RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 MYOM3Q5VTT5 1437 aa13.49□□□□□ -0.25
USP54-205ENST00000424265 ANKRD30AQ9BXX3 1397 aa13.49□□□□□ -0.25
USP54-205ENST00000424265 PLEKHH2Q8IVE3 1493 aa13.48□□□□□ -0.25
USP54-205ENST00000424265 MIA2Q96PC5 1412 aa13.46□□□□□ -0.26
USP54-205ENST00000424265 PCF11O94913 1555 aaKnown RBP13.46□□□□□ -0.26
USP54-205ENST00000424265 TRHP20396 242 aaPredicted RBP13.45□□□□□ -0.26
USP54-205ENST00000424265 FKBP8Q14318 412 aa13.45□□□□□ -0.26
USP54-205ENST00000424265 NCOA2Q15596 1464 aa13.45□□□□□ -0.26
USP54-205ENST00000424265 A0A0U1RQG5 324 aaPredicted RBP13.45□□□□□ -0.26
USP54-205ENST00000424265 KANK1Q14678 1352 aa13.45□□□□□ -0.26
USP54-205ENST00000424265 RRP7BPQ9NSQ0 103 aa13.44□□□□□ -0.26
USP54-205ENST00000424265 CEP170Q5SW79 1584 aa13.44□□□□□ -0.26
USP54-205ENST00000424265 RAPGEF6Q8TEU7 1601 aa13.43□□□□□ -0.26
USP54-205ENST00000424265 VSIG10Q8N0Z9 540 aa13.43□□□□□ -0.26
USP54-205ENST00000424265 FGD6Q6ZV73 1430 aa13.43□□□□□ -0.26
USP54-205ENST00000424265 SUPT6HQ7KZ85 1726 aaKnown RBP13.43□□□□□ -0.26
USP54-205ENST00000424265 SETD5Q9C0A6 1442 aa13.43□□□□□ -0.26
USP54-205ENST00000424265 PDE4CQ08493 712 aa13.42□□□□□ -0.26
USP54-205ENST00000424265 SAMD9Q5K651 1589 aa13.42□□□□□ -0.26
USP54-205ENST00000424265 PLB1Q6P1J6 1458 aa13.4□□□□□ -0.26
USP54-205ENST00000424265 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.4□□□□□ -0.26
USP54-205ENST00000424265 TONSLQ96HA7 1378 aa13.4□□□□□ -0.26
USP54-205ENST00000424265 SPAG9O60271 1321 aaKnown RBP13.4□□□□□ -0.26
USP54-205ENST00000424265 SLC4A1APQ9BWU0 796 aaKnown RBP13.39□□□□□ -0.27
USP54-205ENST00000424265 KIF14Q15058 1648 aa13.39□□□□□ -0.27
USP54-205ENST00000424265 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.38□□□□□ -0.27
USP54-205ENST00000424265 DISP1Q96F81 1524 aa13.38□□□□□ -0.27
USP54-205ENST00000424265 CHD1O14646 1710 aa13.37□□□□□ -0.27
USP54-205ENST00000424265 RRBP1Q9P2E9 1410 aaKnown RBP13.36□□□□□ -0.27
USP54-205ENST00000424265 ARHGAP5Q13017 1502 aa13.36□□□□□ -0.27
USP54-205ENST00000424265 FAM69CQ0P6D2 419 aa13.36□□□□□ -0.27
USP54-205ENST00000424265 ABCC2Q92887 1545 aa13.35□□□□□ -0.27
USP54-205ENST00000424265 CDK13Q14004 1512 aaKnown RBP13.35□□□□□ -0.27
USP54-205ENST00000424265 STAG3Q9UJ98 1225 aa13.34□□□□□ -0.27
USP54-205ENST00000424265 PHLDB1Q86UU1 1377 aa13.33□□□□□ -0.27
USP54-205ENST00000424265 IL27Q8NEV9 243 aa13.33□□□□□ -0.28
USP54-205ENST00000424265 TIMELESSQ9UNS1 1208 aa13.33□□□□□ -0.28
USP54-205ENST00000424265 NUP153P49790 1475 aaKnown RBP13.32□□□□□ -0.28
USP54-205ENST00000424265 HNRNPMP52272 730 aaKnown RBP eCLIP13.32□□□□□ -0.28
USP54-205ENST00000424265 ARID4BQ4LE39 1312 aaPredicted RBP13.32□□□□□ -0.28
USP54-205ENST00000424265 FANCIQ9NVI1 1328 aa13.31□□□□□ -0.28
USP54-205ENST00000424265 UHRF1BP1LA0JNW5 1464 aa13.31□□□□□ -0.28
USP54-205ENST00000424265 ATP10BO94823 1461 aa13.3□□□□□ -0.28
USP54-205ENST00000424265 RSPH6AQ9H0K4 717 aa13.3□□□□□ -0.28
USP54-205ENST00000424265 PDIA4P13667 645 aaKnown RBP13.3□□□□□ -0.28
USP54-205ENST00000424265 CFAP43Q8NDM7 1665 aa13.28□□□□□ -0.28
USP54-205ENST00000424265 NOP58Q9Y2X3 529 aaKnown RBP13.27□□□□□ -0.28
USP54-205ENST00000424265 WDR7Q9Y4E6 1490 aa13.27□□□□□ -0.28
USP54-205ENST00000424265 RAB3GAP2Q9H2M9 1393 aa13.27□□□□□ -0.29
USP54-205ENST00000424265 MSH5O43196 834 aa13.26□□□□□ -0.29
USP54-205ENST00000424265 ZMYND15Q9H091 742 aa13.26□□□□□ -0.29
USP54-205ENST00000424265 CD109Q6YHK3 1445 aa13.26□□□□□ -0.29
USP54-205ENST00000424265 ITSN2Q9NZM3 1697 aa13.25□□□□□ -0.29
USP54-205ENST00000424265 CHGAP10645 457 aaKnown RBP13.24□□□□□ -0.29
USP54-205ENST00000424265 TEX14Q8IWB6 1497 aa13.24□□□□□ -0.29
USP54-205ENST00000424265 CLASP1Q7Z460 1538 aa13.24□□□□□ -0.29
USP54-205ENST00000424265 ZNF326Q5BKZ1 582 aaKnown RBP13.24□□□□□ -0.29
USP54-205ENST00000424265 ASXL2Q76L83 1435 aa13.24□□□□□ -0.29
USP54-205ENST00000424265 NUP155O75694 1391 aa13.24□□□□□ -0.29
USP54-205ENST00000424265 ABCA8O94911 1581 aa13.23□□□□□ -0.29
USP54-205ENST00000424265 ROCK1Q13464 1354 aa13.23□□□□□ -0.29
USP54-205ENST00000424265 CCDC141Q6ZP82 1450 aa13.22□□□□□ -0.29
USP54-205ENST00000424265 HDGFP51858 240 aaKnown RBP13.22□□□□□ -0.29
USP54-205ENST00000424265 KIF15Q9NS87 1388 aa13.22□□□□□ -0.29
USP54-205ENST00000424265 ANP32AP39687 249 aaKnown RBP13.22□□□□□ -0.29
USP54-205ENST00000424265 ARHGEF11O15085 1522 aa13.21□□□□□ -0.29
USP54-205ENST00000424265 KIF3BO15066 747 aa13.21□□□□□ -0.29
USP54-205ENST00000424265 C9orf84Q5VXU9 1444 aa13.2□□□□□ -0.3
USP54-205ENST00000424265 PLCH2O75038 1416 aa13.2□□□□□ -0.3
USP54-205ENST00000424265 PTPN23Q9H3S7 1636 aa13.2□□□□□ -0.3
USP54-205ENST00000424265 DAPK1P53355 1430 aa13.19□□□□□ -0.3
USP54-205ENST00000424265 CAMSAP2Q08AD1 1489 aa13.19□□□□□ -0.3
USP54-205ENST00000424265 SCAPERQ9BY12 1400 aa13.19□□□□□ -0.3
USP54-205ENST00000424265 ANKRD50Q9ULJ7 1429 aa13.18□□□□□ -0.3
USP54-205ENST00000424265 MPHOSPH9Q99550 1183 aa13.18□□□□□ -0.3
USP54-205ENST00000424265 GGT6Q6P531 493 aa13.18□□□□□ -0.3
USP54-205ENST00000424265 KDM5BQ9UGL1 1544 aa13.18□□□□□ -0.3
USP54-205ENST00000424265 KIAA1107Q9UPP5 1409 aa13.17□□□□□ -0.3
USP54-205ENST00000424265 GPATCH8Q9UKJ3 1502 aaKnown RBP13.17□□□□□ -0.3
USP54-205ENST00000424265 ADGRL1O94910 1474 aa13.17□□□□□ -0.3
USP54-205ENST00000424265 PKD2Q13563 968 aa13.16□□□□□ -0.3
USP54-205ENST00000424265 FANCAO15360 1455 aa13.16□□□□□ -0.3
USP54-205ENST00000424265 HFM1A2PYH4 1435 aa13.16□□□□□ -0.3
USP54-205ENST00000424265 ZNF644Q9H582 1327 aaPredicted RBP13.16□□□□□ -0.3
USP54-205ENST00000424265 AKNAQ7Z591 1439 aa13.16□□□□□ -0.3
USP54-205ENST00000424265 NEFMP07197 916 aa13.16□□□□□ -0.3
USP54-205ENST00000424265 ZBTB47Q9UFB7 747 aaPredicted RBP13.16□□□□□ -0.3
USP54-205ENST00000424265 WASHC2CQ9Y4E1 1318 aa13.15□□□□□ -0.3
USP54-205ENST00000424265 POLR3GLQ9BT43 218 aa13.15□□□□□ -0.3
USP54-205ENST00000424265 SHROOM2Q13796 1616 aa13.15□□□□□ -0.3
USP54-205ENST00000424265 DENND4BO75064 1496 aaPredicted RBP13.14□□□□□ -0.31
USP54-205ENST00000424265 PPP1R15AO75807 674 aaPredicted RBP13.14□□□□□ -0.31
USP54-205ENST00000424265 TCOF1Q13428 1488 aaKnown RBP13.13□□□□□ -0.31
USP54-205ENST00000424265 POGZQ7Z3K3 1410 aa13.12□□□□□ -0.31
USP54-205ENST00000424265 STAC3Q96MF2 364 aa13.11□□□□□ -0.31
USP54-205ENST00000424265 HSP90AA2PQ14568 343 aaPredicted RBP13.11□□□□□ -0.31
USP54-205ENST00000424265 CFAP74Q9C0B2 1584 aa13.11□□□□□ -0.31
USP54-205ENST00000424265 RBM10P98175 930 aaKnown RBP13.1□□□□□ -0.31
USP54-205ENST00000424265 FGD1P98174 961 aa13.1□□□□□ -0.31
USP54-205ENST00000424265 AFAP1Q8N556 730 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms