RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 PTPN23Q9H3S7 1636 aa31.59■■■□□ 2.65
CHD3-204ENST00000439235 ARHGAP5Q13017 1502 aa31.59■■■□□ 2.65
CHD3-204ENST00000439235 TCOF1Q13428 1488 aaKnown RBP31.59■■■□□ 2.65
CHD3-204ENST00000439235 CD109Q6YHK3 1445 aa31.58■■■□□ 2.65
CHD3-204ENST00000439235 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.56■■■□□ 2.64
CHD3-204ENST00000439235 CDC42BPBQ9Y5S2 1711 aa31.56■■■□□ 2.64
CHD3-204ENST00000439235 FAM69CQ0P6D2 419 aa31.56■■■□□ 2.64
CHD3-204ENST00000439235 MAP3K4Q9Y6R4 1608 aa31.56■■■□□ 2.64
CHD3-204ENST00000439235 FAM50AQ14320 339 aaKnown RBP31.52■■■□□ 2.64
CHD3-204ENST00000439235 CAMSAP2Q08AD1 1489 aa31.52■■■□□ 2.64
CHD3-204ENST00000439235 EFCAB2Q5VUJ9 269 aa31.5■■■□□ 2.63
CHD3-204ENST00000439235 ZNF777Q9ULD5 760 aaPredicted RBP31.48■■■□□ 2.63
CHD3-204ENST00000439235 CFAP74Q9C0B2 1584 aa31.47■■■□□ 2.63
CHD3-204ENST00000439235 FANCAO15360 1455 aa31.47■■■□□ 2.63
CHD3-204ENST00000439235 KIF13AQ9H1H9 1805 aa31.47■■■□□ 2.63
CHD3-204ENST00000439235 SAMD9LQ8IVG5 1584 aa31.47■■■□□ 2.63
CHD3-204ENST00000439235 PLEKHH2Q8IVE3 1493 aa31.46■■■□□ 2.63
CHD3-204ENST00000439235 ZNF644Q9H582 1327 aaPredicted RBP31.43■■■□□ 2.62
CHD3-204ENST00000439235 NEO1Q92859 1461 aa31.4■■■□□ 2.62
CHD3-204ENST00000439235 KIAA1107Q9UPP5 1409 aa31.39■■■□□ 2.62
CHD3-204ENST00000439235 TEX14Q8IWB6 1497 aa31.39■■■□□ 2.62
CHD3-204ENST00000439235 ABCC1P33527 1531 aa31.39■■■□□ 2.61
CHD3-204ENST00000439235 DNMT1P26358 1616 aaKnown RBP31.35■■■□□ 2.61
CHD3-204ENST00000439235 SYCP2Q9BX26 1530 aa31.35■■■□□ 2.61
CHD3-204ENST00000439235 AKNAQ7Z591 1439 aa31.35■■■□□ 2.61
CHD3-204ENST00000439235 PCGF6Q9BYE7 350 aa31.35■■■□□ 2.61
CHD3-204ENST00000439235 ARHGEF5Q12774 1597 aa31.34■■■□□ 2.61
CHD3-204ENST00000439235 ADGRL1O94910 1474 aa31.33■■■□□ 2.61
CHD3-204ENST00000439235 PPRC1Q5VV67 1664 aaKnown RBP31.32■■■□□ 2.6
CHD3-204ENST00000439235 DAPK1P53355 1430 aa31.32■■■□□ 2.6
CHD3-204ENST00000439235 MBD5Q9P267 1494 aa31.31■■■□□ 2.6
CHD3-204ENST00000439235 ITGAEP38570 1179 aa31.3■■■□□ 2.6
CHD3-204ENST00000439235 RSPH4AQ5TD94 716 aa31.3■■■□□ 2.6
CHD3-204ENST00000439235 CCDC141Q6ZP82 1450 aa31.29■■■□□ 2.6
CHD3-204ENST00000439235 ABCC5O15440 1437 aa31.28■■■□□ 2.6
CHD3-204ENST00000439235 TSPOAP1O95153 1857 aa31.28■■■□□ 2.6
CHD3-204ENST00000439235 HNRNPMP52272 730 aaKnown RBP eCLIP31.27■■■□□ 2.6
CHD3-204ENST00000439235 ARHGEF12Q9NZN5 1544 aa31.27■■■□□ 2.6
CHD3-204ENST00000439235 SCAPERQ9BY12 1400 aa31.26■■■□□ 2.6
CHD3-204ENST00000439235 CROCC2H7BZ55 1655 aa31.25■■■□□ 2.59
CHD3-204ENST00000439235 SHANK2Q9UPX8 1470 aa31.25■■■□□ 2.59
CHD3-204ENST00000439235 PTPRKQ15262 1439 aa31.21■■■□□ 2.59
CHD3-204ENST00000439235 TRAPPC8Q9Y2L5 1435 aa31.19■■■□□ 2.58
CHD3-204ENST00000439235 TSPY4P0CV99 314 aa31.18■■■□□ 2.58
CHD3-204ENST00000439235 TSPY10P0CW01 314 aa31.18■■■□□ 2.58
CHD3-204ENST00000439235 DENND4BO75064 1496 aaPredicted RBP31.18■■■□□ 2.58
CHD3-204ENST00000439235 C9orf84Q5VXU9 1444 aa31.17■■■□□ 2.58
CHD3-204ENST00000439235 POGZQ7Z3K3 1410 aa31.17■■■□□ 2.58
CHD3-204ENST00000439235 ZNF518AQ6AHZ1 1483 aa31.17■■■□□ 2.58
CHD3-204ENST00000439235 MAST1Q9Y2H9 1570 aa31.16■■■□□ 2.58
CHD3-204ENST00000439235 ROCK1Q13464 1354 aa31.14■■■□□ 2.58
CHD3-204ENST00000439235 ADGRL2O95490 1459 aa31.13■■■□□ 2.57
CHD3-204ENST00000439235 ADGBQ8N7X0 1667 aa31.13■■■□□ 2.57
CHD3-204ENST00000439235 CHIC2Q9UKJ5 165 aa31.11■■■□□ 2.57
CHD3-204ENST00000439235 KDM5CP41229 1560 aa31.09■■■□□ 2.57
CHD3-204ENST00000439235 ANKRD30AQ9BXX3 1397 aa31.09■■■□□ 2.57
CHD3-204ENST00000439235 AFAP1Q8N556 730 aa31.09■■■□□ 2.57
CHD3-204ENST00000439235 SPAG9O60271 1321 aaKnown RBP31.08■■■□□ 2.57
CHD3-204ENST00000439235 RTEL1-TNFRSF6BF6WH68 1400 aa31.07■■■□□ 2.57
CHD3-204ENST00000439235 HFM1A2PYH4 1435 aa31.07■■■□□ 2.56
CHD3-204ENST00000439235 RICTORQ6R327 1708 aa31.06■■■□□ 2.56
CHD3-204ENST00000439235 INO80Q9ULG1 1556 aaPredicted RBP31.05■■■□□ 2.56
CHD3-204ENST00000439235 ZFYVE16Q7Z3T8 1539 aa31.05■■■□□ 2.56
CHD3-204ENST00000439235 NCOA1Q15788 1441 aa31.04■■■□□ 2.56
CHD3-204ENST00000439235 PLXNC1O60486 1568 aa31.04■■■□□ 2.56
CHD3-204ENST00000439235 ATP7AQ04656 1500 aa31.03■■■□□ 2.56
CHD3-204ENST00000439235 FRMPD1Q5SYB0 1578 aa31.03■■■□□ 2.56
CHD3-204ENST00000439235 HECW2Q9P2P5 1572 aa31.01■■■□□ 2.56
CHD3-204ENST00000439235 GCC2Q8IWJ2 1684 aa31.01■■■□□ 2.55
CHD3-204ENST00000439235 RAPGEF3O95398 923 aa31.01■■■□□ 2.55
CHD3-204ENST00000439235 MLH3Q9UHC1 1453 aa31.01■■■□□ 2.55
CHD3-204ENST00000439235 NAIPQ13075 1403 aa31■■■□□ 2.55
CHD3-204ENST00000439235 ZMYM4Q5VZL5 1548 aa31■■■□□ 2.55
CHD3-204ENST00000439235 RRP7BPQ9NSQ0 103 aa31■■■□□ 2.55
CHD3-204ENST00000439235 SETD5Q9C0A6 1442 aa30.99■■■□□ 2.55
CHD3-204ENST00000439235 KIF15Q9NS87 1388 aa30.97■■■□□ 2.55
CHD3-204ENST00000439235 MYT1LQ9UL68 1186 aa30.97■■■□□ 2.55
CHD3-204ENST00000439235 COL17A1Q9UMD9 1497 aaPredicted RBP30.95■■■□□ 2.55
CHD3-204ENST00000439235 KIDINS220Q9ULH0 1771 aa30.93■■■□□ 2.54
CHD3-204ENST00000439235 MAGI2Q86UL8 1455 aa30.93■■■□□ 2.54
CHD3-204ENST00000439235 KDM6BO15054 1643 aa30.92■■■□□ 2.54
CHD3-204ENST00000439235 DUOX2Q9NRD8 1548 aa30.91■■■□□ 2.54
CHD3-204ENST00000439235 RAB3GAP2Q9H2M9 1393 aa30.9■■■□□ 2.54
CHD3-204ENST00000439235 ANKRD50Q9ULJ7 1429 aa30.88■■■□□ 2.53
CHD3-204ENST00000439235 ABCA6Q8N139 1617 aa30.85■■■□□ 2.53
CHD3-204ENST00000439235 ERBINQ96RT1 1412 aa30.84■■■□□ 2.53
CHD3-204ENST00000439235 HRCP23327 699 aa30.84■■■□□ 2.53
CHD3-204ENST00000439235 DIP2CQ9Y2E4 1556 aa30.83■■■□□ 2.53
CHD3-204ENST00000439235 ACIN1Q9UKV3 1341 aaKnown RBP30.82■■■□□ 2.52
CHD3-204ENST00000439235 YEATS2Q9ULM3 1422 aa30.81■■■□□ 2.52
CHD3-204ENST00000439235 A2MP01023 1474 aa30.8■■■□□ 2.52
CHD3-204ENST00000439235 ARHGEF40Q8TER5 1519 aa30.79■■■□□ 2.52
CHD3-204ENST00000439235 DHX29Q7Z478 1369 aaKnown RBP30.79■■■□□ 2.52
CHD3-204ENST00000439235 EIF2AK4Q9P2K8 1649 aaKnown RBP30.75■■■□□ 2.51
CHD3-204ENST00000439235 ATP10AO60312 1499 aa30.74■■■□□ 2.51
CHD3-204ENST00000439235 REREQ9P2R6 1566 aa30.72■■■□□ 2.51
CHD3-204ENST00000439235 UNC13BO14795 1591 aa30.66■■■□□ 2.5
CHD3-204ENST00000439235 BCORL1Q5H9F3 1711 aa30.65■■■□□ 2.5
CHD3-204ENST00000439235 TRIM52Q96A61 297 aa30.64■■■□□ 2.5
CHD3-204ENST00000439235 AGLP35573 1532 aa30.62■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms