RNA–Protein interactions for RNA: ENST00000438518.5

HDAC6-208, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-208ENST00000438518 MYOM3Q5VTT5 1437 aa28.44■■■□□ 2.14
HDAC6-208ENST00000438518 ARHGAP5Q13017 1502 aa28.43■■■□□ 2.14
HDAC6-208ENST00000438518 MIA2Q96PC5 1412 aa28.43■■■□□ 2.14
HDAC6-208ENST00000438518 NEO1Q92859 1461 aa28.42■■■□□ 2.14
HDAC6-208ENST00000438518 FANCAO15360 1455 aa28.4■■■□□ 2.14
HDAC6-208ENST00000438518 PHLDB1Q86UU1 1377 aa28.4■■■□□ 2.14
HDAC6-208ENST00000438518 EFCAB2Q5VUJ9 269 aa28.38■■■□□ 2.13
HDAC6-208ENST00000438518 CFDP1Q9UEE9 299 aaPredicted RBP28.36■■■□□ 2.13
HDAC6-208ENST00000438518 PPARGC1BQ86YN6 1023 aaKnown RBP28.34■■■□□ 2.13
HDAC6-208ENST00000438518 FGD6Q6ZV73 1430 aa28.34■■■□□ 2.13
HDAC6-208ENST00000438518 PLEKHH2Q8IVE3 1493 aa28.34■■■□□ 2.13
HDAC6-208ENST00000438518 SAMD9LQ8IVG5 1584 aa28.32■■■□□ 2.12
HDAC6-208ENST00000438518 PTPN23Q9H3S7 1636 aa28.3■■■□□ 2.12
HDAC6-208ENST00000438518 AKNAQ7Z591 1439 aa28.3■■■□□ 2.12
HDAC6-208ENST00000438518 ABCC1P33527 1531 aa28.29■■■□□ 2.12
HDAC6-208ENST00000438518 TCOF1Q13428 1488 aaKnown RBP28.27■■■□□ 2.12
HDAC6-208ENST00000438518 ADGRL1O94910 1474 aa28.27■■■□□ 2.12
HDAC6-208ENST00000438518 CAMSAP2Q08AD1 1489 aa28.27■■■□□ 2.12
HDAC6-208ENST00000438518 KIAA1107Q9UPP5 1409 aa28.26■■■□□ 2.12
HDAC6-208ENST00000438518 RRBP1Q9P2E9 1410 aaKnown RBP28.25■■■□□ 2.11
HDAC6-208ENST00000438518 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.23■■■□□ 2.11
HDAC6-208ENST00000438518 ZNF777Q9ULD5 760 aaPredicted RBP28.2■■■□□ 2.1
HDAC6-208ENST00000438518 ARHGEF5Q12774 1597 aa28.2■■■□□ 2.1
HDAC6-208ENST00000438518 SYCP2Q9BX26 1530 aa28.19■■■□□ 2.1
HDAC6-208ENST00000438518 DENND4BO75064 1496 aaPredicted RBP28.18■■■□□ 2.1
HDAC6-208ENST00000438518 KDM6BO15054 1643 aa28.18■■■□□ 2.1
HDAC6-208ENST00000438518 SCAPERQ9BY12 1400 aa28.18■■■□□ 2.1
HDAC6-208ENST00000438518 RSPH4AQ5TD94 716 aa28.17■■■□□ 2.1
HDAC6-208ENST00000438518 RICTORQ6R327 1708 aa28.16■■■□□ 2.1
HDAC6-208ENST00000438518 ZNF518AQ6AHZ1 1483 aa28.15■■■□□ 2.1
HDAC6-208ENST00000438518 MBD5Q9P267 1494 aa28.15■■■□□ 2.1
HDAC6-208ENST00000438518 POGZQ7Z3K3 1410 aa28.14■■■□□ 2.1
HDAC6-208ENST00000438518 ARHGEF12Q9NZN5 1544 aa28.13■■■□□ 2.09
HDAC6-208ENST00000438518 DNMT1P26358 1616 aaKnown RBP28.13■■■□□ 2.09
HDAC6-208ENST00000438518 CCDC141Q6ZP82 1450 aa28.13■■■□□ 2.09
HDAC6-208ENST00000438518 ZNF644Q9H582 1327 aaPredicted RBP28.13■■■□□ 2.09
HDAC6-208ENST00000438518 KDM5CP41229 1560 aa28.11■■■□□ 2.09
HDAC6-208ENST00000438518 CROCC2H7BZ55 1655 aa28.1■■■□□ 2.09
HDAC6-208ENST00000438518 ZMYM4Q5VZL5 1548 aa28.09■■■□□ 2.09
HDAC6-208ENST00000438518 FRMPD1Q5SYB0 1578 aa28.09■■■□□ 2.09
HDAC6-208ENST00000438518 FAM50AQ14320 339 aaKnown RBP28.07■■■□□ 2.08
HDAC6-208ENST00000438518 HNRNPMP52272 730 aaKnown RBP eCLIP28.06■■■□□ 2.08
HDAC6-208ENST00000438518 TRAPPC8Q9Y2L5 1435 aa28.06■■■□□ 2.08
HDAC6-208ENST00000438518 COL17A1Q9UMD9 1497 aaPredicted RBP28.06■■■□□ 2.08
HDAC6-208ENST00000438518 SHANK2Q9UPX8 1470 aa28.06■■■□□ 2.08
HDAC6-208ENST00000438518 MAST1Q9Y2H9 1570 aa28.05■■■□□ 2.08
HDAC6-208ENST00000438518 DAPK1P53355 1430 aa28.04■■■□□ 2.08
HDAC6-208ENST00000438518 HECW2Q9P2P5 1572 aa28.03■■■□□ 2.08
HDAC6-208ENST00000438518 MAGI2Q86UL8 1455 aa28.03■■■□□ 2.08
HDAC6-208ENST00000438518 MLH3Q9UHC1 1453 aa28.02■■■□□ 2.08
HDAC6-208ENST00000438518 INO80Q9ULG1 1556 aaPredicted RBP28.01■■■□□ 2.07
HDAC6-208ENST00000438518 RTEL1-TNFRSF6BF6WH68 1400 aa28.01■■■□□ 2.07
HDAC6-208ENST00000438518 ABCC5O15440 1437 aa28.01■■■□□ 2.07
HDAC6-208ENST00000438518 RAPGEF3O95398 923 aa27.99■■■□□ 2.07
HDAC6-208ENST00000438518 TSPY4P0CV99 314 aa27.99■■■□□ 2.07
HDAC6-208ENST00000438518 TSPY10P0CW01 314 aa27.99■■■□□ 2.07
HDAC6-208ENST00000438518 ZFYVE16Q7Z3T8 1539 aa27.97■■■□□ 2.07
HDAC6-208ENST00000438518 ADGBQ8N7X0 1667 aa27.97■■■□□ 2.07
HDAC6-208ENST00000438518 AFAP1Q8N556 730 aa27.97■■■□□ 2.07
HDAC6-208ENST00000438518 ATP7AQ04656 1500 aa27.97■■■□□ 2.07
HDAC6-208ENST00000438518 KIDINS220Q9ULH0 1771 aa27.95■■■□□ 2.06
HDAC6-208ENST00000438518 SPAG9O60271 1321 aaKnown RBP27.94■■■□□ 2.06
HDAC6-208ENST00000438518 C9orf84Q5VXU9 1444 aa27.94■■■□□ 2.06
HDAC6-208ENST00000438518 PLXNC1O60486 1568 aa27.94■■■□□ 2.06
HDAC6-208ENST00000438518 ADGRL2O95490 1459 aa27.92■■■□□ 2.06
HDAC6-208ENST00000438518 ARHGEF40Q8TER5 1519 aa27.91■■■□□ 2.06
HDAC6-208ENST00000438518 ROCK1Q13464 1354 aa27.88■■■□□ 2.05
HDAC6-208ENST00000438518 ABCA6Q8N139 1617 aa27.86■■■□□ 2.05
HDAC6-208ENST00000438518 REREQ9P2R6 1566 aa27.86■■■□□ 2.05
HDAC6-208ENST00000438518 DIP2CQ9Y2E4 1556 aa27.86■■■□□ 2.05
HDAC6-208ENST00000438518 ANKRD30AQ9BXX3 1397 aa27.86■■■□□ 2.05
HDAC6-208ENST00000438518 TRIM26Q12899 539 aaPredicted RBP27.85■■■□□ 2.05
HDAC6-208ENST00000438518 PTPRKQ15262 1439 aa27.84■■■□□ 2.05
HDAC6-208ENST00000438518 MYT1LQ9UL68 1186 aa27.83■■■□□ 2.05
HDAC6-208ENST00000438518 NCOA1Q15788 1441 aa27.82■■■□□ 2.04
HDAC6-208ENST00000438518 YEATS2Q9ULM3 1422 aa27.81■■■□□ 2.04
HDAC6-208ENST00000438518 ITGAEP38570 1179 aa27.8■■■□□ 2.04
HDAC6-208ENST00000438518 ATP10AO60312 1499 aa27.8■■■□□ 2.04
HDAC6-208ENST00000438518 DUOX2Q9NRD8 1548 aa27.79■■■□□ 2.04
HDAC6-208ENST00000438518 GCC2Q8IWJ2 1684 aa27.77■■■□□ 2.04
HDAC6-208ENST00000438518 A2MP01023 1474 aa27.76■■■□□ 2.03
HDAC6-208ENST00000438518 KIF15Q9NS87 1388 aa27.75■■■□□ 2.03
HDAC6-208ENST00000438518 EIF2AK4Q9P2K8 1649 aaKnown RBP27.75■■■□□ 2.03
HDAC6-208ENST00000438518 CHIC2Q9UKJ5 165 aa27.75■■■□□ 2.03
HDAC6-208ENST00000438518 ERBINQ96RT1 1412 aa27.73■■■□□ 2.03
HDAC6-208ENST00000438518 BCORL1Q5H9F3 1711 aa27.72■■■□□ 2.03
HDAC6-208ENST00000438518 HFM1A2PYH4 1435 aa27.72■■■□□ 2.03
HDAC6-208ENST00000438518 DHX29Q7Z478 1369 aaKnown RBP27.72■■■□□ 2.03
HDAC6-208ENST00000438518 AGLP35573 1532 aa27.72■■■□□ 2.03
HDAC6-208ENST00000438518 RRP7BPQ9NSQ0 103 aa27.68■■■□□ 2.02
HDAC6-208ENST00000438518 NAIPQ13075 1403 aa27.67■■■□□ 2.02
HDAC6-208ENST00000438518 ANKRD50Q9ULJ7 1429 aa27.66■■■□□ 2.02
HDAC6-208ENST00000438518 SIGLEC1Q9BZZ2 1709 aa27.61■■■□□ 2.01
HDAC6-208ENST00000438518 ACIN1Q9UKV3 1341 aaKnown RBP27.61■■■□□ 2.01
HDAC6-208ENST00000438518 RNF17Q9BXT8 1623 aaKnown RBP27.6■■■□□ 2.01
HDAC6-208ENST00000438518 DEPDC5O75140 1603 aa27.59■■■□□ 2.01
HDAC6-208ENST00000438518 SETD5Q9C0A6 1442 aa27.58■■■□□ 2
HDAC6-208ENST00000438518 FAM135AQ9P2D6 1515 aa27.56■■■□□ 2
HDAC6-208ENST00000438518 UNC13BO14795 1591 aa27.55■■■□□ 2
HDAC6-208ENST00000438518 PRDM15P57071 1507 aaPredicted RBP27.53■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms