ 1.34
SNX17-204ENST00000453453 C9orf84Q5VXU9 1444 aa23.43■■□□□ 1.34
SNX17-204ENST00000453453 ARHGEF12Q9NZN5 1544 aa23.43■■□□□ 1.34
SNX17-204ENST00000453453 TEX14Q8IWB6 1497 aa23.43■■□□□ 1.34
SNX17-204ENST00000453453 MAST1Q9Y2H9 1570 aa23.42■■□□□ 1.34
SNX17-204ENST00000453453 ADGRL2O95490 1459 aa23.42■■□□□ 1.34
SNX17-204ENST00000453453 SCAPERQ9BY12 1400 aa23.41■■□□□ 1.34
SNX17-204ENST00000453453 ANKRD30AQ9BXX3 1397 aa23.41■■□□□ 1.34
SNX17-204ENST00000453453 NAIPQ13075 1403 aa23.38■■□□□ 1.33
SNX17-204ENST00000453453 PPRC1Q5VV67 1664 aaKnown RBP23.38■■□□□ 1.33
SNX17-204ENST00000453453 RRP7BPQ9NSQ0 103 aa23.38■■□□□ 1.33
SNX17-204ENST00000453453 RAB3GAP2Q9H2M9 1393 aa23.38■■□□□ 1.33
SNX17-204ENST00000453453 TRAPPC8Q9Y2L5 1435 aa23.37■■□□□ 1.33
SNX17-204ENST00000453453 NCOA1Q15788 1441 aa23.36■■□□□ 1.33
SNX17-204ENST00000453453 ZNF518AQ6AHZ1 1483 aa23.35■■□□□ 1.33
SNX17-204ENST00000453453 PLXNC1O60486 1568 aa23.34■■□□□ 1.33
SNX17-204ENST00000453453 POGZQ7Z3K3 1410 aa23.32■■□□□ 1.32
SNX17-204ENST00000453453 SPAG9O60271 1321 aaKnown RBP23.31■■□□□ 1.32
SNX17-204ENST00000453453 DENND4BO75064 1496 aaPredicted RBP23.31■■□□□ 1.32
SNX17-204ENST00000453453 RTEL1-TNFRSF6BF6WH68 1400 aa23.31■■□□□ 1.32
SNX17-204ENST00000453453 ACIN1Q9UKV3 1341 aaKnown RBP23.3■■□□□ 1.32
SNX17-204ENST00000453453 INO80Q9ULG1 1556 aaPredicted RBP23.3■■□□□ 1.32
SNX17-204ENST00000453453 AFAP1Q8N556 730 aa23.3■■□□□ 1.32
SNX17-204ENST00000453453 ZFYVE16Q7Z3T8 1539 aa23.29■■□□□ 1.32
SNX17-204ENST00000453453 MYT1Q01538 1121 aa23.29■■□□□ 1.32
SNX17-204ENST00000453453 KIF15Q9NS87 1388 aa23.28■■□□□ 1.32
SNX17-204ENST00000453453 ATP7AQ04656 1500 aa23.28■■□□□ 1.32
SNX17-204ENST00000453453 KDM5CP41229 1560 aa23.28■■□□□ 1.32
SNX17-204ENST00000453453 CCER1Q8TC90 406 aaPredicted RBP23.27■■□□□ 1.32
SNX17-204ENST00000453453 RICTORQ6R327 1708 aa23.27■■□□□ 1.32
SNX17-204ENST00000453453 TRHP20396 242 aaPredicted RBP23.26■■□□□ 1.31
SNX17-204ENST00000453453 MYT1LQ9UL68 1186 aa23.26■■□□□ 1.31
SNX17-204ENST00000453453 HECW2Q9P2P5 1572 aa23.25■■□□□ 1.31
SNX17-204ENST00000453453 ANKRD50Q9ULJ7 1429 aa23.24■■□□□ 1.31
SNX17-204ENST00000453453 DUOX2Q9NRD8 1548 aa23.24■■□□□ 1.31
SNX17-204ENST00000453453 KDM6BO15054 1643 aa23.23■■□□□ 1.31
SNX17-204ENST00000453453 KIDINS220Q9ULH0 1771 aa23.21■■□□□ 1.31
SNX17-204ENST00000453453 MLH3Q9UHC1 1453 aa23.21■■□□□ 1.31
SNX17-204ENST00000453453 CENPBP07199 599 aaPredicted RBP23.2■■□□□ 1.3
SNX17-204ENST00000453453 FRMPD1Q5SYB0 1578 aa23.18■■□□□ 1.3
SNX17-204ENST00000453453 RAPGEF3O95398 923 aa23.18■■□□□ 1.3
SNX17-204ENST00000453453 ERBINQ96RT1 1412 aa23.17■■□□□ 1.3
SNX17-204ENST00000453453 DHX57Q6P158 1386 aaKnown RBP23.17■■□□□ 1.3
SNX17-204ENST00000453453 ZMYM4Q5VZL5 1548 aa23.17■■□□□ 1.3
SNX17-204ENST00000453453 TRIM52Q96A61 297 aa23.15■■□□□ 1.3
SNX17-204ENST00000453453 ABCA6Q8N139 1617 aa23.12■■□□□ 1.29
SNX17-204ENST00000453453 MAGI2Q86UL8 1455 aa23.11■■□□□ 1.29
SNX17-204ENST00000453453 EIF2AK4Q9P2K8 1649 aaKnown RBP23.11■■□□□ 1.29
SNX17-204ENST00000453453 UNC13BO14795 1591 aa23.09■■□□□ 1.29
SNX17-204ENST00000453453 DIP2CQ9Y2E4 1556 aa23.09■■□□□ 1.29
SNX17-204ENST00000453453 CLSPNQ9HAW4 1339 aa23.09■■□□□ 1.29
SNX17-204ENST00000453453 DHX29Q7Z478 1369 aaKnown RBP23.09■■□□□ 1.29
SNX17-204ENST00000453453 A2MP01023 1474 aa23.08■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms