RNA–Protein interactions for RNA: ENST00000424804.6

VRK3-203, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,061 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-203ENST00000424804 POGZQ7Z3K3 1410 aa21.38■■□□□ 1.01
VRK3-203ENST00000424804 ZFYVE16Q7Z3T8 1539 aa21.37■■□□□ 1.01
VRK3-203ENST00000424804 TROQ12816 1431 aaPredicted RBP21.37■■□□□ 1.01
VRK3-203ENST00000424804 MYO5CQ9NQX4 1742 aa21.36■■□□□ 1.01
VRK3-203ENST00000424804 EFCAB2Q5VUJ9 269 aa21.34■■□□□ 1.01
VRK3-203ENST00000424804 RIMS1Q86UR5 1692 aaKnown RBP21.34■■□□□ 1.01
VRK3-203ENST00000424804 CDK11AQ9UQ88 783 aaPredicted RBP21.33■■□□□ 1.01
VRK3-203ENST00000424804 CASKIN1Q8WXD9 1431 aa21.3■■□□□ 1
VRK3-203ENST00000424804 LMTK3Q96Q04 1460 aa21.3■■□□□ 1
VRK3-203ENST00000424804 CDC42BPBQ9Y5S2 1711 aa21.29■■□□□ 1
VRK3-203ENST00000424804 PCF11O94913 1555 aaKnown RBP21.29■■□□□ 1
VRK3-203ENST00000424804 ATP10AO60312 1499 aa21.28■■□□□ 1
VRK3-203ENST00000424804 AFAP1Q8N556 730 aa21.26■□□□□ 0.99
VRK3-203ENST00000424804 KDM5CP41229 1560 aa21.26■□□□□ 0.99
VRK3-203ENST00000424804 ARHGAP5Q13017 1502 aa21.24■□□□□ 0.99
VRK3-203ENST00000424804 CLIP1P30622 1438 aa21.24■□□□□ 0.99
VRK3-203ENST00000424804 ARHGEF12Q9NZN5 1544 aa21.24■□□□□ 0.99
VRK3-203ENST00000424804 C9orf84Q5VXU9 1444 aa21.22■□□□□ 0.99
VRK3-203ENST00000424804 CCDC18Q5T9S5 1454 aa21.22■□□□□ 0.99
VRK3-203ENST00000424804 ZNF518AQ6AHZ1 1483 aa21.22■□□□□ 0.99
VRK3-203ENST00000424804 MLECQ14165 292 aa21.22■□□□□ 0.99
VRK3-203ENST00000424804 PREX2Q70Z35 1606 aa21.21■□□□□ 0.99
VRK3-203ENST00000424804 FER1L4A9Z1Z3 1794 aa21.2■□□□□ 0.99
VRK3-203ENST00000424804 TRAPPC8Q9Y2L5 1435 aa21.19■□□□□ 0.98
VRK3-203ENST00000424804 CDC42BPAQ5VT25 1732 aa21.18■□□□□ 0.98
VRK3-203ENST00000424804 FYCO1Q9BQS8 1478 aa21.18■□□□□ 0.98
VRK3-203ENST00000424804 DIP2CQ9Y2E4 1556 aa21.18■□□□□ 0.98
VRK3-203ENST00000424804 HSPA2P54652 639 aa21.17■□□□□ 0.98
VRK3-203ENST00000424804 MLH3Q9UHC1 1453 aa21.17■□□□□ 0.98
VRK3-203ENST00000424804 ABCC1P33527 1531 aa21.17■□□□□ 0.98
VRK3-203ENST00000424804 ABCA6Q8N139 1617 aa21.15■□□□□ 0.98
VRK3-203ENST00000424804 REREQ9P2R6 1566 aa21.14■□□□□ 0.98
VRK3-203ENST00000424804 PLPPR3Q6T4P5 718 aa21.14■□□□□ 0.97
VRK3-203ENST00000424804 ITSN2Q9NZM3 1697 aa21.14■□□□□ 0.97
VRK3-203ENST00000424804 CEBPAP49715 358 aaPredicted RBP21.12■□□□□ 0.97
VRK3-203ENST00000424804 KIDINS220Q9ULH0 1771 aa21.11■□□□□ 0.97
VRK3-203ENST00000424804 GPATCH8Q9UKJ3 1502 aaKnown RBP21.11■□□□□ 0.97
VRK3-203ENST00000424804 FBXO41Q8TF61 875 aa21.09■□□□□ 0.97
VRK3-203ENST00000424804 AGLP35573 1532 aa21.09■□□□□ 0.97
VRK3-203ENST00000424804 SAMD9LQ8IVG5 1584 aa21.08■□□□□ 0.97
VRK3-203ENST00000424804 SETD1BQ9UPS6 1966 aaKnown RBP21.05■□□□□ 0.96
VRK3-203ENST00000424804 PREX1Q8TCU6 1659 aa21.04■□□□□ 0.96
VRK3-203ENST00000424804 HNRNPMP52272 730 aaKnown RBP eCLIP21.02■□□□□ 0.96
VRK3-203ENST00000424804 MYT1LQ9UL68 1186 aa21.02■□□□□ 0.96
VRK3-203ENST00000424804 SYCP2Q9BX26 1530 aa21.01■□□□□ 0.95
VRK3-203ENST00000424804 C3P01024 1663 aa21.01■□□□□ 0.95
VRK3-203ENST00000424804 ZNF777Q9ULD5 760 aaPredicted RBP21■□□□□ 0.95
VRK3-203ENST00000424804 STRCQ7RTU9 1775 aa21■□□□□ 0.95
VRK3-203ENST00000424804 KIAA1107Q9UPP5 1409 aa20.99■□□□□ 0.95
VRK3-203ENST00000424804 CFDP1Q9UEE9 299 aaPredicted RBP20.95■□□□□ 0.94
VRK3-203ENST00000424804 SPAG9O60271 1321 aaKnown RBP20.95■□□□□ 0.94
VRK3-203ENST00000424804 CCNB3Q8WWL7 1395 aa20.95■□□□□ 0.94
VRK3-203ENST00000424804 TIAM1Q13009 1591 aa20.94■□□□□ 0.94
VRK3-203ENST00000424804 ZNF644Q9H582 1327 aaPredicted RBP20.94■□□□□ 0.94
VRK3-203ENST00000424804 MTUS2Q5JR59 1369 aa20.94■□□□□ 0.94
VRK3-203ENST00000424804 CEP162Q5TB80 1403 aa20.94■□□□□ 0.94
VRK3-203ENST00000424804 INO80Q9ULG1 1556 aaPredicted RBP20.93■□□□□ 0.94
VRK3-203ENST00000424804 UHRF1BP1Q6BDS2 1440 aa20.92■□□□□ 0.94
VRK3-203ENST00000424804 PLEKHH2Q8IVE3 1493 aa20.92■□□□□ 0.94
VRK3-203ENST00000424804 MBD5Q9P267 1494 aa20.92■□□□□ 0.94
VRK3-203ENST00000424804 ATP7AQ04656 1500 aa20.92■□□□□ 0.94
VRK3-203ENST00000424804 PLXNC1O60486 1568 aa20.92■□□□□ 0.94
VRK3-203ENST00000424804 SUPT6HQ7KZ85 1726 aaKnown RBP20.9■□□□□ 0.94
VRK3-203ENST00000424804 CERKQ8TCT0 537 aa20.9■□□□□ 0.94
VRK3-203ENST00000424804 CNTLNQ9NXG0 1405 aa20.89■□□□□ 0.94
VRK3-203ENST00000424804 EHBP1L1Q8N3D4 1523 aa20.88■□□□□ 0.93
VRK3-203ENST00000424804 MROH2AA6NES4 1674 aa20.88■□□□□ 0.93
VRK3-203ENST00000424804 A2MP01023 1474 aa20.88■□□□□ 0.93
VRK3-203ENST00000424804 ZMYM3Q14202 1370 aa20.86■□□□□ 0.93
VRK3-203ENST00000424804 ESF1Q9H501 851 aaKnown RBP20.83■□□□□ 0.93
VRK3-203ENST00000424804 NPATQ14207 1427 aa20.82■□□□□ 0.92
VRK3-203ENST00000424804 LOC105371045A0A1W2PR82 267 aa20.82■□□□□ 0.92
VRK3-203ENST00000424804 CLTCQ00610 1675 aaKnown RBP20.82■□□□□ 0.92
VRK3-203ENST00000424804 RTEL1-TNFRSF6BF6WH68 1400 aa20.81■□□□□ 0.92
VRK3-203ENST00000424804 PTPRTO14522 1441 aa20.81■□□□□ 0.92
VRK3-203ENST00000424804 ADGBQ8N7X0 1667 aa20.81■□□□□ 0.92
VRK3-203ENST00000424804 DMRT2Q9Y5R5 561 aa20.81■□□□□ 0.92
VRK3-203ENST00000424804 NCOA2Q15596 1464 aa20.81■□□□□ 0.92
VRK3-203ENST00000424804 NCOA1Q15788 1441 aa20.79■□□□□ 0.92
VRK3-203ENST00000424804 PTPRKQ15262 1439 aa20.78■□□□□ 0.92
VRK3-203ENST00000424804 DHX29Q7Z478 1369 aaKnown RBP20.77■□□□□ 0.92
VRK3-203ENST00000424804 GGT6Q6P531 493 aa20.77■□□□□ 0.92
VRK3-203ENST00000424804 PPP6R1Q9UPN7 881 aa20.75■□□□□ 0.91
VRK3-203ENST00000424804 CAMSAP2Q08AD1 1489 aa20.75■□□□□ 0.91
VRK3-203ENST00000424804 LTBP4Q8N2S1 1624 aa20.75■□□□□ 0.91
VRK3-203ENST00000424804 CAMSAP1Q5T5Y3 1602 aa20.74■□□□□ 0.91
VRK3-203ENST00000424804 VPS8Q8N3P4 1428 aa20.72■□□□□ 0.91
VRK3-203ENST00000424804 CCDC141Q6ZP82 1450 aa20.72■□□□□ 0.91
VRK3-203ENST00000424804 ZNF142P52746 1687 aaPredicted RBP20.71■□□□□ 0.91
VRK3-203ENST00000424804 LRRC9Q6ZRR7 1453 aa20.71■□□□□ 0.91
VRK3-203ENST00000424804 MYO3AQ8NEV4 1616 aa20.71■□□□□ 0.91
VRK3-203ENST00000424804 KANK4Q5T7N3 995 aaPredicted RBP20.69■□□□□ 0.9
VRK3-203ENST00000424804 RSPH4AQ5TD94 716 aa20.69■□□□□ 0.9
VRK3-203ENST00000424804 NCKAP5LQ9HCH0 1330 aa20.69■□□□□ 0.9
VRK3-203ENST00000424804 ARHGEF5Q12774 1597 aa20.68■□□□□ 0.9
VRK3-203ENST00000424804 CEP170BQ9Y4F5 1589 aaPredicted RBP20.67■□□□□ 0.9
VRK3-203ENST00000424804 KIF3BO15066 747 aa20.66■□□□□ 0.9
VRK3-203ENST00000424804 TCOF1Q13428 1488 aaKnown RBP20.66■□□□□ 0.9
VRK3-203ENST00000424804 MAP3K1Q13233 1512 aa20.65■□□□□ 0.9
VRK3-203ENST00000424804 PLA2R1Q13018 1463 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms