RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, humanhuman

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-209ENST00000451859 ABCA9Q8IUA7 1624 aa14.31□□□□□ -0.12
RFX3-209ENST00000451859 MAGI3Q5TCQ9 1506 aa14.3□□□□□ -0.12
RFX3-209ENST00000451859 SP7Q8TDD2 431 aaPredicted RBP14.28□□□□□ -0.12
RFX3-209ENST00000451859 AKT1S1Q96B36 256 aa14.28□□□□□ -0.12
RFX3-209ENST00000451859 ATF5Q9Y2D1 282 aaPredicted RBP14.27□□□□□ -0.13
RFX3-209ENST00000451859 CDK13Q14004 1512 aaKnown RBP14.26□□□□□ -0.13
RFX3-209ENST00000451859 ARHGAP35Q9NRY4 1499 aa14.25□□□□□ -0.13
RFX3-209ENST00000451859 LRRIQ1Q96JM4 1722 aa14.25□□□□□ -0.13
RFX3-209ENST00000451859 ATP1B4Q9UN42 357 aaPredicted RBP14.25□□□□□ -0.13
RFX3-209ENST00000451859 HECW1Q76N89 1606 aa14.25□□□□□ -0.13
RFX3-209ENST00000451859 KDM4FA0A1W2PPD8 638 aa14.23□□□□□ -0.13
RFX3-209ENST00000451859 TTC37Q6PGP7 1564 aa14.22□□□□□ -0.13
RFX3-209ENST00000451859 ADGRL1O94910 1474 aa14.22□□□□□ -0.13
RFX3-209ENST00000451859 PLEKHD1A6NEE1 506 aa14.2□□□□□ -0.14
RFX3-209ENST00000451859 FMN1Q68DA7 1419 aa14.2□□□□□ -0.14
RFX3-209ENST00000451859 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.19□□□□□ -0.14
RFX3-209ENST00000451859 PCF11O94913 1555 aaKnown RBP14.18□□□□□ -0.14
RFX3-209ENST00000451859 ARAP3Q8WWN8 1544 aa14.18□□□□□ -0.14
RFX3-209ENST00000451859 MYO5CQ9NQX4 1742 aa14.18□□□□□ -0.14
RFX3-209ENST00000451859 CFAP74Q9C0B2 1584 aa14.17□□□□□ -0.14
RFX3-209ENST00000451859 REM2Q8IYK8 340 aaPredicted RBP14.17□□□□□ -0.14
RFX3-209ENST00000451859 KIF14Q15058 1648 aa14.16□□□□□ -0.14
RFX3-209ENST00000451859 PIP4P2Q8N4L2 257 aa14.16□□□□□ -0.14
RFX3-209ENST00000451859 NEO1Q92859 1461 aa14.16□□□□□ -0.14
RFX3-209ENST00000451859 RICTORQ6R327 1708 aa14.15□□□□□ -0.14
RFX3-209ENST00000451859 FRMPD1Q5SYB0 1578 aa14.15□□□□□ -0.14
RFX3-209ENST00000451859 ZBTB12Q9Y330 459 aaPredicted RBP14.15□□□□□ -0.14
RFX3-209ENST00000451859 FANCAO15360 1455 aa14.13□□□□□ -0.15
RFX3-209ENST00000451859 RAPGEF3O95398 923 aa14.13□□□□□ -0.15
RFX3-209ENST00000451859 PHLDB1Q86UU1 1377 aa14.11□□□□□ -0.15
RFX3-209ENST00000451859 CLIP1P30622 1438 aa14.1□□□□□ -0.15
RFX3-209ENST00000451859 FOXD4L1Q9NU39 408 aa14.1□□□□□ -0.15
RFX3-209ENST00000451859 AKNAQ7Z591 1439 aa14.09□□□□□ -0.15
RFX3-209ENST00000451859 DENND4BO75064 1496 aaPredicted RBP14.08□□□□□ -0.16
RFX3-209ENST00000451859 CASKIN1Q8WXD9 1431 aa14.07□□□□□ -0.16
RFX3-209ENST00000451859 CDC42BPBQ9Y5S2 1711 aa14.07□□□□□ -0.16
RFX3-209ENST00000451859 ARHGEF40Q8TER5 1519 aa14.07□□□□□ -0.16
RFX3-209ENST00000451859 CDK11AQ9UQ88 783 aaPredicted RBP14.07□□□□□ -0.16
RFX3-209ENST00000451859 TROQ12816 1431 aaPredicted RBP14.07□□□□□ -0.16
RFX3-209ENST00000451859 CCDC18Q5T9S5 1454 aa14.06□□□□□ -0.16
RFX3-209ENST00000451859 ARHGAP5Q13017 1502 aa14.05□□□□□ -0.16
RFX3-209ENST00000451859 CDC42BPAQ5VT25 1732 aa14.05□□□□□ -0.16
RFX3-209ENST00000451859 FYCO1Q9BQS8 1478 aa14.05□□□□□ -0.16
RFX3-209ENST00000451859 BCORL1Q5H9F3 1711 aa14.04□□□□□ -0.16
RFX3-209ENST00000451859 PITPNM1O00562 1244 aa14.04□□□□□ -0.16
RFX3-209ENST00000451859 PLCH2O75038 1416 aa14.04□□□□□ -0.16
RFX3-209ENST00000451859 PREX2Q70Z35 1606 aa14.04□□□□□ -0.16
RFX3-209ENST00000451859 ADAMTSL3P82987 1691 aa14.04□□□□□ -0.16
RFX3-209ENST00000451859 ARID4BQ4LE39 1312 aaPredicted RBP14.03□□□□□ -0.16
RFX3-209ENST00000451859 ZMYM4Q5VZL5 1548 aa14.03□□□□□ -0.16
RFX3-209ENST00000451859 ZFYVE16Q7Z3T8 1539 aa14.03□□□□□ -0.16
RFX3-209ENST00000451859 MADDQ8WXG6 1647 aa14.03□□□□□ -0.16
RFX3-209ENST00000451859 SIGLEC1Q9BZZ2 1709 aa14.03□□□□□ -0.16
RFX3-209ENST00000451859 FXR2P51116 673 aaKnown RBP eCLIP14.02□□□□□ -0.17
RFX3-209ENST00000451859 RIMS1Q86UR5 1692 aaKnown RBP14.01□□□□□ -0.17
RFX3-209ENST00000451859 SCAPERQ9BY12 1400 aa14.01□□□□□ -0.17
RFX3-209ENST00000451859 SLC4A1APQ9BWU0 796 aaKnown RBP14.01□□□□□ -0.17
RFX3-209ENST00000451859 HECW2Q9P2P5 1572 aa14□□□□□ -0.17
RFX3-209ENST00000451859 POGZQ7Z3K3 1410 aa13.99□□□□□ -0.17
RFX3-209ENST00000451859 YEATS2Q9ULM3 1422 aa13.99□□□□□ -0.17
RFX3-209ENST00000451859 ITSN2Q9NZM3 1697 aa13.99□□□□□ -0.17
RFX3-209ENST00000451859 EFCAB2Q5VUJ9 269 aa13.99□□□□□ -0.17
RFX3-209ENST00000451859 CEP162Q5TB80 1403 aa13.98□□□□□ -0.17
RFX3-209ENST00000451859 FER1L4A9Z1Z3 1794 aa13.97□□□□□ -0.17
RFX3-209ENST00000451859 HAX1O00165 279 aa13.96□□□□□ -0.17
RFX3-209ENST00000451859 ABCC1P33527 1531 aa13.95□□□□□ -0.18
RFX3-209ENST00000451859 PTPRMP28827 1452 aa13.94□□□□□ -0.18
RFX3-209ENST00000451859 MAGI2Q86UL8 1455 aa13.94□□□□□ -0.18
RFX3-209ENST00000451859 MYT1LQ9UL68 1186 aa13.94□□□□□ -0.18
RFX3-209ENST00000451859 ZNF518AQ6AHZ1 1483 aa13.93□□□□□ -0.18
RFX3-209ENST00000451859 KDM5CP41229 1560 aa13.93□□□□□ -0.18
RFX3-209ENST00000451859 LOC105371045A0A1W2PR82 267 aa13.92□□□□□ -0.18
RFX3-209ENST00000451859 ABCA6Q8N139 1617 aa13.92□□□□□ -0.18
RFX3-209ENST00000451859 SAMD9LQ8IVG5 1584 aa13.92□□□□□ -0.18
RFX3-209ENST00000451859 MLECQ14165 292 aa13.91□□□□□ -0.18
RFX3-209ENST00000451859 ZNF777Q9ULD5 760 aaPredicted RBP13.91□□□□□ -0.18
RFX3-209ENST00000451859 MTUS2Q5JR59 1369 aa13.91□□□□□ -0.18
RFX3-209ENST00000451859 DIP2CQ9Y2E4 1556 aa13.91□□□□□ -0.18
RFX3-209ENST00000451859 ARHGEF12Q9NZN5 1544 aa13.9□□□□□ -0.18
RFX3-209ENST00000451859 AFAP1Q8N556 730 aa13.9□□□□□ -0.18
RFX3-209ENST00000451859 EHBP1L1Q8N3D4 1523 aa13.9□□□□□ -0.19
RFX3-209ENST00000451859 SYCP2Q9BX26 1530 aa13.9□□□□□ -0.19
RFX3-209ENST00000451859 C9orf84Q5VXU9 1444 aa13.9□□□□□ -0.19
RFX3-209ENST00000451859 KIDINS220Q9ULH0 1771 aa13.89□□□□□ -0.19
RFX3-209ENST00000451859 ATP10AO60312 1499 aa13.89□□□□□ -0.19
RFX3-209ENST00000451859 TRAPPC8Q9Y2L5 1435 aa13.89□□□□□ -0.19
RFX3-209ENST00000451859 GPATCH8Q9UKJ3 1502 aaKnown RBP13.88□□□□□ -0.19
RFX3-209ENST00000451859 EVX2Q03828 476 aa13.87□□□□□ -0.19
RFX3-209ENST00000451859 TIAM1Q13009 1591 aa13.87□□□□□ -0.19
RFX3-209ENST00000451859 CCNB3Q8WWL7 1395 aa13.86□□□□□ -0.19
RFX3-209ENST00000451859 SUPT6HQ7KZ85 1726 aaKnown RBP13.86□□□□□ -0.19
RFX3-209ENST00000451859 ZBTB22O15209 634 aa13.84□□□□□ -0.19
RFX3-209ENST00000451859 MLH3Q9UHC1 1453 aa13.83□□□□□ -0.2
RFX3-209ENST00000451859 CFDP1Q9UEE9 299 aaPredicted RBP13.82□□□□□ -0.2
RFX3-209ENST00000451859 REREQ9P2R6 1566 aa13.82□□□□□ -0.2
RFX3-209ENST00000451859 HNRNPMP52272 730 aaKnown RBP eCLIP13.81□□□□□ -0.2
RFX3-209ENST00000451859 VPS8Q8N3P4 1428 aa13.81□□□□□ -0.2
RFX3-209ENST00000451859 ATP7AQ04656 1500 aa13.8□□□□□ -0.2
RFX3-209ENST00000451859 INO80Q9ULG1 1556 aaPredicted RBP13.8□□□□□ -0.2
RFX3-209ENST00000451859 C3P01024 1663 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms