RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 FRMPD1Q5SYB0 1578 aa11.51□□□□□ -0.57
VPS41-208ENST00000448833 TTC37Q6PGP7 1564 aa11.51□□□□□ -0.57
VPS41-208ENST00000448833 BCORL1Q5H9F3 1711 aa11.51□□□□□ -0.57
VPS41-208ENST00000448833 HECW2Q9P2P5 1572 aa11.5□□□□□ -0.57
VPS41-208ENST00000448833 KIF14Q15058 1648 aa11.5□□□□□ -0.57
VPS41-208ENST00000448833 ZMYM4Q5VZL5 1548 aa11.5□□□□□ -0.57
VPS41-208ENST00000448833 ARHGEF40Q8TER5 1519 aa11.49□□□□□ -0.57
VPS41-208ENST00000448833 TROQ12816 1431 aaPredicted RBP11.48□□□□□ -0.57
VPS41-208ENST00000448833 CCDC18Q5T9S5 1454 aa11.48□□□□□ -0.57
VPS41-208ENST00000448833 ZFYVE16Q7Z3T8 1539 aa11.47□□□□□ -0.57
VPS41-208ENST00000448833 PTPRMP28827 1452 aa11.47□□□□□ -0.57
VPS41-208ENST00000448833 SCAPERQ9BY12 1400 aa11.47□□□□□ -0.57
VPS41-208ENST00000448833 CASKIN1Q8WXD9 1431 aa11.46□□□□□ -0.57
VPS41-208ENST00000448833 LRRIQ1Q96JM4 1722 aa11.45□□□□□ -0.58
VPS41-208ENST00000448833 ARHGAP5Q13017 1502 aa11.45□□□□□ -0.58
VPS41-208ENST00000448833 ZNF518AQ6AHZ1 1483 aa11.44□□□□□ -0.58
VPS41-208ENST00000448833 MADDQ8WXG6 1647 aa11.44□□□□□ -0.58
VPS41-208ENST00000448833 FYCO1Q9BQS8 1478 aa11.43□□□□□ -0.58
VPS41-208ENST00000448833 CDC42BPBQ9Y5S2 1711 aa11.42□□□□□ -0.58
VPS41-208ENST00000448833 ATP10AO60312 1499 aa11.42□□□□□ -0.58
VPS41-208ENST00000448833 RIMS1Q86UR5 1692 aaKnown RBP11.42□□□□□ -0.58
VPS41-208ENST00000448833 MYT1LQ9UL68 1186 aa11.41□□□□□ -0.58
VPS41-208ENST00000448833 PCF11O94913 1555 aaKnown RBP11.41□□□□□ -0.58
VPS41-208ENST00000448833 PREX2Q70Z35 1606 aa11.4□□□□□ -0.58
VPS41-208ENST00000448833 FER1L4A9Z1Z3 1794 aa11.4□□□□□ -0.58
VPS41-208ENST00000448833 C9orf84Q5VXU9 1444 aa11.4□□□□□ -0.58
VPS41-208ENST00000448833 YEATS2Q9ULM3 1422 aa11.4□□□□□ -0.58
VPS41-208ENST00000448833 SETD1BQ9UPS6 1966 aaKnown RBP11.39□□□□□ -0.59
VPS41-208ENST00000448833 CDC42BPAQ5VT25 1732 aa11.38□□□□□ -0.59
VPS41-208ENST00000448833 KDM5CP41229 1560 aa11.38□□□□□ -0.59
VPS41-208ENST00000448833 AFAP1Q8N556 730 aa11.37□□□□□ -0.59
VPS41-208ENST00000448833 MLH3Q9UHC1 1453 aa11.37□□□□□ -0.59
VPS41-208ENST00000448833 MLECQ14165 292 aa11.36□□□□□ -0.59
VPS41-208ENST00000448833 ILDR1Q86SU0 546 aaPredicted RBP11.36□□□□□ -0.59
VPS41-208ENST00000448833 REREQ9P2R6 1566 aa11.36□□□□□ -0.59
VPS41-208ENST00000448833 ESF1Q9H501 851 aaKnown RBP11.35□□□□□ -0.59
VPS41-208ENST00000448833 ITSN2Q9NZM3 1697 aa11.35□□□□□ -0.59
VPS41-208ENST00000448833 SIGLEC1Q9BZZ2 1709 aa11.35□□□□□ -0.59
VPS41-208ENST00000448833 ABCC1P33527 1531 aa11.34□□□□□ -0.59
VPS41-208ENST00000448833 ARHGEF12Q9NZN5 1544 aa11.34□□□□□ -0.59
VPS41-208ENST00000448833 PLEKHH2Q8IVE3 1493 aa11.33□□□□□ -0.6
VPS41-208ENST00000448833 LMTK3Q96Q04 1460 aa11.33□□□□□ -0.6
VPS41-208ENST00000448833 MTUS2Q5JR59 1369 aa11.33□□□□□ -0.6
VPS41-208ENST00000448833 PREX1Q8TCU6 1659 aa11.32□□□□□ -0.6
VPS41-208ENST00000448833 DIP2CQ9Y2E4 1556 aa11.32□□□□□ -0.6
VPS41-208ENST00000448833 CCNB3Q8WWL7 1395 aa11.31□□□□□ -0.6
VPS41-208ENST00000448833 AGLP35573 1532 aa11.31□□□□□ -0.6
VPS41-208ENST00000448833 CFDP1Q9UEE9 299 aaPredicted RBP11.31□□□□□ -0.6
VPS41-208ENST00000448833 ZNF777Q9ULD5 760 aaPredicted RBP11.31□□□□□ -0.6
VPS41-208ENST00000448833 GPATCH8Q9UKJ3 1502 aaKnown RBP11.3□□□□□ -0.6
VPS41-208ENST00000448833 KIAA1107Q9UPP5 1409 aa11.3□□□□□ -0.6
VPS41-208ENST00000448833 KIDINS220Q9ULH0 1771 aa11.3□□□□□ -0.6
VPS41-208ENST00000448833 ABCA6Q8N139 1617 aa11.3□□□□□ -0.6
VPS41-208ENST00000448833 SPAG9O60271 1321 aaKnown RBP11.3□□□□□ -0.6
VPS41-208ENST00000448833 TRAPPC8Q9Y2L5 1435 aa11.29□□□□□ -0.6
VPS41-208ENST00000448833 DMRT2Q9Y5R5 561 aa11.29□□□□□ -0.6
VPS41-208ENST00000448833 CNTLNQ9NXG0 1405 aa11.28□□□□□ -0.6
VPS41-208ENST00000448833 FBXO41Q8TF61 875 aa11.28□□□□□ -0.6
VPS41-208ENST00000448833 SAMD9LQ8IVG5 1584 aa11.28□□□□□ -0.6
VPS41-208ENST00000448833 HNRNPMP52272 730 aaKnown RBP eCLIP11.27□□□□□ -0.61
VPS41-208ENST00000448833 CEP162Q5TB80 1403 aa11.26□□□□□ -0.61
VPS41-208ENST00000448833 EHBP1L1Q8N3D4 1523 aa11.26□□□□□ -0.61
VPS41-208ENST00000448833 SYCP2Q9BX26 1530 aa11.26□□□□□ -0.61
VPS41-208ENST00000448833 RSPH4AQ5TD94 716 aa11.26□□□□□ -0.61
VPS41-208ENST00000448833 UHRF1BP1Q6BDS2 1440 aa11.26□□□□□ -0.61
VPS41-208ENST00000448833 MROH2AA6NES4 1674 aa11.25□□□□□ -0.61
VPS41-208ENST00000448833 C3P01024 1663 aa11.25□□□□□ -0.61
VPS41-208ENST00000448833 HSPA2P54652 639 aa11.25□□□□□ -0.61
VPS41-208ENST00000448833 ATP7AQ04656 1500 aa11.25□□□□□ -0.61
VPS41-208ENST00000448833 ADGBQ8N7X0 1667 aa11.24□□□□□ -0.61
VPS41-208ENST00000448833 SUPT6HQ7KZ85 1726 aaKnown RBP11.24□□□□□ -0.61
VPS41-208ENST00000448833 CEBPAP49715 358 aaPredicted RBP11.24□□□□□ -0.61
VPS41-208ENST00000448833 INO80Q9ULG1 1556 aaPredicted RBP11.22□□□□□ -0.61
VPS41-208ENST00000448833 TIAM1Q13009 1591 aa11.21□□□□□ -0.61
VPS41-208ENST00000448833 A2MP01023 1474 aa11.21□□□□□ -0.61
VPS41-208ENST00000448833 RTEL1-TNFRSF6BF6WH68 1400 aa11.21□□□□□ -0.61
VPS41-208ENST00000448833 NPATQ14207 1427 aa11.2□□□□□ -0.62
VPS41-208ENST00000448833 STRCQ7RTU9 1775 aa11.19□□□□□ -0.62
VPS41-208ENST00000448833 PLXNC1O60486 1568 aa11.19□□□□□ -0.62
VPS41-208ENST00000448833 ZMYM3Q14202 1370 aa11.18□□□□□ -0.62
VPS41-208ENST00000448833 TSPY4P0CV99 314 aa11.18□□□□□ -0.62
VPS41-208ENST00000448833 TSPY10P0CW01 314 aa11.18□□□□□ -0.62
VPS41-208ENST00000448833 CERKQ8TCT0 537 aa11.18□□□□□ -0.62
VPS41-208ENST00000448833 MBD5Q9P267 1494 aa11.18□□□□□ -0.62
VPS41-208ENST00000448833 CLTCQ00610 1675 aaKnown RBP11.17□□□□□ -0.62
VPS41-208ENST00000448833 GGT6Q6P531 493 aa11.17□□□□□ -0.62
VPS41-208ENST00000448833 MAP3K1Q13233 1512 aa11.17□□□□□ -0.62
VPS41-208ENST00000448833 NCOA2Q15596 1464 aa11.17□□□□□ -0.62
VPS41-208ENST00000448833 VPS8Q8N3P4 1428 aa11.17□□□□□ -0.62
VPS41-208ENST00000448833 ZNF644Q9H582 1327 aaPredicted RBP11.16□□□□□ -0.62
VPS41-208ENST00000448833 CCDC141Q6ZP82 1450 aa11.16□□□□□ -0.62
VPS41-208ENST00000448833 PTPRTO14522 1441 aa11.16□□□□□ -0.62
VPS41-208ENST00000448833 DHX29Q7Z478 1369 aaKnown RBP11.16□□□□□ -0.62
VPS41-208ENST00000448833 APLP2Q06481 763 aa11.15□□□□□ -0.62
VPS41-208ENST00000448833 FAM135AQ9P2D6 1515 aa11.14□□□□□ -0.63
VPS41-208ENST00000448833 CAMSAP2Q08AD1 1489 aa11.14□□□□□ -0.63
VPS41-208ENST00000448833 LOC105371045A0A1W2PR82 267 aa11.14□□□□□ -0.63
VPS41-208ENST00000448833 ARHGEF5Q12774 1597 aa11.14□□□□□ -0.63
VPS41-208ENST00000448833 LRRC9Q6ZRR7 1453 aa11.13□□□□□ -0.63
VPS41-208ENST00000448833 KIF3BO15066 747 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms