RNA–Protein interactions for RNA: ENST00000424143.5

C9orf3-204, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 1,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-204ENST00000424143 CDK11AQ9UQ88 783 aaPredicted RBP21■□□□□ 0.95
C9orf3-204ENST00000424143 PPP4R2Q9NY27 417 aa21■□□□□ 0.95
C9orf3-204ENST00000424143 RRP7BPQ9NSQ0 103 aa20.99■□□□□ 0.95
C9orf3-204ENST00000424143 ZBED9Q6R2W3 1325 aa20.98■□□□□ 0.95
C9orf3-204ENST00000424143 PRKRIP1Q9H875 184 aaPredicted RBP20.98■□□□□ 0.95
C9orf3-204ENST00000424143 DAPK1P53355 1430 aa20.98■□□□□ 0.95
C9orf3-204ENST00000424143 L3MBTL2Q969R5 705 aa20.97■□□□□ 0.95
C9orf3-204ENST00000424143 ABCC5O15440 1437 aa20.93■□□□□ 0.94
C9orf3-204ENST00000424143 ARID4BQ4LE39 1312 aaPredicted RBP20.93■□□□□ 0.94
C9orf3-204ENST00000424143 CDK13Q14004 1512 aaKnown RBP20.91■□□□□ 0.94
C9orf3-204ENST00000424143 MYT1LQ9UL68 1186 aa20.89■□□□□ 0.94
C9orf3-204ENST00000424143 KIAA0586Q9BVV6 1533 aa20.89■□□□□ 0.93
C9orf3-204ENST00000424143 MBD5Q9P267 1494 aa20.88■□□□□ 0.93
C9orf3-204ENST00000424143 CHIC2Q9UKJ5 165 aa20.88■□□□□ 0.93
C9orf3-204ENST00000424143 KIAA0556O60303 1618 aa20.86■□□□□ 0.93
C9orf3-204ENST00000424143 ADGRL2O95490 1459 aa20.86■□□□□ 0.93
C9orf3-204ENST00000424143 ADGBQ8N7X0 1667 aa20.86■□□□□ 0.93
C9orf3-204ENST00000424143 C11orf95C9JLR9 678 aaPredicted RBP20.86■□□□□ 0.93
C9orf3-204ENST00000424143 MSH5O43196 834 aa20.85■□□□□ 0.93
C9orf3-204ENST00000424143 NBPF8Q3BBV2 869 aa20.84■□□□□ 0.93
C9orf3-204ENST00000424143 SMG6Q86US8 1419 aaKnown RBP20.84■□□□□ 0.93
C9orf3-204ENST00000424143 RAPGEF6Q8TEU7 1601 aa20.83■□□□□ 0.93
C9orf3-204ENST00000424143 ITSN2Q9NZM3 1697 aa20.83■□□□□ 0.93
C9orf3-204ENST00000424143 KIF7Q2M1P5 1343 aa20.83■□□□□ 0.93
C9orf3-204ENST00000424143 PZPP20742 1482 aa20.83■□□□□ 0.92
C9orf3-204ENST00000424143 DISP1Q96F81 1524 aa20.83■□□□□ 0.92
C9orf3-204ENST00000424143 NUP153P49790 1475 aaKnown RBP20.82■□□□□ 0.92
C9orf3-204ENST00000424143 MRC2Q9UBG0 1479 aa20.82■□□□□ 0.92
C9orf3-204ENST00000424143 ADCY10Q96PN6 1610 aa20.82■□□□□ 0.92
C9orf3-204ENST00000424143 MRS2Q9HD23 443 aa20.82■□□□□ 0.92
C9orf3-204ENST00000424143 RNF123Q5XPI4 1314 aa20.81■□□□□ 0.92
C9orf3-204ENST00000424143 IFT140Q96RY7 1462 aa20.8■□□□□ 0.92
C9orf3-204ENST00000424143 UHRF1BP1Q6BDS2 1440 aa20.79■□□□□ 0.92
C9orf3-204ENST00000424143 CCDC184Q52MB2 194 aa20.79■□□□□ 0.92
C9orf3-204ENST00000424143 ROCK2O75116 1388 aaKnown RBP20.79■□□□□ 0.92
C9orf3-204ENST00000424143 TROQ12816 1431 aaPredicted RBP20.78■□□□□ 0.92
C9orf3-204ENST00000424143 KIAA1107Q9UPP5 1409 aa20.78■□□□□ 0.92
C9orf3-204ENST00000424143 DHX29Q7Z478 1369 aaKnown RBP20.78■□□□□ 0.92
C9orf3-204ENST00000424143 KIF14Q15058 1648 aa20.78■□□□□ 0.92
C9orf3-204ENST00000424143 CROCC2H7BZ55 1655 aa20.77■□□□□ 0.91
C9orf3-204ENST00000424143 SLC4A1APQ9BWU0 796 aaKnown RBP20.76■□□□□ 0.91
C9orf3-204ENST00000424143 KTN1Q86UP2 1357 aaKnown RBP20.74■□□□□ 0.91
C9orf3-204ENST00000424143 ARHGEF12Q9NZN5 1544 aa20.74■□□□□ 0.91
C9orf3-204ENST00000424143 CAMSAP2Q08AD1 1489 aa20.73■□□□□ 0.91
C9orf3-204ENST00000424143 KDM5CP41229 1560 aa20.73■□□□□ 0.91
C9orf3-204ENST00000424143 BCL11AQ9H165 835 aa20.72■□□□□ 0.91
C9orf3-204ENST00000424143 KDM5DQ9BY66 1539 aa20.71■□□□□ 0.91
C9orf3-204ENST00000424143 SHANK2Q9UPX8 1470 aa20.71■□□□□ 0.91
C9orf3-204ENST00000424143 GPATCH8Q9UKJ3 1502 aaKnown RBP20.7■□□□□ 0.9
C9orf3-204ENST00000424143 RALGAPBQ86X10 1494 aa20.7■□□□□ 0.9
C9orf3-204ENST00000424143 FAM9BQ8IZU0 186 aa20.7■□□□□ 0.9
C9orf3-204ENST00000424143 IRX6P78412 446 aaPredicted RBP20.68■□□□□ 0.9
C9orf3-204ENST00000424143 FOXD1Q16676 465 aa20.68■□□□□ 0.9
C9orf3-204ENST00000424143 NUDCQ9Y266 331 aa20.68■□□□□ 0.9
C9orf3-204ENST00000424143 BCORL1Q5H9F3 1711 aa20.68■□□□□ 0.9
C9orf3-204ENST00000424143 GRIN2AQ12879 1464 aa20.68■□□□□ 0.9
C9orf3-204ENST00000424143 USP47Q96K76 1375 aa20.68■□□□□ 0.9
C9orf3-204ENST00000424143 ANKRD30AQ9BXX3 1397 aa20.67■□□□□ 0.9
C9orf3-204ENST00000424143 ERICH6Q7L0X2 663 aa20.67■□□□□ 0.9
C9orf3-204ENST00000424143 ZNF644Q9H582 1327 aaPredicted RBP20.63■□□□□ 0.89
C9orf3-204ENST00000424143 MAGI1Q96QZ7 1491 aaPredicted RBP20.62■□□□□ 0.89
C9orf3-204ENST00000424143 CFDP1Q9UEE9 299 aaPredicted RBP20.61■□□□□ 0.89
C9orf3-204ENST00000424143 LRPPRCP42704 1394 aaKnown RBP20.6■□□□□ 0.89
C9orf3-204ENST00000424143 PRG4Q92954 1404 aaPredicted RBP20.6■□□□□ 0.89
C9orf3-204ENST00000424143 PNISRQ8TF01 805 aaKnown RBP20.6■□□□□ 0.89
C9orf3-204ENST00000424143 PTPRGP23470 1445 aa20.59■□□□□ 0.89
C9orf3-204ENST00000424143 ANKRD50Q9ULJ7 1429 aa20.59■□□□□ 0.89
C9orf3-204ENST00000424143 BRD4O60885 1362 aaPredicted RBP20.59■□□□□ 0.89
C9orf3-204ENST00000424143 INSRP06213 1382 aa20.59■□□□□ 0.89
C9orf3-204ENST00000424143 KIF15Q9NS87 1388 aa20.59■□□□□ 0.89
C9orf3-204ENST00000424143 B4GALNT3Q6L9W6 998 aa20.58■□□□□ 0.89
C9orf3-204ENST00000424143 CEP170Q5SW79 1584 aa20.57■□□□□ 0.88
C9orf3-204ENST00000424143 ZNF608Q9ULD9 1512 aaPredicted RBP20.57■□□□□ 0.88
C9orf3-204ENST00000424143 RALBP1Q15311 655 aa20.56■□□□□ 0.88
C9orf3-204ENST00000424143 E9PCH4 1651 aa20.56■□□□□ 0.88
C9orf3-204ENST00000424143 ARHGEF5Q12774 1597 aa20.55■□□□□ 0.88
C9orf3-204ENST00000424143 ZMYM4Q5VZL5 1548 aa20.55■□□□□ 0.88
C9orf3-204ENST00000424143 PKD2Q13563 968 aa20.55■□□□□ 0.88
C9orf3-204ENST00000424143 ABCC10Q5T3U5 1492 aa20.54■□□□□ 0.88
C9orf3-204ENST00000424143 CARMIL2Q6F5E8 1435 aa20.54■□□□□ 0.88
C9orf3-204ENST00000424143 EIF4G3O43432 1585 aaKnown RBP20.53■□□□□ 0.88
C9orf3-204ENST00000424143 CDC42BPAQ5VT25 1732 aa20.53■□□□□ 0.88
C9orf3-204ENST00000424143 SYNJ2O15056 1496 aa20.52■□□□□ 0.87
C9orf3-204ENST00000424143 ABCA8O94911 1581 aa20.51■□□□□ 0.87
C9orf3-204ENST00000424143 NUP160Q12769 1436 aa20.5■□□□□ 0.87
C9orf3-204ENST00000424143 NOP58Q9Y2X3 529 aaKnown RBP20.49■□□□□ 0.87
C9orf3-204ENST00000424143 C9orf84Q5VXU9 1444 aa20.49■□□□□ 0.87
C9orf3-204ENST00000424143 MYBBP1AQ9BQG0 1328 aaKnown RBP20.49■□□□□ 0.87
C9orf3-204ENST00000424143 PDE3BQ13370 1112 aa20.49■□□□□ 0.87
C9orf3-204ENST00000424143 LAMC1P11047 1609 aa20.48■□□□□ 0.87
C9orf3-204ENST00000424143 PLB1Q6P1J6 1458 aa20.48■□□□□ 0.87
C9orf3-204ENST00000424143 TMC1Q8TDI8 760 aa20.47■□□□□ 0.87
C9orf3-204ENST00000424143 WASHC2CQ9Y4E1 1318 aa20.47■□□□□ 0.87
C9orf3-204ENST00000424143 CCDC136Q96JN2 1154 aa20.46■□□□□ 0.87
C9orf3-204ENST00000424143 DNAJC5BQ9UF47 199 aa20.45■□□□□ 0.87
C9orf3-204ENST00000424143 NUP155O75694 1391 aa20.45■□□□□ 0.86
C9orf3-204ENST00000424143 ARID3CA6NKF2 412 aa20.44■□□□□ 0.86
C9orf3-204ENST00000424143 RSPH4AQ5TD94 716 aa20.44■□□□□ 0.86
C9orf3-204ENST00000424143 CARD11Q9BXL7 1154 aa20.44■□□□□ 0.86
C9orf3-204ENST00000424143 GPRASP1Q5JY77 1395 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms