RNA–Protein interactions for RNA: ENST00000438647.3

RAPGEF1-206, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

TSL 3

Gene RAPGEF1, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-206ENST00000438647 SCAPERQ9BY12 1400 aa39.36■■■■□ 3.89
RAPGEF1-206ENST00000438647 VPS8Q8N3P4 1428 aa39.35■■■■□ 3.89
RAPGEF1-206ENST00000438647 PREX2Q70Z35 1606 aa39.32■■■■□ 3.88
RAPGEF1-206ENST00000438647 POGZQ7Z3K3 1410 aa39.3■■■■□ 3.88
RAPGEF1-206ENST00000438647 CDC42BPBQ9Y5S2 1711 aa39.28■■■■□ 3.88
RAPGEF1-206ENST00000438647 ZMYM4Q5VZL5 1548 aa39.28■■■■□ 3.88
RAPGEF1-206ENST00000438647 EHBP1L1Q8N3D4 1523 aa39.26■■■■□ 3.88
RAPGEF1-206ENST00000438647 MAGI2Q86UL8 1455 aa39.24■■■■□ 3.87
RAPGEF1-206ENST00000438647 CDC42BPAQ5VT25 1732 aa39.23■■■■□ 3.87
RAPGEF1-206ENST00000438647 ARHGEF40Q8TER5 1519 aa39.23■■■■□ 3.87
RAPGEF1-206ENST00000438647 GPATCH8Q9UKJ3 1502 aaKnown RBP39.19■■■■□ 3.86
RAPGEF1-206ENST00000438647 ZNF518AQ6AHZ1 1483 aa39.19■■■■□ 3.86
RAPGEF1-206ENST00000438647 CCNB3Q8WWL7 1395 aa39.19■■■■□ 3.86
RAPGEF1-206ENST00000438647 ZFYVE16Q7Z3T8 1539 aa39.17■■■■□ 3.86
RAPGEF1-206ENST00000438647 TIAM1Q13009 1591 aa39.15■■■■□ 3.86
RAPGEF1-206ENST00000438647 ABCC1P33527 1531 aa39.14■■■■□ 3.86
RAPGEF1-206ENST00000438647 CFDP1Q9UEE9 299 aaPredicted RBP39.1■■■■□ 3.85
RAPGEF1-206ENST00000438647 YEATS2Q9ULM3 1422 aa39.1■■■■□ 3.85
RAPGEF1-206ENST00000438647 ARID4BQ4LE39 1312 aaPredicted RBP39.09■■■■□ 3.85
RAPGEF1-206ENST00000438647 KDM5CP41229 1560 aa39.08■■■■□ 3.85
RAPGEF1-206ENST00000438647 AFAP1Q8N556 730 aa39.08■■■■□ 3.85
RAPGEF1-206ENST00000438647 ZNF777Q9ULD5 760 aaPredicted RBP39.08■■■■□ 3.85
RAPGEF1-206ENST00000438647 MAP3K1Q13233 1512 aa39.05■■■■□ 3.84
RAPGEF1-206ENST00000438647 ITSN2Q9NZM3 1697 aa39.04■■■■□ 3.84
RAPGEF1-206ENST00000438647 ARHGEF12Q9NZN5 1544 aa39.03■■■■□ 3.84
RAPGEF1-206ENST00000438647 SAMD9LQ8IVG5 1584 aa39.03■■■■□ 3.84
RAPGEF1-206ENST00000438647 SUPT6HQ7KZ85 1726 aaKnown RBP39.03■■■■□ 3.84
RAPGEF1-206ENST00000438647 PLEKHH2Q8IVE3 1493 aa39.02■■■■□ 3.84
RAPGEF1-206ENST00000438647 LRRC9Q6ZRR7 1453 aa39.01■■■■□ 3.84
RAPGEF1-206ENST00000438647 TRAPPC8Q9Y2L5 1435 aa39.01■■■■□ 3.84
RAPGEF1-206ENST00000438647 MYT1LQ9UL68 1186 aa39■■■■□ 3.83
RAPGEF1-206ENST00000438647 HECW2Q9P2P5 1572 aa38.99■■■■□ 3.83
RAPGEF1-206ENST00000438647 NCOA2Q15596 1464 aa38.99■■■■□ 3.83
RAPGEF1-206ENST00000438647 ATP10AO60312 1499 aa38.98■■■■□ 3.83
RAPGEF1-206ENST00000438647 MLH3Q9UHC1 1453 aa38.98■■■■□ 3.83
RAPGEF1-206ENST00000438647 KIAA1107Q9UPP5 1409 aa38.97■■■■□ 3.83
RAPGEF1-206ENST00000438647 SYCP2Q9BX26 1530 aa38.95■■■■□ 3.83
RAPGEF1-206ENST00000438647 BCORL1Q5H9F3 1711 aa38.95■■■■□ 3.83
RAPGEF1-206ENST00000438647 C9orf84Q5VXU9 1444 aa38.95■■■■□ 3.83
RAPGEF1-206ENST00000438647 APLP2Q06481 763 aa38.94■■■■□ 3.82
RAPGEF1-206ENST00000438647 ADAMTSL3P82987 1691 aa38.93■■■■□ 3.82
RAPGEF1-206ENST00000438647 HNRNPMP52272 730 aaKnown RBP eCLIP38.9■■■■□ 3.825e-6■■■□□ 17.8
RAPGEF1-206ENST00000438647 KANK4Q5T7N3 995 aaPredicted RBP38.86■■■■□ 3.81
RAPGEF1-206ENST00000438647 DIP2CQ9Y2E4 1556 aa38.85■■■■□ 3.81
RAPGEF1-206ENST00000438647 SPAG9O60271 1321 aaKnown RBP38.83■■■■□ 3.81
RAPGEF1-206ENST00000438647 SIGLEC1Q9BZZ2 1709 aa38.83■■■■□ 3.81
RAPGEF1-206ENST00000438647 REREQ9P2R6 1566 aa38.81■■■■□ 3.8
RAPGEF1-206ENST00000438647 ZNF644Q9H582 1327 aaPredicted RBP38.81■■■■□ 3.8
RAPGEF1-206ENST00000438647 ABCA6Q8N139 1617 aa38.81■■■■□ 3.8
RAPGEF1-206ENST00000438647 MADDQ8WXG6 1647 aa38.8■■■■□ 3.8
RAPGEF1-206ENST00000438647 KIDINS220Q9ULH0 1771 aa38.79■■■■□ 3.8
RAPGEF1-206ENST00000438647 PTPRMP28827 1452 aa38.79■■■■□ 3.8
RAPGEF1-206ENST00000438647 MLECQ14165 292 aa38.75■■■■□ 3.79
RAPGEF1-206ENST00000438647 MBD5Q9P267 1494 aa38.74■■■■□ 3.79
RAPGEF1-206ENST00000438647 CAMSAP2Q08AD1 1489 aa38.73■■■■□ 3.79
RAPGEF1-206ENST00000438647 ATP7AQ04656 1500 aa38.72■■■■□ 3.79
RAPGEF1-206ENST00000438647 RSPH4AQ5TD94 716 aa38.69■■■■□ 3.78
RAPGEF1-206ENST00000438647 INO80Q9ULG1 1556 aaPredicted RBP38.69■■■■□ 3.78
RAPGEF1-206ENST00000438647 AGLP35573 1532 aa38.68■■■■□ 3.78
RAPGEF1-206ENST00000438647 RIMS1Q86UR5 1692 aaKnown RBP38.68■■■■□ 3.78
RAPGEF1-206ENST00000438647 MYOM3Q5VTT5 1437 aa38.67■■■■□ 3.78
RAPGEF1-206ENST00000438647 MIA2Q96PC5 1412 aa38.65■■■■□ 3.78
RAPGEF1-206ENST00000438647 CCDC141Q6ZP82 1450 aa38.65■■■■□ 3.78
RAPGEF1-206ENST00000438647 FER1L4A9Z1Z3 1794 aa38.62■■■■□ 3.77
RAPGEF1-206ENST00000438647 RTEL1-TNFRSF6BF6WH68 1400 aa38.62■■■■□ 3.77
RAPGEF1-206ENST00000438647 ARHGEF5Q12774 1597 aa38.58■■■■□ 3.77
RAPGEF1-206ENST00000438647 A2MP01023 1474 aa38.55■■■■□ 3.76
RAPGEF1-206ENST00000438647 TSPY4P0CV99 314 aa38.52■■■■□ 3.76
RAPGEF1-206ENST00000438647 TSPY10P0CW01 314 aa38.52■■■■□ 3.76
RAPGEF1-206ENST00000438647 PLXNC1O60486 1568 aa38.51■■■■□ 3.76
RAPGEF1-206ENST00000438647 ADGBQ8N7X0 1667 aa38.51■■■■□ 3.76
RAPGEF1-206ENST00000438647 ESF1Q9H501 851 aaKnown RBP38.49■■■■□ 3.75
RAPGEF1-206ENST00000438647 PLPPR3Q6T4P5 718 aa38.46■■■■□ 3.75
RAPGEF1-206ENST00000438647 FGD6Q6ZV73 1430 aa38.41■■■■□ 3.74
RAPGEF1-206ENST00000438647 DHX29Q7Z478 1369 aaKnown RBP38.41■■■■□ 3.74
RAPGEF1-206ENST00000438647 CNTLNQ9NXG0 1405 aa38.4■■■■□ 3.74
RAPGEF1-206ENST00000438647 PTPN23Q9H3S7 1636 aa38.4■■■■□ 3.74
RAPGEF1-206ENST00000438647 MAST1Q9Y2H9 1570 aa38.37■■■■□ 3.73
RAPGEF1-206ENST00000438647 TCOF1Q13428 1488 aaKnown RBP38.33■■■■□ 3.73
RAPGEF1-206ENST00000438647 CEBPAP49715 358 aaPredicted RBP38.32■■■■□ 3.72
RAPGEF1-206ENST00000438647 GGT6Q6P531 493 aa38.32■■■■□ 3.72
RAPGEF1-206ENST00000438647 PPP6R1Q9UPN7 881 aa38.31■■■■□ 3.72
RAPGEF1-206ENST00000438647 LMTK3Q96Q04 1460 aa38.29■■■■□ 3.72
RAPGEF1-206ENST00000438647 SHANK2Q9UPX8 1470 aa38.27■■■■□ 3.72
RAPGEF1-206ENST00000438647 KIF3BO15066 747 aa38.25■■■■□ 3.71
RAPGEF1-206ENST00000438647 C3P01024 1663 aa38.25■■■■□ 3.71
RAPGEF1-206ENST00000438647 ABCC5O15440 1437 aa38.24■■■■□ 3.71
RAPGEF1-206ENST00000438647 MROH2AA6NES4 1674 aa38.23■■■■□ 3.71
RAPGEF1-206ENST00000438647 DAPK1P53355 1430 aa38.21■■■■□ 3.71
RAPGEF1-206ENST00000438647 DNMT1P26358 1616 aaKnown RBP38.21■■■■□ 3.71
RAPGEF1-206ENST00000438647 CROCC2H7BZ55 1655 aa38.2■■■■□ 3.71
RAPGEF1-206ENST00000438647 ZMYM3Q14202 1370 aa38.19■■■■□ 3.7
RAPGEF1-206ENST00000438647 SETD1BQ9UPS6 1966 aaKnown RBP38.18■■■■□ 3.7
RAPGEF1-206ENST00000438647 CLTCQ00610 1675 aaKnown RBP38.17■■■■□ 3.7
RAPGEF1-206ENST00000438647 PREX1Q8TCU6 1659 aa38.17■■■■□ 3.7
RAPGEF1-206ENST00000438647 FAM135AQ9P2D6 1515 aa38.14■■■■□ 3.7
RAPGEF1-206ENST00000438647 FAM50AQ14320 339 aaKnown RBP38.14■■■■□ 3.7
RAPGEF1-206ENST00000438647 UHRF1BP1Q6BDS2 1440 aa38.13■■■■□ 3.7
RAPGEF1-206ENST00000438647 DUOX2Q9NRD8 1548 aa38.13■■■■□ 3.69
RAPGEF1-206ENST00000438647 KIF15Q9NS87 1388 aa38.12■■■■□ 3.69
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms