RNA–Protein interactions for RNA: ENST00000427506.5

GPC1-205, Transcript of glypican 1, humanhuman

TSL 3

Gene GPC1, Length 573 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-205ENST00000427506 LOC105371045A0A1W2PR82 267 aa29.54■■■□□ 2.32
GPC1-205ENST00000427506 POGZQ7Z3K3 1410 aa29.53■■■□□ 2.32
GPC1-205ENST00000427506 ARHGEF40Q8TER5 1519 aa29.52■■■□□ 2.32
GPC1-205ENST00000427506 ZMYM4Q5VZL5 1548 aa29.51■■■□□ 2.32
GPC1-205ENST00000427506 ZFYVE16Q7Z3T8 1539 aa29.49■■■□□ 2.31
GPC1-205ENST00000427506 MAGI2Q86UL8 1455 aa29.48■■■□□ 2.31
GPC1-205ENST00000427506 YEATS2Q9ULM3 1422 aa29.46■■■□□ 2.31
GPC1-205ENST00000427506 CDC42BPBQ9Y5S2 1711 aa29.45■■■□□ 2.31
GPC1-205ENST00000427506 PREX2Q70Z35 1606 aa29.45■■■□□ 2.3
GPC1-205ENST00000427506 MTUS2Q5JR59 1369 aa29.44■■■□□ 2.3
GPC1-205ENST00000427506 MYT1LQ9UL68 1186 aa29.43■■■□□ 2.3
GPC1-205ENST00000427506 ZNF518AQ6AHZ1 1483 aa29.42■■■□□ 2.3
GPC1-205ENST00000427506 AFAP1Q8N556 730 aa29.42■■■□□ 2.3
GPC1-205ENST00000427506 ADAMTSL3P82987 1691 aa29.4■■■□□ 2.3
GPC1-205ENST00000427506 BCORL1Q5H9F3 1711 aa29.4■■■□□ 2.3
GPC1-205ENST00000427506 ZNF777Q9ULD5 760 aaPredicted RBP29.39■■■□□ 2.3
GPC1-205ENST00000427506 CDC42BPAQ5VT25 1732 aa29.37■■■□□ 2.29
GPC1-205ENST00000427506 CCNB3Q8WWL7 1395 aa29.35■■■□□ 2.29
GPC1-205ENST00000427506 ATP10AO60312 1499 aa29.35■■■□□ 2.29
GPC1-205ENST00000427506 PTPRMP28827 1452 aa29.34■■■□□ 2.29
GPC1-205ENST00000427506 ABCC1P33527 1531 aa29.34■■■□□ 2.29
GPC1-205ENST00000427506 GPATCH8Q9UKJ3 1502 aaKnown RBP29.34■■■□□ 2.29
GPC1-205ENST00000427506 MADDQ8WXG6 1647 aa29.32■■■□□ 2.28
GPC1-205ENST00000427506 KDM5CP41229 1560 aa29.32■■■□□ 2.28
GPC1-205ENST00000427506 MLECQ14165 292 aa29.32■■■□□ 2.28
GPC1-205ENST00000427506 CFDP1Q9UEE9 299 aaPredicted RBP29.31■■■□□ 2.28
GPC1-205ENST00000427506 ARHGEF12Q9NZN5 1544 aa29.3■■■□□ 2.28
GPC1-205ENST00000427506 C9orf84Q5VXU9 1444 aa29.3■■■□□ 2.28
GPC1-205ENST00000427506 TRAPPC8Q9Y2L5 1435 aa29.3■■■□□ 2.28
GPC1-205ENST00000427506 EHBP1L1Q8N3D4 1523 aa29.3■■■□□ 2.28
GPC1-205ENST00000427506 ITSN2Q9NZM3 1697 aa29.28■■■□□ 2.28
GPC1-205ENST00000427506 HECW2Q9P2P5 1572 aa29.28■■■□□ 2.28
GPC1-205ENST00000427506 SIGLEC1Q9BZZ2 1709 aa29.27■■■□□ 2.28
GPC1-205ENST00000427506 VPS8Q8N3P4 1428 aa29.26■■■□□ 2.27
GPC1-205ENST00000427506 MLH3Q9UHC1 1453 aa29.25■■■□□ 2.27
GPC1-205ENST00000427506 SAMD9LQ8IVG5 1584 aa29.25■■■□□ 2.27
GPC1-205ENST00000427506 RIMS1Q86UR5 1692 aaKnown RBP29.24■■■□□ 2.27
GPC1-205ENST00000427506 HNRNPMP52272 730 aaKnown RBP eCLIP29.23■■■□□ 2.27
GPC1-205ENST00000427506 PLPPR3Q6T4P5 718 aa29.22■■■□□ 2.27
GPC1-205ENST00000427506 SYCP2Q9BX26 1530 aa29.21■■■□□ 2.27
GPC1-205ENST00000427506 PLEKHH2Q8IVE3 1493 aa29.2■■■□□ 2.26
GPC1-205ENST00000427506 DIP2CQ9Y2E4 1556 aa29.2■■■□□ 2.26
GPC1-205ENST00000427506 TIAM1Q13009 1591 aa29.18■■■□□ 2.26
GPC1-205ENST00000427506 ABCA6Q8N139 1617 aa29.17■■■□□ 2.26
GPC1-205ENST00000427506 SPAG9O60271 1321 aaKnown RBP29.17■■■□□ 2.26
GPC1-205ENST00000427506 KIAA1107Q9UPP5 1409 aa29.16■■■□□ 2.26
GPC1-205ENST00000427506 NCOA2Q15596 1464 aa29.13■■■□□ 2.25
GPC1-205ENST00000427506 SUPT6HQ7KZ85 1726 aaKnown RBP29.13■■■□□ 2.25
GPC1-205ENST00000427506 FER1L4A9Z1Z3 1794 aa29.13■■■□□ 2.25
GPC1-205ENST00000427506 KIDINS220Q9ULH0 1771 aa29.12■■■□□ 2.25
GPC1-205ENST00000427506 REREQ9P2R6 1566 aa29.12■■■□□ 2.25
GPC1-205ENST00000427506 ZNF644Q9H582 1327 aaPredicted RBP29.12■■■□□ 2.25
GPC1-205ENST00000427506 LRRC9Q6ZRR7 1453 aa29.08■■■□□ 2.25
GPC1-205ENST00000427506 ESF1Q9H501 851 aaKnown RBP29.05■■■□□ 2.24
GPC1-205ENST00000427506 AGLP35573 1532 aa29.04■■■□□ 2.24
GPC1-205ENST00000427506 ATP7AQ04656 1500 aa29.04■■■□□ 2.24
GPC1-205ENST00000427506 APLP2Q06481 763 aa29.03■■■□□ 2.24
GPC1-205ENST00000427506 MAP3K1Q13233 1512 aa29.03■■■□□ 2.24
GPC1-205ENST00000427506 KANK4Q5T7N3 995 aaPredicted RBP29.02■■■□□ 2.24
GPC1-205ENST00000427506 MBD5Q9P267 1494 aa29■■■□□ 2.23
GPC1-205ENST00000427506 CEBPAP49715 358 aaPredicted RBP29■■■□□ 2.23
GPC1-205ENST00000427506 INO80Q9ULG1 1556 aaPredicted RBP29■■■□□ 2.23
GPC1-205ENST00000427506 CAMSAP2Q08AD1 1489 aa28.98■■■□□ 2.23
GPC1-205ENST00000427506 LMTK3Q96Q04 1460 aa28.98■■■□□ 2.23
GPC1-205ENST00000427506 A2MP01023 1474 aa28.95■■■□□ 2.22
GPC1-205ENST00000427506 RSPH4AQ5TD94 716 aa28.94■■■□□ 2.22
GPC1-205ENST00000427506 CCDC141Q6ZP82 1450 aa28.92■■■□□ 2.22
GPC1-205ENST00000427506 RTEL1-TNFRSF6BF6WH68 1400 aa28.91■■■□□ 2.22
GPC1-205ENST00000427506 HSPA2P54652 639 aa28.9■■■□□ 2.22
GPC1-205ENST00000427506 CNTLNQ9NXG0 1405 aa28.87■■■□□ 2.21
GPC1-205ENST00000427506 ADGBQ8N7X0 1667 aa28.87■■■□□ 2.21
GPC1-205ENST00000427506 TSPY4P0CV99 314 aa28.87■■■□□ 2.21
GPC1-205ENST00000427506 TSPY10P0CW01 314 aa28.87■■■□□ 2.21
GPC1-205ENST00000427506 PLXNC1O60486 1568 aa28.87■■■□□ 2.21
GPC1-205ENST00000427506 GGT6Q6P531 493 aa28.86■■■□□ 2.21
GPC1-205ENST00000427506 MYOM3Q5VTT5 1437 aa28.86■■■□□ 2.21
GPC1-205ENST00000427506 ARHGEF5Q12774 1597 aa28.83■■■□□ 2.21
GPC1-205ENST00000427506 C3P01024 1663 aa28.83■■■□□ 2.21
GPC1-205ENST00000427506 MIA2Q96PC5 1412 aa28.82■■■□□ 2.2
GPC1-205ENST00000427506 PREX1Q8TCU6 1659 aa28.81■■■□□ 2.2
GPC1-205ENST00000427506 DHX29Q7Z478 1369 aaKnown RBP28.81■■■□□ 2.2
GPC1-205ENST00000427506 UHRF1BP1Q6BDS2 1440 aa28.79■■■□□ 2.2
GPC1-205ENST00000427506 ZMYM3Q14202 1370 aa28.76■■■□□ 2.2
GPC1-205ENST00000427506 KIF3BO15066 747 aa28.75■■■□□ 2.19
GPC1-205ENST00000427506 PPP6R1Q9UPN7 881 aa28.74■■■□□ 2.19
GPC1-205ENST00000427506 MROH2AA6NES4 1674 aa28.74■■■□□ 2.19
GPC1-205ENST00000427506 CLTCQ00610 1675 aaKnown RBP28.74■■■□□ 2.19
GPC1-205ENST00000427506 SETD1BQ9UPS6 1966 aaKnown RBP28.71■■■□□ 2.19
GPC1-205ENST00000427506 NPATQ14207 1427 aa28.68■■■□□ 2.18
GPC1-205ENST00000427506 MAST1Q9Y2H9 1570 aa28.67■■■□□ 2.18
GPC1-205ENST00000427506 PTPN23Q9H3S7 1636 aa28.65■■■□□ 2.18
GPC1-205ENST00000427506 ILDR1Q86SU0 546 aaPredicted RBP28.65■■■□□ 2.18
GPC1-205ENST00000427506 FGD6Q6ZV73 1430 aa28.64■■■□□ 2.18
GPC1-205ENST00000427506 WASHC2CQ9Y4E1 1318 aa28.62■■■□□ 2.17
GPC1-205ENST00000427506 PTPRKQ15262 1439 aa28.6■■■□□ 2.17
GPC1-205ENST00000427506 DMRT2Q9Y5R5 561 aa28.58■■■□□ 2.17
GPC1-205ENST00000427506 ABCC5O15440 1437 aa28.58■■■□□ 2.17
GPC1-205ENST00000427506 KDM5DQ9BY66 1539 aa28.58■■■□□ 2.17
GPC1-205ENST00000427506 TCOF1Q13428 1488 aaKnown RBP28.57■■■□□ 2.16
GPC1-205ENST00000427506 DAPK1P53355 1430 aa28.55■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms