RNA–Protein interactions for RNA: ENST00000446225.5

MCF2-206, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-206ENST00000446225 PDAP1Q13442 181 aaKnown RBP10.25□□□□□ -0.77
MCF2-206ENST00000446225 NCAPD3P42695 1498 aa10.25□□□□□ -0.77
MCF2-206ENST00000446225 KCTD17Q8N5Z5 321 aa10.23□□□□□ -0.77
MCF2-206ENST00000446225 NCKAP5LQ9HCH0 1330 aa10.23□□□□□ -0.77
MCF2-206ENST00000446225 LARP6Q9BRS8 491 aaKnown RBP10.23□□□□□ -0.77
MCF2-206ENST00000446225 ARIH1Q9Y4X5 557 aaPredicted RBP10.23□□□□□ -0.77
MCF2-206ENST00000446225 RSF1Q96T23 1441 aaPredicted RBP10.22□□□□□ -0.77
MCF2-206ENST00000446225 SMARCA2P51531 1590 aa10.21□□□□□ -0.77
MCF2-206ENST00000446225 MLLT3P42568 568 aaPredicted RBP10.19□□□□□ -0.78
MCF2-206ENST00000446225 MYT1Q01538 1121 aa10.19□□□□□ -0.78
MCF2-206ENST00000446225 PEG3Q9GZU2 1588 aa10.19□□□□□ -0.78
MCF2-206ENST00000446225 PLEKHG3A1L390 1219 aa10.19□□□□□ -0.78
MCF2-206ENST00000446225 TRAK2O60296 914 aa10.19□□□□□ -0.78
MCF2-206ENST00000446225 SPDYE1Q8NFV5 336 aaPredicted RBP10.19□□□□□ -0.78
MCF2-206ENST00000446225 DDRGK1Q96HY6 314 aa10.19□□□□□ -0.78
MCF2-206ENST00000446225 CLUAP1Q96AJ1 413 aa10.18□□□□□ -0.78
MCF2-206ENST00000446225 BAZ1BQ9UIG0 1483 aaKnown RBP10.17□□□□□ -0.78
MCF2-206ENST00000446225 A6NJR5 290 aa10.17□□□□□ -0.78
MCF2-206ENST00000446225 PRR29P0C7W0 189 aa10.17□□□□□ -0.78
MCF2-206ENST00000446225 FBXO22Q8NEZ5 403 aa10.17□□□□□ -0.78
MCF2-206ENST00000446225 WIZO95785 1651 aa10.16□□□□□ -0.78
MCF2-206ENST00000446225 ONECUT3O60422 494 aaPredicted RBP10.16□□□□□ -0.78
MCF2-206ENST00000446225 PDE4AP27815 886 aa10.16□□□□□ -0.78
MCF2-206ENST00000446225 PCDHB8Q9UN66 801 aa10.16□□□□□ -0.78
MCF2-206ENST00000446225 PCDHB13Q9Y5F0 798 aa10.16□□□□□ -0.78
MCF2-206ENST00000446225 RAD21O60216 631 aa10.15□□□□□ -0.78
MCF2-206ENST00000446225 MFSD10Q14728 455 aa10.15□□□□□ -0.78
MCF2-206ENST00000446225 HMGXB3Q12766 1538 aa10.15□□□□□ -0.78
MCF2-206ENST00000446225 NLRP6P59044 892 aa10.15□□□□□ -0.79
MCF2-206ENST00000446225 DDX27Q96GQ7 796 aaKnown RBP10.15□□□□□ -0.79
MCF2-206ENST00000446225 PSEN1P49768 467 aa10.14□□□□□ -0.79
MCF2-206ENST00000446225 TRAIPQ9BWF2 469 aa10.14□□□□□ -0.79
MCF2-206ENST00000446225 CLEC11AQ9Y240 323 aa10.14□□□□□ -0.79
MCF2-206ENST00000446225 CAMK2BQ13554 666 aa10.11□□□□□ -0.79
MCF2-206ENST00000446225 AEBP1Q8IUX7 1158 aa10.11□□□□□ -0.79
MCF2-206ENST00000446225 PHF8Q9UPP1 1060 aa10.11□□□□□ -0.79
MCF2-206ENST00000446225 EFCAB3Q8N7B9 438 aa10.1□□□□□ -0.79
MCF2-206ENST00000446225 CRISPLD2Q9H0B8 497 aa10.1□□□□□ -0.79
MCF2-206ENST00000446225 LOC105371045A0A1W2PR82 267 aa10.09□□□□□ -0.79
MCF2-206ENST00000446225 GOPCQ9HD26 462 aa10.08□□□□□ -0.8
MCF2-206ENST00000446225 SOX12O15370 315 aa10.07□□□□□ -0.8
MCF2-206ENST00000446225 RGS22Q8NE09 1264 aa10.07□□□□□ -0.8
MCF2-206ENST00000446225 TSPYL2Q9H2G4 693 aaPredicted RBP10.07□□□□□ -0.8
MCF2-206ENST00000446225 PARP9Q8IXQ6 854 aa10.05□□□□□ -0.8
MCF2-206ENST00000446225 ZNF777Q9ULD5 760 aaPredicted RBP10.05□□□□□ -0.8
MCF2-206ENST00000446225 MINK1Q8N4C8 1332 aaPredicted RBP10.05□□□□□ -0.8
MCF2-206ENST00000446225 TOP2AP11388 1531 aaKnown RBP10.05□□□□□ -0.8
MCF2-206ENST00000446225 GPR37O15354 613 aa10.04□□□□□ -0.8
MCF2-206ENST00000446225 TMCO4Q5TGY1 634 aa10.04□□□□□ -0.8
MCF2-206ENST00000446225 CABP2Q9NPB3 220 aa10.04□□□□□ -0.8
MCF2-206ENST00000446225 MTMR7Q9Y216 660 aa10.04□□□□□ -0.8
MCF2-206ENST00000446225 AMHR2Q16671 573 aa10.03□□□□□ -0.8
MCF2-206ENST00000446225 CCDC102AQ96A19 550 aa10.03□□□□□ -0.8
MCF2-206ENST00000446225 CCDC97Q96F63 343 aaPredicted RBP10.03□□□□□ -0.8
MCF2-206ENST00000446225 MCM6Q14566 821 aa10.03□□□□□ -0.8
MCF2-206ENST00000446225 SERPINA10Q9UK55 444 aa10.03□□□□□ -0.8
MCF2-206ENST00000446225 ZNF579Q8NAF0 562 aaKnown RBP10.02□□□□□ -0.81
MCF2-206ENST00000446225 PROSER2Q86WR7 435 aaPredicted RBP10.01□□□□□ -0.81
MCF2-206ENST00000446225 NESP48681 1621 aa10□□□□□ -0.81
MCF2-206ENST00000446225 MAP2K5Q13163 448 aa10□□□□□ -0.81
MCF2-206ENST00000446225 PCMTD1Q96MG8 357 aaPredicted RBP10□□□□□ -0.81
MCF2-206ENST00000446225 IGSF3O75054 1194 aa9.99□□□□□ -0.81
MCF2-206ENST00000446225 IRF6O14896 467 aa9.99□□□□□ -0.81
MCF2-206ENST00000446225 MFAP1P55081 439 aaKnown RBP9.98□□□□□ -0.81
MCF2-206ENST00000446225 CCDC88BA6NC98 1476 aa9.98□□□□□ -0.81
MCF2-206ENST00000446225 RETREG2Q8NC44 543 aa9.97□□□□□ -0.81
MCF2-206ENST00000446225 GZF1Q9H116 711 aaPredicted RBP9.97□□□□□ -0.81
MCF2-206ENST00000446225 TTLL12Q14166 644 aaPredicted RBP9.97□□□□□ -0.81
MCF2-206ENST00000446225 CADPSQ9ULU8 1353 aa9.97□□□□□ -0.81
MCF2-206ENST00000446225 DPYSL4O14531 572 aa9.96□□□□□ -0.81
MCF2-206ENST00000446225 RBM25P49756 843 aaKnown RBP9.96□□□□□ -0.81
MCF2-206ENST00000446225 FOXD4L5Q5VV16 416 aaPredicted RBP9.96□□□□□ -0.81
MCF2-206ENST00000446225 FOXD4L4Q8WXT5 416 aaPredicted RBP9.96□□□□□ -0.81
MCF2-206ENST00000446225 FNBP4Q8N3X1 1017 aaPredicted RBP9.95□□□□□ -0.82
MCF2-206ENST00000446225 PDIA6Q15084 440 aa9.94□□□□□ -0.82
MCF2-206ENST00000446225 ZNF428Q96B54 188 aa9.94□□□□□ -0.82
MCF2-206ENST00000446225 SPDYE16A6NNV3 312 aaPredicted RBP9.94□□□□□ -0.82
MCF2-206ENST00000446225 POM121Q96HA1 1249 aa9.94□□□□□ -0.82
MCF2-206ENST00000446225 MS4A4AQ96JQ5 239 aa9.94□□□□□ -0.82
MCF2-206ENST00000446225 PPP1R15BQ5SWA1 713 aa9.92□□□□□ -0.82
MCF2-206ENST00000446225 AKT1S1Q96B36 256 aa9.92□□□□□ -0.82
MCF2-206ENST00000446225 NUTM2FA1L443 756 aa9.92□□□□□ -0.82
MCF2-206ENST00000446225 LAMC3Q9Y6N6 1575 aa9.91□□□□□ -0.82
MCF2-206ENST00000446225 ERCC6Q03468 1493 aa9.91□□□□□ -0.82
MCF2-206ENST00000446225 IRF5Q13568 498 aa9.91□□□□□ -0.82
MCF2-206ENST00000446225 IFNL1Q8IU54 200 aa9.91□□□□□ -0.82
MCF2-206ENST00000446225 CCDC61Q9Y6R9 512 aa9.91□□□□□ -0.82
MCF2-206ENST00000446225 CFTRP13569 1480 aa9.9□□□□□ -0.82
MCF2-206ENST00000446225 PDS5BQ9NTI5 1447 aa9.89□□□□□ -0.83
MCF2-206ENST00000446225 GIGYF2Q6Y7W6 1299 aaKnown RBP9.89□□□□□ -0.83
MCF2-206ENST00000446225 FBXW7Q969H0 707 aa9.89□□□□□ -0.83
MCF2-206ENST00000446225 EMILIN3Q9NT22 766 aa9.89□□□□□ -0.83
MCF2-206ENST00000446225 MS4A1P11836 297 aa9.88□□□□□ -0.83
MCF2-206ENST00000446225 PLSCR2Q9NRY7 297 aa9.88□□□□□ -0.83
MCF2-206ENST00000446225 GNPATO15228 680 aa9.88□□□□□ -0.83
MCF2-206ENST00000446225 SH3D19Q5HYK7 790 aa9.86□□□□□ -0.83
MCF2-206ENST00000446225 REM2Q8IYK8 340 aaPredicted RBP9.86□□□□□ -0.83
MCF2-206ENST00000446225 FECHP22830 423 aa9.85□□□□□ -0.83
MCF2-206ENST00000446225 GPHNQ9NQX3 736 aaPredicted RBP9.84□□□□□ -0.83
MCF2-206ENST00000446225 FANCD2Q9BXW9 1451 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms