RNA–Protein interactions for RNA: ENST00000427570.1

NXF3-202, Transcript of nuclear RNA export factor 3, humanhuman

TSL 1 (best)

Gene NXF3, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NXF3-202ENST00000427570 MYO5CQ9NQX4 1742 aa13.4□□□□□ -0.26
NXF3-202ENST00000427570 CLIP1P30622 1438 aa13.39□□□□□ -0.27
NXF3-202ENST00000427570 TROQ12816 1431 aaPredicted RBP13.39□□□□□ -0.27
NXF3-202ENST00000427570 YEATS2Q9ULM3 1422 aa13.39□□□□□ -0.27
NXF3-202ENST00000427570 RIMS1Q86UR5 1692 aaKnown RBP13.38□□□□□ -0.27
NXF3-202ENST00000427570 KIF14Q15058 1648 aa13.38□□□□□ -0.27
NXF3-202ENST00000427570 ATP10AO60312 1499 aa13.36□□□□□ -0.27
NXF3-202ENST00000427570 PCF11O94913 1555 aaKnown RBP13.36□□□□□ -0.27
NXF3-202ENST00000427570 MLECQ14165 292 aa13.35□□□□□ -0.27
NXF3-202ENST00000427570 ARHGAP5Q13017 1502 aa13.34□□□□□ -0.27
NXF3-202ENST00000427570 LRRIQ1Q96JM4 1722 aa13.34□□□□□ -0.27
NXF3-202ENST00000427570 CASKIN1Q8WXD9 1431 aa13.34□□□□□ -0.27
NXF3-202ENST00000427570 CCDC18Q5T9S5 1454 aa13.34□□□□□ -0.27
NXF3-202ENST00000427570 ZNF518AQ6AHZ1 1483 aa13.34□□□□□ -0.27
NXF3-202ENST00000427570 C9orf84Q5VXU9 1444 aa13.33□□□□□ -0.28
NXF3-202ENST00000427570 LMTK3Q96Q04 1460 aa13.33□□□□□ -0.28
NXF3-202ENST00000427570 SIGLEC1Q9BZZ2 1709 aa13.33□□□□□ -0.28
NXF3-202ENST00000427570 PLPPR3Q6T4P5 718 aa13.32□□□□□ -0.28
NXF3-202ENST00000427570 AFAP1Q8N556 730 aa13.32□□□□□ -0.28
NXF3-202ENST00000427570 FER1L4A9Z1Z3 1794 aa13.31□□□□□ -0.28
NXF3-202ENST00000427570 FBXO41Q8TF61 875 aa13.31□□□□□ -0.28
NXF3-202ENST00000427570 MYT1LQ9UL68 1186 aa13.31□□□□□ -0.28
NXF3-202ENST00000427570 CDC42BPBQ9Y5S2 1711 aa13.3□□□□□ -0.28
NXF3-202ENST00000427570 ARHGEF12Q9NZN5 1544 aa13.29□□□□□ -0.28
NXF3-202ENST00000427570 KDM5CP41229 1560 aa13.29□□□□□ -0.28
NXF3-202ENST00000427570 MLH3Q9UHC1 1453 aa13.28□□□□□ -0.28
NXF3-202ENST00000427570 HSPA2P54652 639 aa13.27□□□□□ -0.29
NXF3-202ENST00000427570 PREX2Q70Z35 1606 aa13.27□□□□□ -0.29
NXF3-202ENST00000427570 FYCO1Q9BQS8 1478 aa13.26□□□□□ -0.29
NXF3-202ENST00000427570 REREQ9P2R6 1566 aa13.25□□□□□ -0.29
NXF3-202ENST00000427570 DIP2CQ9Y2E4 1556 aa13.24□□□□□ -0.29
NXF3-202ENST00000427570 ABCC1P33527 1531 aa13.24□□□□□ -0.29
NXF3-202ENST00000427570 TRAPPC8Q9Y2L5 1435 aa13.23□□□□□ -0.29
NXF3-202ENST00000427570 CDC42BPAQ5VT25 1732 aa13.23□□□□□ -0.29
NXF3-202ENST00000427570 CEBPAP49715 358 aaPredicted RBP13.23□□□□□ -0.29
NXF3-202ENST00000427570 ESF1Q9H501 851 aaKnown RBP13.23□□□□□ -0.29
NXF3-202ENST00000427570 ITSN2Q9NZM3 1697 aa13.23□□□□□ -0.29
NXF3-202ENST00000427570 PREX1Q8TCU6 1659 aa13.22□□□□□ -0.29
NXF3-202ENST00000427570 AGLP35573 1532 aa13.22□□□□□ -0.29
NXF3-202ENST00000427570 ABCA6Q8N139 1617 aa13.21□□□□□ -0.29
NXF3-202ENST00000427570 ZNF777Q9ULD5 760 aaPredicted RBP13.21□□□□□ -0.29
NXF3-202ENST00000427570 SETD1BQ9UPS6 1966 aaKnown RBP13.21□□□□□ -0.29
NXF3-202ENST00000427570 DMRT2Q9Y5R5 561 aa13.2□□□□□ -0.3
NXF3-202ENST00000427570 KIDINS220Q9ULH0 1771 aa13.2□□□□□ -0.3
NXF3-202ENST00000427570 GPATCH8Q9UKJ3 1502 aaKnown RBP13.19□□□□□ -0.3
NXF3-202ENST00000427570 CFDP1Q9UEE9 299 aaPredicted RBP13.18□□□□□ -0.3
NXF3-202ENST00000427570 SPAG9O60271 1321 aaKnown RBP13.17□□□□□ -0.3
NXF3-202ENST00000427570 SAMD9LQ8IVG5 1584 aa13.17□□□□□ -0.3
NXF3-202ENST00000427570 UHRF1BP1Q6BDS2 1440 aa13.17□□□□□ -0.3
NXF3-202ENST00000427570 KIAA1107Q9UPP5 1409 aa13.17□□□□□ -0.3
NXF3-202ENST00000427570 HNRNPMP52272 730 aaKnown RBP eCLIP13.17□□□□□ -0.3
NXF3-202ENST00000427570 CCNB3Q8WWL7 1395 aa13.17□□□□□ -0.3
NXF3-202ENST00000427570 PLEKHH2Q8IVE3 1493 aa13.16□□□□□ -0.3
NXF3-202ENST00000427570 CNTLNQ9NXG0 1405 aa13.16□□□□□ -0.3
NXF3-202ENST00000427570 C3P01024 1663 aa13.16□□□□□ -0.3
NXF3-202ENST00000427570 CERKQ8TCT0 537 aa13.16□□□□□ -0.3
NXF3-202ENST00000427570 MTUS2Q5JR59 1369 aa13.15□□□□□ -0.3
NXF3-202ENST00000427570 SYCP2Q9BX26 1530 aa13.14□□□□□ -0.31
NXF3-202ENST00000427570 ATP7AQ04656 1500 aa13.12□□□□□ -0.31
NXF3-202ENST00000427570 STRCQ7RTU9 1775 aa13.12□□□□□ -0.31
NXF3-202ENST00000427570 SUPT6HQ7KZ85 1726 aaKnown RBP13.1□□□□□ -0.31
NXF3-202ENST00000427570 ZMYM3Q14202 1370 aa13.1□□□□□ -0.31
NXF3-202ENST00000427570 MROH2AA6NES4 1674 aa13.1□□□□□ -0.31
NXF3-202ENST00000427570 PPP6R1Q9UPN7 881 aa13.1□□□□□ -0.31
NXF3-202ENST00000427570 EHBP1L1Q8N3D4 1523 aa13.09□□□□□ -0.31
NXF3-202ENST00000427570 PTPRTO14522 1441 aa13.09□□□□□ -0.31
NXF3-202ENST00000427570 A2MP01023 1474 aa13.09□□□□□ -0.31
NXF3-202ENST00000427570 INO80Q9ULG1 1556 aaPredicted RBP13.08□□□□□ -0.32
NXF3-202ENST00000427570 NPATQ14207 1427 aa13.08□□□□□ -0.32
NXF3-202ENST00000427570 CEP162Q5TB80 1403 aa13.07□□□□□ -0.32
NXF3-202ENST00000427570 RSPH4AQ5TD94 716 aa13.07□□□□□ -0.32
NXF3-202ENST00000427570 ADGBQ8N7X0 1667 aa13.07□□□□□ -0.32
NXF3-202ENST00000427570 ZNF644Q9H582 1327 aaPredicted RBP13.07□□□□□ -0.32
NXF3-202ENST00000427570 PLXNC1O60486 1568 aa13.07□□□□□ -0.32
NXF3-202ENST00000427570 TIAM1Q13009 1591 aa13.07□□□□□ -0.32
NXF3-202ENST00000427570 GGT6Q6P531 493 aa13.06□□□□□ -0.32
NXF3-202ENST00000427570 RTEL1-TNFRSF6BF6WH68 1400 aa13.05□□□□□ -0.32
NXF3-202ENST00000427570 MBD5Q9P267 1494 aa13.05□□□□□ -0.32
NXF3-202ENST00000427570 CLTCQ00610 1675 aaKnown RBP13.05□□□□□ -0.32
NXF3-202ENST00000427570 NCOA1Q15788 1441 aa13.03□□□□□ -0.32
NXF3-202ENST00000427570 DHX29Q7Z478 1369 aaKnown RBP13.02□□□□□ -0.33
NXF3-202ENST00000427570 NCOA2Q15596 1464 aa13.02□□□□□ -0.33
NXF3-202ENST00000427570 PTPRKQ15262 1439 aa13.01□□□□□ -0.33
NXF3-202ENST00000427570 CAMSAP1Q5T5Y3 1602 aa13.01□□□□□ -0.33
NXF3-202ENST00000427570 PKD2Q13563 968 aa13□□□□□ -0.33
NXF3-202ENST00000427570 CCDC141Q6ZP82 1450 aa12.99□□□□□ -0.33
NXF3-202ENST00000427570 TSPY4P0CV99 314 aa12.99□□□□□ -0.33
NXF3-202ENST00000427570 TSPY10P0CW01 314 aa12.99□□□□□ -0.33
NXF3-202ENST00000427570 KIF3BO15066 747 aa12.98□□□□□ -0.33
NXF3-202ENST00000427570 ZNF142P52746 1687 aaPredicted RBP12.98□□□□□ -0.33
NXF3-202ENST00000427570 LTBP4Q8N2S1 1624 aa12.98□□□□□ -0.33
NXF3-202ENST00000427570 MYO3AQ8NEV4 1616 aa12.98□□□□□ -0.33
NXF3-202ENST00000427570 CAMSAP2Q08AD1 1489 aa12.97□□□□□ -0.33
NXF3-202ENST00000427570 PLA2R1Q13018 1463 aa12.97□□□□□ -0.33
NXF3-202ENST00000427570 IQSEC2Q5JU85 1478 aa12.97□□□□□ -0.33
NXF3-202ENST00000427570 NCKAP5LQ9HCH0 1330 aa12.97□□□□□ -0.33
NXF3-202ENST00000427570 CEP170BQ9Y4F5 1589 aaPredicted RBP12.97□□□□□ -0.33
NXF3-202ENST00000427570 ARHGEF5Q12774 1597 aa12.96□□□□□ -0.33
NXF3-202ENST00000427570 FAM135AQ9P2D6 1515 aa12.96□□□□□ -0.33
NXF3-202ENST00000427570 VPS8Q8N3P4 1428 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms