RNA–Protein interactions for RNA: ENST00000430682.5

SMPD4-204, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 3

Gene SMPD4, Length 820 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-204ENST00000430682 SCAPERQ9BY12 1400 aa20.27■□□□□ 0.84
SMPD4-204ENST00000430682 ZMYM4Q5VZL5 1548 aa20.27■□□□□ 0.84
SMPD4-204ENST00000430682 ARHGEF40Q8TER5 1519 aa20.27■□□□□ 0.83
SMPD4-204ENST00000430682 PREX2Q70Z35 1606 aa20.26■□□□□ 0.83
SMPD4-204ENST00000430682 YEATS2Q9ULM3 1422 aa20.26■□□□□ 0.83
SMPD4-204ENST00000430682 ADAMTSL3P82987 1691 aa20.26■□□□□ 0.83
SMPD4-204ENST00000430682 ARHGAP5Q13017 1502 aa20.24■□□□□ 0.83
SMPD4-204ENST00000430682 EFCAB2Q5VUJ9 269 aa20.24■□□□□ 0.83
SMPD4-204ENST00000430682 BCORL1Q5H9F3 1711 aa20.24■□□□□ 0.83
SMPD4-204ENST00000430682 POGZQ7Z3K3 1410 aa20.23■□□□□ 0.83
SMPD4-204ENST00000430682 ZFYVE16Q7Z3T8 1539 aa20.21■□□□□ 0.83
SMPD4-204ENST00000430682 ARHGEF12Q9NZN5 1544 aa20.19■□□□□ 0.82
SMPD4-204ENST00000430682 MADDQ8WXG6 1647 aa20.18■□□□□ 0.82
SMPD4-204ENST00000430682 ITSN2Q9NZM3 1697 aa20.16■□□□□ 0.82
SMPD4-204ENST00000430682 AFAP1Q8N556 730 aa20.16■□□□□ 0.82
SMPD4-204ENST00000430682 MAGI2Q86UL8 1455 aa20.16■□□□□ 0.82
SMPD4-204ENST00000430682 KDM5CP41229 1560 aa20.16■□□□□ 0.82
SMPD4-204ENST00000430682 ABCC1P33527 1531 aa20.15■□□□□ 0.82
SMPD4-204ENST00000430682 GPATCH8Q9UKJ3 1502 aaKnown RBP20.14■□□□□ 0.81
SMPD4-204ENST00000430682 ARID4BQ4LE39 1312 aaPredicted RBP20.14■□□□□ 0.81
SMPD4-204ENST00000430682 SAMD9LQ8IVG5 1584 aa20.13■□□□□ 0.81
SMPD4-204ENST00000430682 TRAPPC8Q9Y2L5 1435 aa20.13■□□□□ 0.81
SMPD4-204ENST00000430682 PTPRMP28827 1452 aa20.12■□□□□ 0.81
SMPD4-204ENST00000430682 RIMS1Q86UR5 1692 aaKnown RBP20.12■□□□□ 0.81
SMPD4-204ENST00000430682 ZNF518AQ6AHZ1 1483 aa20.11■□□□□ 0.81
SMPD4-204ENST00000430682 HECW2Q9P2P5 1572 aa20.11■□□□□ 0.81
SMPD4-204ENST00000430682 ABCA6Q8N139 1617 aa20.09■□□□□ 0.81
SMPD4-204ENST00000430682 ATP10AO60312 1499 aa20.09■□□□□ 0.81
SMPD4-204ENST00000430682 MTUS2Q5JR59 1369 aa20.08■□□□□ 0.81
SMPD4-204ENST00000430682 DIP2CQ9Y2E4 1556 aa20.08■□□□□ 0.81
SMPD4-204ENST00000430682 KIDINS220Q9ULH0 1771 aa20.08■□□□□ 0.81
SMPD4-204ENST00000430682 TIAM1Q13009 1591 aa20.08■□□□□ 0.8
SMPD4-204ENST00000430682 EHBP1L1Q8N3D4 1523 aa20.07■□□□□ 0.8
SMPD4-204ENST00000430682 ZNF777Q9ULD5 760 aaPredicted RBP20.06■□□□□ 0.8
SMPD4-204ENST00000430682 SYCP2Q9BX26 1530 aa20.06■□□□□ 0.8
SMPD4-204ENST00000430682 C9orf84Q5VXU9 1444 aa20.05■□□□□ 0.8
SMPD4-204ENST00000430682 FER1L4A9Z1Z3 1794 aa20.05■□□□□ 0.8
SMPD4-204ENST00000430682 MLH3Q9UHC1 1453 aa20.05■□□□□ 0.8
SMPD4-204ENST00000430682 MLECQ14165 292 aa20.04■□□□□ 0.8
SMPD4-204ENST00000430682 VPS8Q8N3P4 1428 aa20.03■□□□□ 0.8
SMPD4-204ENST00000430682 CCNB3Q8WWL7 1395 aa20.03■□□□□ 0.8
SMPD4-204ENST00000430682 HNRNPMP52272 730 aaKnown RBP eCLIP20.02■□□□□ 0.81e-6■■■■□ 22.6
SMPD4-204ENST00000430682 ZNF644Q9H582 1327 aaPredicted RBP20.02■□□□□ 0.79
SMPD4-204ENST00000430682 CFDP1Q9UEE9 299 aaPredicted RBP20■□□□□ 0.79
SMPD4-204ENST00000430682 REREQ9P2R6 1566 aa20■□□□□ 0.79
SMPD4-204ENST00000430682 SUPT6HQ7KZ85 1726 aaKnown RBP19.99■□□□□ 0.79
SMPD4-204ENST00000430682 NCOA2Q15596 1464 aa19.99■□□□□ 0.79
SMPD4-204ENST00000430682 MYT1LQ9UL68 1186 aa19.97■□□□□ 0.79
SMPD4-204ENST00000430682 KIAA1107Q9UPP5 1409 aa19.96■□□□□ 0.79
SMPD4-204ENST00000430682 INO80Q9ULG1 1556 aaPredicted RBP19.95■□□□□ 0.78
SMPD4-204ENST00000430682 LRRC9Q6ZRR7 1453 aa19.94■□□□□ 0.78
SMPD4-204ENST00000430682 KANK4Q5T7N3 995 aaPredicted RBP19.94■□□□□ 0.78
SMPD4-204ENST00000430682 PLPPR3Q6T4P5 718 aa19.94■□□□□ 0.78
SMPD4-204ENST00000430682 MBD5Q9P267 1494 aa19.93■□□□□ 0.78
SMPD4-204ENST00000430682 PLEKHH2Q8IVE3 1493 aa19.92■□□□□ 0.78
SMPD4-204ENST00000430682 AGLP35573 1532 aa19.92■□□□□ 0.78
SMPD4-204ENST00000430682 ATP7AQ04656 1500 aa19.92■□□□□ 0.78
SMPD4-204ENST00000430682 SPAG9O60271 1321 aaKnown RBP19.91■□□□□ 0.78
SMPD4-204ENST00000430682 LMTK3Q96Q04 1460 aa19.91■□□□□ 0.78
SMPD4-204ENST00000430682 CEBPAP49715 358 aaPredicted RBP19.89■□□□□ 0.77
SMPD4-204ENST00000430682 MAP3K1Q13233 1512 aa19.89■□□□□ 0.77
SMPD4-204ENST00000430682 CAMSAP2Q08AD1 1489 aa19.87■□□□□ 0.77
SMPD4-204ENST00000430682 C3P01024 1663 aa19.87■□□□□ 0.77
SMPD4-204ENST00000430682 PLXNC1O60486 1568 aa19.87■□□□□ 0.77
SMPD4-204ENST00000430682 ADGBQ8N7X0 1667 aa19.85■□□□□ 0.77
SMPD4-204ENST00000430682 A2MP01023 1474 aa19.82■□□□□ 0.76
SMPD4-204ENST00000430682 HSPA2P54652 639 aa19.82■□□□□ 0.76
SMPD4-204ENST00000430682 SETD1BQ9UPS6 1966 aaKnown RBP19.82■□□□□ 0.76
SMPD4-204ENST00000430682 PREX1Q8TCU6 1659 aa19.81■□□□□ 0.76
SMPD4-204ENST00000430682 CCDC141Q6ZP82 1450 aa19.79■□□□□ 0.76
SMPD4-204ENST00000430682 ARHGEF5Q12774 1597 aa19.79■□□□□ 0.76
SMPD4-204ENST00000430682 CLTCQ00610 1675 aaKnown RBP19.78■□□□□ 0.76
SMPD4-204ENST00000430682 RTEL1-TNFRSF6BF6WH68 1400 aa19.77■□□□□ 0.76
SMPD4-204ENST00000430682 MYOM3Q5VTT5 1437 aa19.76■□□□□ 0.75
SMPD4-204ENST00000430682 MROH2AA6NES4 1674 aa19.76■□□□□ 0.75
SMPD4-204ENST00000430682 DHX29Q7Z478 1369 aaKnown RBP19.71■□□□□ 0.75
SMPD4-204ENST00000430682 MIA2Q96PC5 1412 aa19.71■□□□□ 0.75
SMPD4-204ENST00000430682 STRCQ7RTU9 1775 aa19.71■□□□□ 0.75
SMPD4-204ENST00000430682 GGT6Q6P531 493 aa19.71■□□□□ 0.75
SMPD4-204ENST00000430682 CNTLNQ9NXG0 1405 aa19.7■□□□□ 0.74
SMPD4-204ENST00000430682 MAST1Q9Y2H9 1570 aa19.7■□□□□ 0.74
SMPD4-204ENST00000430682 RSPH4AQ5TD94 716 aa19.69■□□□□ 0.74
SMPD4-204ENST00000430682 ESF1Q9H501 851 aaKnown RBP19.69■□□□□ 0.74
SMPD4-204ENST00000430682 ZMYM3Q14202 1370 aa19.69■□□□□ 0.74
SMPD4-204ENST00000430682 PTPN23Q9H3S7 1636 aa19.68■□□□□ 0.74
SMPD4-204ENST00000430682 CROCC2H7BZ55 1655 aa19.66■□□□□ 0.74
SMPD4-204ENST00000430682 APLP2Q06481 763 aa19.66■□□□□ 0.74
SMPD4-204ENST00000430682 UHRF1BP1Q6BDS2 1440 aa19.66■□□□□ 0.74
SMPD4-204ENST00000430682 ILDR1Q86SU0 546 aaPredicted RBP19.65■□□□□ 0.74
SMPD4-204ENST00000430682 KIF3BO15066 747 aa19.64■□□□□ 0.73
SMPD4-204ENST00000430682 TSPY4P0CV99 314 aa19.64■□□□□ 0.73
SMPD4-204ENST00000430682 TSPY10P0CW01 314 aa19.64■□□□□ 0.73
SMPD4-204ENST00000430682 ABCC5O15440 1437 aa19.62■□□□□ 0.73
SMPD4-204ENST00000430682 PTPRKQ15262 1439 aa19.62■□□□□ 0.73
SMPD4-204ENST00000430682 FGD6Q6ZV73 1430 aa19.62■□□□□ 0.73
SMPD4-204ENST00000430682 NPATQ14207 1427 aa19.61■□□□□ 0.73
SMPD4-204ENST00000430682 DNMT1P26358 1616 aaKnown RBP19.61■□□□□ 0.73
SMPD4-204ENST00000430682 TCOF1Q13428 1488 aaKnown RBP19.6■□□□□ 0.73
SMPD4-204ENST00000430682 MYO3AQ8NEV4 1616 aa19.59■□□□□ 0.73
SMPD4-204ENST00000430682 RNF17Q9BXT8 1623 aaKnown RBP19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms