RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 ARHGAP5Q13017 1502 aa20.34■□□□□ 0.85
PRPF40A-203ENST00000448428 CDC42BPAQ5VT25 1732 aa20.31■□□□□ 0.84
PRPF40A-203ENST00000448428 PREX2Q70Z35 1606 aa20.31■□□□□ 0.84
PRPF40A-203ENST00000448428 MTUS2Q5JR59 1369 aa20.3■□□□□ 0.84
PRPF40A-203ENST00000448428 POGZQ7Z3K3 1410 aa20.27■□□□□ 0.84
PRPF40A-203ENST00000448428 VPS8Q8N3P4 1428 aa20.27■□□□□ 0.84
PRPF40A-203ENST00000448428 ZMYM4Q5VZL5 1548 aa20.27■□□□□ 0.84
PRPF40A-203ENST00000448428 GPATCH8Q9UKJ3 1502 aaKnown RBP20.26■□□□□ 0.83
PRPF40A-203ENST00000448428 AFAP1Q8N556 730 aa20.24■□□□□ 0.83
PRPF40A-203ENST00000448428 YEATS2Q9ULM3 1422 aa20.24■□□□□ 0.83
PRPF40A-203ENST00000448428 MAGI2Q86UL8 1455 aa20.24■□□□□ 0.83
PRPF40A-203ENST00000448428 ARHGEF40Q8TER5 1519 aa20.23■□□□□ 0.83
PRPF40A-203ENST00000448428 EHBP1L1Q8N3D4 1523 aa20.22■□□□□ 0.83
PRPF40A-203ENST00000448428 ZNF777Q9ULD5 760 aaPredicted RBP20.22■□□□□ 0.83
PRPF40A-203ENST00000448428 ZFYVE16Q7Z3T8 1539 aa20.22■□□□□ 0.83
PRPF40A-203ENST00000448428 ARHGEF12Q9NZN5 1544 aa20.22■□□□□ 0.83
PRPF40A-203ENST00000448428 CCNB3Q8WWL7 1395 aa20.21■□□□□ 0.83
PRPF40A-203ENST00000448428 ZNF518AQ6AHZ1 1483 aa20.21■□□□□ 0.83
PRPF40A-203ENST00000448428 ARID4BQ4LE39 1312 aaPredicted RBP20.21■□□□□ 0.83
PRPF40A-203ENST00000448428 TIAM1Q13009 1591 aa20.21■□□□□ 0.83
PRPF40A-203ENST00000448428 ABCC1P33527 1531 aa20.19■□□□□ 0.82
PRPF40A-203ENST00000448428 CFDP1Q9UEE9 299 aaPredicted RBP20.19■□□□□ 0.82
PRPF40A-203ENST00000448428 ITSN2Q9NZM3 1697 aa20.19■□□□□ 0.82
PRPF40A-203ENST00000448428 TRAPPC8Q9Y2L5 1435 aa20.19■□□□□ 0.82
PRPF40A-203ENST00000448428 KDM5CP41229 1560 aa20.18■□□□□ 0.82
PRPF40A-203ENST00000448428 SAMD9LQ8IVG5 1584 aa20.17■□□□□ 0.82
PRPF40A-203ENST00000448428 ADAMTSL3P82987 1691 aa20.16■□□□□ 0.82
PRPF40A-203ENST00000448428 BCORL1Q5H9F3 1711 aa20.16■□□□□ 0.82
PRPF40A-203ENST00000448428 SIGLEC1Q9BZZ2 1709 aa20.16■□□□□ 0.82
PRPF40A-203ENST00000448428 HNRNPMP52272 730 aaKnown RBP eCLIP20.15■□□□□ 0.822e-7■■■■■ 36.2
PRPF40A-203ENST00000448428 MYT1LQ9UL68 1186 aa20.15■□□□□ 0.82
PRPF40A-203ENST00000448428 ATP10AO60312 1499 aa20.15■□□□□ 0.82
PRPF40A-203ENST00000448428 SUPT6HQ7KZ85 1726 aaKnown RBP20.15■□□□□ 0.82
PRPF40A-203ENST00000448428 NCOA2Q15596 1464 aa20.13■□□□□ 0.81
PRPF40A-203ENST00000448428 LRRC9Q6ZRR7 1453 aa20.13■□□□□ 0.81
PRPF40A-203ENST00000448428 KANK4Q5T7N3 995 aaPredicted RBP20.13■□□□□ 0.81
PRPF40A-203ENST00000448428 HECW2Q9P2P5 1572 aa20.12■□□□□ 0.81
PRPF40A-203ENST00000448428 MAP3K1Q13233 1512 aa20.12■□□□□ 0.81
PRPF40A-203ENST00000448428 MLH3Q9UHC1 1453 aa20.12■□□□□ 0.81
PRPF40A-203ENST00000448428 ZNF644Q9H582 1327 aaPredicted RBP20.11■□□□□ 0.81
PRPF40A-203ENST00000448428 SYCP2Q9BX26 1530 aa20.11■□□□□ 0.81
PRPF40A-203ENST00000448428 KIAA1107Q9UPP5 1409 aa20.1■□□□□ 0.81
PRPF40A-203ENST00000448428 C9orf84Q5VXU9 1444 aa20.1■□□□□ 0.81
PRPF40A-203ENST00000448428 PLEKHH2Q8IVE3 1493 aa20.09■□□□□ 0.81
PRPF40A-203ENST00000448428 KIDINS220Q9ULH0 1771 aa20.08■□□□□ 0.81
PRPF40A-203ENST00000448428 MADDQ8WXG6 1647 aa20.08■□□□□ 0.8
PRPF40A-203ENST00000448428 DIP2CQ9Y2E4 1556 aa20.08■□□□□ 0.8
PRPF40A-203ENST00000448428 ABCA6Q8N139 1617 aa20.07■□□□□ 0.8
PRPF40A-203ENST00000448428 MLECQ14165 292 aa20.07■□□□□ 0.8
PRPF40A-203ENST00000448428 PTPRMP28827 1452 aa20.05■□□□□ 0.8
PRPF40A-203ENST00000448428 APLP2Q06481 763 aa20.05■□□□□ 0.8
PRPF40A-203ENST00000448428 SPAG9O60271 1321 aaKnown RBP20.04■□□□□ 0.8
PRPF40A-203ENST00000448428 MBD5Q9P267 1494 aa20.03■□□□□ 0.8
PRPF40A-203ENST00000448428 RIMS1Q86UR5 1692 aaKnown RBP20.03■□□□□ 0.8
PRPF40A-203ENST00000448428 REREQ9P2R6 1566 aa20.02■□□□□ 0.8
PRPF40A-203ENST00000448428 FER1L4A9Z1Z3 1794 aa19.99■□□□□ 0.79
PRPF40A-203ENST00000448428 ATP7AQ04656 1500 aa19.99■□□□□ 0.79
PRPF40A-203ENST00000448428 CAMSAP2Q08AD1 1489 aa19.99■□□□□ 0.79
PRPF40A-203ENST00000448428 INO80Q9ULG1 1556 aaPredicted RBP19.98■□□□□ 0.79
PRPF40A-203ENST00000448428 AGLP35573 1532 aa19.97■□□□□ 0.79
PRPF40A-203ENST00000448428 RSPH4AQ5TD94 716 aa19.95■□□□□ 0.78
PRPF40A-203ENST00000448428 MYOM3Q5VTT5 1437 aa19.94■□□□□ 0.78
PRPF40A-203ENST00000448428 PLPPR3Q6T4P5 718 aa19.94■□□□□ 0.78
PRPF40A-203ENST00000448428 RTEL1-TNFRSF6BF6WH68 1400 aa19.93■□□□□ 0.78
PRPF40A-203ENST00000448428 MIA2Q96PC5 1412 aa19.92■□□□□ 0.78
PRPF40A-203ENST00000448428 CCDC141Q6ZP82 1450 aa19.92■□□□□ 0.78
PRPF40A-203ENST00000448428 A2MP01023 1474 aa19.91■□□□□ 0.78
PRPF40A-203ENST00000448428 ARHGEF5Q12774 1597 aa19.91■□□□□ 0.78
PRPF40A-203ENST00000448428 ADGBQ8N7X0 1667 aa19.91■□□□□ 0.78
PRPF40A-203ENST00000448428 PLXNC1O60486 1568 aa19.88■□□□□ 0.77
PRPF40A-203ENST00000448428 CEBPAP49715 358 aaPredicted RBP19.88■□□□□ 0.77
PRPF40A-203ENST00000448428 TSPY4P0CV99 314 aa19.87■□□□□ 0.77
PRPF40A-203ENST00000448428 TSPY10P0CW01 314 aa19.87■□□□□ 0.77
PRPF40A-203ENST00000448428 ESF1Q9H501 851 aaKnown RBP19.85■□□□□ 0.77
PRPF40A-203ENST00000448428 DHX29Q7Z478 1369 aaKnown RBP19.84■□□□□ 0.77
PRPF40A-203ENST00000448428 PTPN23Q9H3S7 1636 aa19.83■□□□□ 0.76
PRPF40A-203ENST00000448428 GGT6Q6P531 493 aa19.82■□□□□ 0.76
PRPF40A-203ENST00000448428 C3P01024 1663 aa19.81■□□□□ 0.76
PRPF40A-203ENST00000448428 LMTK3Q96Q04 1460 aa19.81■□□□□ 0.76
PRPF40A-203ENST00000448428 FGD6Q6ZV73 1430 aa19.81■□□□□ 0.76
PRPF40A-203ENST00000448428 MAST1Q9Y2H9 1570 aa19.8■□□□□ 0.76
PRPF40A-203ENST00000448428 CNTLNQ9NXG0 1405 aa19.79■□□□□ 0.76
PRPF40A-203ENST00000448428 SETD1BQ9UPS6 1966 aaKnown RBP19.79■□□□□ 0.76
PRPF40A-203ENST00000448428 KIF3BO15066 747 aa19.78■□□□□ 0.76
PRPF40A-203ENST00000448428 TCOF1Q13428 1488 aaKnown RBP19.78■□□□□ 0.76
PRPF40A-203ENST00000448428 CLTCQ00610 1675 aaKnown RBP19.77■□□□□ 0.76
PRPF40A-203ENST00000448428 ABCC5O15440 1437 aa19.76■□□□□ 0.75
PRPF40A-203ENST00000448428 MROH2AA6NES4 1674 aa19.76■□□□□ 0.75
PRPF40A-203ENST00000448428 ZMYM3Q14202 1370 aa19.76■□□□□ 0.75
PRPF40A-203ENST00000448428 PPP6R1Q9UPN7 881 aa19.76■□□□□ 0.75
PRPF40A-203ENST00000448428 HSPA2P54652 639 aa19.75■□□□□ 0.75
PRPF40A-203ENST00000448428 PREX1Q8TCU6 1659 aa19.75■□□□□ 0.75
PRPF40A-203ENST00000448428 CROCC2H7BZ55 1655 aa19.74■□□□□ 0.75
PRPF40A-203ENST00000448428 DNMT1P26358 1616 aaKnown RBP19.73■□□□□ 0.75
PRPF40A-203ENST00000448428 PPARGC1BQ86YN6 1023 aaKnown RBP19.73■□□□□ 0.75
PRPF40A-203ENST00000448428 DAPK1P53355 1430 aa19.73■□□□□ 0.75
PRPF40A-203ENST00000448428 FAM50AQ14320 339 aaKnown RBP19.7■□□□□ 0.74
PRPF40A-203ENST00000448428 SHANK2Q9UPX8 1470 aa19.7■□□□□ 0.74
PRPF40A-203ENST00000448428 RRP7BPQ9NSQ0 103 aa19.69■□□□□ 0.74
PRPF40A-203ENST00000448428 CHIC2Q9UKJ5 165 aa19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms