RNA–Protein interactions for RNA: ENST00000423567.1

USP49-204, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 2

Gene USP49, Length 752 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-204ENST00000423567 PLCH2O75038 1416 aa17.4■□□□□ 0.38
USP49-204ENST00000423567 LRRIQ1Q96JM4 1722 aa17.4■□□□□ 0.38
USP49-204ENST00000423567 AKNAQ7Z591 1439 aa17.39■□□□□ 0.38
USP49-204ENST00000423567 CFAP74Q9C0B2 1584 aa17.39■□□□□ 0.37
USP49-204ENST00000423567 EFCAB2Q5VUJ9 269 aa17.38■□□□□ 0.37
USP49-204ENST00000423567 RAPGEF3O95398 923 aa17.37■□□□□ 0.37
USP49-204ENST00000423567 MTUS2Q5JR59 1369 aa17.36■□□□□ 0.37
USP49-204ENST00000423567 DENND4BO75064 1496 aaPredicted RBP17.36■□□□□ 0.37
USP49-204ENST00000423567 HOXD11P31277 338 aaPredicted RBP17.35■□□□□ 0.37
USP49-204ENST00000423567 VPS8Q8N3P4 1428 aa17.34■□□□□ 0.37
USP49-204ENST00000423567 MYO5CQ9NQX4 1742 aa17.33■□□□□ 0.37
USP49-204ENST00000423567 ARHGAP5Q13017 1502 aa17.33■□□□□ 0.37
USP49-204ENST00000423567 ADGRL1O94910 1474 aa17.33■□□□□ 0.37
USP49-204ENST00000423567 NCBP3Q53F19 620 aaKnown RBP17.33■□□□□ 0.36
USP49-204ENST00000423567 SCAPERQ9BY12 1400 aa17.31■□□□□ 0.36
USP49-204ENST00000423567 RNF216Q9NWF9 866 aaPredicted RBP17.29■□□□□ 0.36
USP49-204ENST00000423567 EHBP1L1Q8N3D4 1523 aa17.27■□□□□ 0.36
USP49-204ENST00000423567 CCNB3Q8WWL7 1395 aa17.27■□□□□ 0.35
USP49-204ENST00000423567 POGZQ7Z3K3 1410 aa17.26■□□□□ 0.35
USP49-204ENST00000423567 FRMPD1Q5SYB0 1578 aa17.26■□□□□ 0.35
USP49-204ENST00000423567 KDM4FA0A1W2PPD8 638 aa17.25■□□□□ 0.35
USP49-204ENST00000423567 APLP2Q06481 763 aa17.25■□□□□ 0.35
USP49-204ENST00000423567 PREX2Q70Z35 1606 aa17.25■□□□□ 0.35
USP49-204ENST00000423567 ZNF777Q9ULD5 760 aaPredicted RBP17.24■□□□□ 0.35
USP49-204ENST00000423567 CFDP1Q9UEE9 299 aaPredicted RBP17.23■□□□□ 0.35
USP49-204ENST00000423567 RICTORQ6R327 1708 aa17.23■□□□□ 0.35
USP49-204ENST00000423567 MAGI2Q86UL8 1455 aa17.23■□□□□ 0.35
USP49-204ENST00000423567 ZMYM4Q5VZL5 1548 aa17.22■□□□□ 0.35
USP49-204ENST00000423567 GPATCH8Q9UKJ3 1502 aaKnown RBP17.22■□□□□ 0.35
USP49-204ENST00000423567 MYT1LQ9UL68 1186 aa17.22■□□□□ 0.35
USP49-204ENST00000423567 ZNF518AQ6AHZ1 1483 aa17.22■□□□□ 0.35
USP49-204ENST00000423567 TIAM1Q13009 1591 aa17.22■□□□□ 0.35
USP49-204ENST00000423567 ARID4BQ4LE39 1312 aaPredicted RBP17.21■□□□□ 0.35
USP49-204ENST00000423567 CDC42BPBQ9Y5S2 1711 aa17.21■□□□□ 0.35
USP49-204ENST00000423567 ZFYVE16Q7Z3T8 1539 aa17.2■□□□□ 0.34
USP49-204ENST00000423567 ARHGEF40Q8TER5 1519 aa17.2■□□□□ 0.34
USP49-204ENST00000423567 CDC42BPAQ5VT25 1732 aa17.19■□□□□ 0.34
USP49-204ENST00000423567 AFAP1Q8N556 730 aa17.19■□□□□ 0.34
USP49-204ENST00000423567 ABCC1P33527 1531 aa17.18■□□□□ 0.34
USP49-204ENST00000423567 MAP3K1Q13233 1512 aa17.18■□□□□ 0.34
USP49-204ENST00000423567 NCOA2Q15596 1464 aa17.17■□□□□ 0.34
USP49-204ENST00000423567 LRRC9Q6ZRR7 1453 aa17.17■□□□□ 0.34
USP49-204ENST00000423567 PLEKHH2Q8IVE3 1493 aa17.17■□□□□ 0.34
USP49-204ENST00000423567 SUPT6HQ7KZ85 1726 aaKnown RBP17.16■□□□□ 0.34
USP49-204ENST00000423567 YEATS2Q9ULM3 1422 aa17.16■□□□□ 0.34
USP49-204ENST00000423567 KIAA1107Q9UPP5 1409 aa17.14■□□□□ 0.33
USP49-204ENST00000423567 TRAPPC8Q9Y2L5 1435 aa17.14■□□□□ 0.33
USP49-204ENST00000423567 ARHGEF12Q9NZN5 1544 aa17.14■□□□□ 0.33
USP49-204ENST00000423567 KDM5CP41229 1560 aa17.14■□□□□ 0.33
USP49-204ENST00000423567 ITSN2Q9NZM3 1697 aa17.13■□□□□ 0.33
USP49-204ENST00000423567 HNRNPMP52272 730 aaKnown RBP eCLIP17.13■□□□□ 0.33
USP49-204ENST00000423567 SAMD9LQ8IVG5 1584 aa17.13■□□□□ 0.33
USP49-204ENST00000423567 ATP10AO60312 1499 aa17.12■□□□□ 0.33
USP49-204ENST00000423567 KANK4Q5T7N3 995 aaPredicted RBP17.12■□□□□ 0.33
USP49-204ENST00000423567 C9orf84Q5VXU9 1444 aa17.12■□□□□ 0.33
USP49-204ENST00000423567 SYCP2Q9BX26 1530 aa17.11■□□□□ 0.33
USP49-204ENST00000423567 HECW2Q9P2P5 1572 aa17.11■□□□□ 0.33
USP49-204ENST00000423567 MLH3Q9UHC1 1453 aa17.11■□□□□ 0.33
USP49-204ENST00000423567 NPM3O75607 178 aaKnown RBP17.1■□□□□ 0.33
USP49-204ENST00000423567 SPAG9O60271 1321 aaKnown RBP17.09■□□□□ 0.33
USP49-204ENST00000423567 ZNF644Q9H582 1327 aaPredicted RBP17.08■□□□□ 0.32
USP49-204ENST00000423567 DCAF8L1A6NGE4 600 aa17.08■□□□□ 0.32
USP49-204ENST00000423567 MLECQ14165 292 aa17.06■□□□□ 0.32
USP49-204ENST00000423567 BCORL1Q5H9F3 1711 aa17.05■□□□□ 0.32
USP49-204ENST00000423567 KCNA4P22459 653 aa17.05■□□□□ 0.32
USP49-204ENST00000423567 RSPH4AQ5TD94 716 aa17.05■□□□□ 0.32
USP49-204ENST00000423567 DIP2CQ9Y2E4 1556 aa17.04■□□□□ 0.32
USP49-204ENST00000423567 CAMSAP2Q08AD1 1489 aa17.04■□□□□ 0.32
USP49-204ENST00000423567 ADAMTSL3P82987 1691 aa17.04■□□□□ 0.32
USP49-204ENST00000423567 MYOM3Q5VTT5 1437 aa17.03■□□□□ 0.32
USP49-204ENST00000423567 MBD5Q9P267 1494 aa17.02■□□□□ 0.32
USP49-204ENST00000423567 ABCA6Q8N139 1617 aa17.02■□□□□ 0.31
USP49-204ENST00000423567 MIA2Q96PC5 1412 aa17.01■□□□□ 0.31
USP49-204ENST00000423567 REREQ9P2R6 1566 aa17.01■□□□□ 0.31
USP49-204ENST00000423567 ATP7AQ04656 1500 aa17.01■□□□□ 0.31
USP49-204ENST00000423567 PTPRMP28827 1452 aa17■□□□□ 0.31
USP49-204ENST00000423567 CCDC141Q6ZP82 1450 aa17■□□□□ 0.31
USP49-204ENST00000423567 KIDINS220Q9ULH0 1771 aa17■□□□□ 0.31
USP49-204ENST00000423567 MADDQ8WXG6 1647 aa16.99■□□□□ 0.31
USP49-204ENST00000423567 TSPY4P0CV99 314 aa16.99■□□□□ 0.31
USP49-204ENST00000423567 TSPY10P0CW01 314 aa16.99■□□□□ 0.31
USP49-204ENST00000423567 RTEL1-TNFRSF6BF6WH68 1400 aa16.98■□□□□ 0.31
USP49-204ENST00000423567 ESF1Q9H501 851 aaKnown RBP16.98■□□□□ 0.31
USP49-204ENST00000423567 AGLP35573 1532 aa16.97■□□□□ 0.31
USP49-204ENST00000423567 SIGLEC1Q9BZZ2 1709 aa16.97■□□□□ 0.31
USP49-204ENST00000423567 INO80Q9ULG1 1556 aaPredicted RBP16.97■□□□□ 0.31
USP49-204ENST00000423567 ARHGEF5Q12774 1597 aa16.94■□□□□ 0.3
USP49-204ENST00000423567 A2MP01023 1474 aa16.94■□□□□ 0.3
USP49-204ENST00000423567 RIMS1Q86UR5 1692 aaKnown RBP16.94■□□□□ 0.3
USP49-204ENST00000423567 FGD6Q6ZV73 1430 aa16.91■□□□□ 0.3
USP49-204ENST00000423567 FER1L4A9Z1Z3 1794 aa16.91■□□□□ 0.3
USP49-204ENST00000423567 DHX29Q7Z478 1369 aaKnown RBP16.89■□□□□ 0.3
USP49-204ENST00000423567 ADGBQ8N7X0 1667 aa16.89■□□□□ 0.29
USP49-204ENST00000423567 PTPN23Q9H3S7 1636 aa16.88■□□□□ 0.29
USP49-204ENST00000423567 PLXNC1O60486 1568 aa16.88■□□□□ 0.29
USP49-204ENST00000423567 CNTLNQ9NXG0 1405 aa16.87■□□□□ 0.29
USP49-204ENST00000423567 GGT6Q6P531 493 aa16.87■□□□□ 0.29
USP49-204ENST00000423567 TCOF1Q13428 1488 aaKnown RBP16.86■□□□□ 0.29
USP49-204ENST00000423567 FAM50AQ14320 339 aaKnown RBP16.85■□□□□ 0.29
USP49-204ENST00000423567 MAST1Q9Y2H9 1570 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 113.4 ms