RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 CDK11AQ9UQ88 783 aaPredicted RBP15.21■□□□□ 0.03
LIMS1-207ENST00000422797 PBRM1Q86U86 1689 aa15.2■□□□□ 0.02
LIMS1-207ENST00000422797 POLR1AO95602 1720 aaPredicted RBP15.2■□□□□ 0.02
LIMS1-207ENST00000422797 ADAMTS12P58397 1594 aa15.2■□□□□ 0.02
LIMS1-207ENST00000422797 HIRIP3Q9BW71 556 aaPredicted RBP15.2■□□□□ 0.02
LIMS1-207ENST00000422797 RPRD2Q5VT52 1461 aaKnown RBP15.2■□□□□ 0.02
LIMS1-207ENST00000422797 WASHC2AQ641Q2 1341 aa15.2■□□□□ 0.02
LIMS1-207ENST00000422797 DENND4BO75064 1496 aaPredicted RBP15.19■□□□□ 0.02
LIMS1-207ENST00000422797 DNMT1P26358 1616 aaKnown RBP15.18■□□□□ 0.02
LIMS1-207ENST00000422797 CCDC7Q96M83 1385 aa15.17■□□□□ 0.02
LIMS1-207ENST00000422797 MYT1LQ9UL68 1186 aa15.17■□□□□ 0.02
LIMS1-207ENST00000422797 MPHOSPH9Q99550 1183 aa15.16■□□□□ 0.02
LIMS1-207ENST00000422797 PPP4R2Q9NY27 417 aa15.16■□□□□ 0.02
LIMS1-207ENST00000422797 ZBED9Q6R2W3 1325 aa15.15■□□□□ 0.02
LIMS1-207ENST00000422797 DAPK1P53355 1430 aa15.15■□□□□ 0.02
LIMS1-207ENST00000422797 ANKRD30BQ9BXX2 1392 aa15.14■□□□□ 0.01
LIMS1-207ENST00000422797 TEX14Q8IWB6 1497 aa15.14■□□□□ 0.01
LIMS1-207ENST00000422797 RRP7BPQ9NSQ0 103 aa15.12■□□□□ 0.01
LIMS1-207ENST00000422797 ARID4BQ4LE39 1312 aaPredicted RBP15.12■□□□□ 0.01
LIMS1-207ENST00000422797 KDM6BO15054 1643 aa15.11■□□□□ 0.01
LIMS1-207ENST00000422797 PRKRIP1Q9H875 184 aaPredicted RBP15.11■□□□□ 0.01
LIMS1-207ENST00000422797 DMRT2Q9Y5R5 561 aa15.1■□□□□ 0.01
LIMS1-207ENST00000422797 SPATA31E1Q6ZUB1 1445 aa15.1■□□□□ 0.01
LIMS1-207ENST00000422797 CDK13Q14004 1512 aaKnown RBP15.09■□□□□ 0.01
LIMS1-207ENST00000422797 L3MBTL2Q969R5 705 aa15.09■□□□□ 0.01
LIMS1-207ENST00000422797 ITSN2Q9NZM3 1697 aa15.08■□□□□ 0.01
LIMS1-207ENST00000422797 KIAA0586Q9BVV6 1533 aa15.08■□□□□ 0
LIMS1-207ENST00000422797 ADGBQ8N7X0 1667 aa15.08■□□□□ 0
LIMS1-207ENST00000422797 KIAA0556O60303 1618 aa15.07■□□□□ 0
LIMS1-207ENST00000422797 ABCC5O15440 1437 aa15.07■□□□□ 0
LIMS1-207ENST00000422797 ADGRL2O95490 1459 aa15.06■□□□□ 0
LIMS1-207ENST00000422797 ERICH6Q7L0X2 663 aa15.06■□□□□ 0
LIMS1-207ENST00000422797 CHIC2Q9UKJ5 165 aa15.06■□□□□ 0
LIMS1-207ENST00000422797 RAPGEF6Q8TEU7 1601 aa15.06■□□□□ 0
LIMS1-207ENST00000422797 MRC2Q9UBG0 1479 aa15.05■□□□□ 0
LIMS1-207ENST00000422797 MRS2Q9HD23 443 aa15.05■□□□□ -0
LIMS1-207ENST00000422797 ROCK2O75116 1388 aaKnown RBP15.05■□□□□ -0
LIMS1-207ENST00000422797 MBD5Q9P267 1494 aa15.05■□□□□ -0
LIMS1-207ENST00000422797 IFT140Q96RY7 1462 aa15.04■□□□□ -0
LIMS1-207ENST00000422797 SMG6Q86US8 1419 aaKnown RBP15.04■□□□□ -0
LIMS1-207ENST00000422797 KIF14Q15058 1648 aa15.04■□□□□ -0
LIMS1-207ENST00000422797 ADCY10Q96PN6 1610 aa15.03■□□□□ -0
LIMS1-207ENST00000422797 TROQ12816 1431 aaPredicted RBP15.01□□□□□ -0.01
LIMS1-207ENST00000422797 KIF7Q2M1P5 1343 aa15.01□□□□□ -0.01
LIMS1-207ENST00000422797 NUP153P49790 1475 aaKnown RBP15.01□□□□□ -0.01
LIMS1-207ENST00000422797 KTN1Q86UP2 1357 aaKnown RBP15.01□□□□□ -0.01
LIMS1-207ENST00000422797 KIAA1107Q9UPP5 1409 aa15.01□□□□□ -0.01
LIMS1-207ENST00000422797 PZPP20742 1482 aa15□□□□□ -0.01
LIMS1-207ENST00000422797 DISP1Q96F81 1524 aa15□□□□□ -0.01
LIMS1-207ENST00000422797 CROCC2H7BZ55 1655 aa15□□□□□ -0.01
LIMS1-207ENST00000422797 ARHGEF12Q9NZN5 1544 aa14.99□□□□□ -0.01
LIMS1-207ENST00000422797 SLC4A1APQ9BWU0 796 aaKnown RBP14.99□□□□□ -0.01
LIMS1-207ENST00000422797 UHRF1BP1Q6BDS2 1440 aa14.98□□□□□ -0.01
LIMS1-207ENST00000422797 MAPK8IP2Q13387 824 aaPredicted RBP14.98□□□□□ -0.01
LIMS1-207ENST00000422797 CAMSAP2Q08AD1 1489 aa14.98□□□□□ -0.01
LIMS1-207ENST00000422797 SHANK2Q9UPX8 1470 aa14.98□□□□□ -0.01
LIMS1-207ENST00000422797 NBPF8Q3BBV2 869 aa14.97□□□□□ -0.01
LIMS1-207ENST00000422797 BCL11AQ9H165 835 aa14.96□□□□□ -0.02
LIMS1-207ENST00000422797 ANKRD30AQ9BXX3 1397 aa14.95□□□□□ -0.02
LIMS1-207ENST00000422797 RALGAPBQ86X10 1494 aa14.95□□□□□ -0.02
LIMS1-207ENST00000422797 C11orf95C9JLR9 678 aaPredicted RBP14.95□□□□□ -0.02
LIMS1-207ENST00000422797 FAM9BQ8IZU0 186 aa14.95□□□□□ -0.02
LIMS1-207ENST00000422797 RNF123Q5XPI4 1314 aa14.95□□□□□ -0.02
LIMS1-207ENST00000422797 DHX29Q7Z478 1369 aaKnown RBP14.95□□□□□ -0.02
LIMS1-207ENST00000422797 KDM5DQ9BY66 1539 aa14.94□□□□□ -0.02
LIMS1-207ENST00000422797 KDM5CP41229 1560 aa14.94□□□□□ -0.02
LIMS1-207ENST00000422797 USP47Q96K76 1375 aa14.94□□□□□ -0.02
LIMS1-207ENST00000422797 GRIN2AQ12879 1464 aa14.94□□□□□ -0.02
LIMS1-207ENST00000422797 NUDCQ9Y266 331 aa14.93□□□□□ -0.02
LIMS1-207ENST00000422797 IRX6P78412 446 aaPredicted RBP14.92□□□□□ -0.02
LIMS1-207ENST00000422797 POTEHQ6S545 545 aa14.92□□□□□ -0.02
LIMS1-207ENST00000422797 GPATCH8Q9UKJ3 1502 aaKnown RBP14.91□□□□□ -0.02
LIMS1-207ENST00000422797 MAGI1Q96QZ7 1491 aaPredicted RBP14.91□□□□□ -0.02
LIMS1-207ENST00000422797 CCDC184Q52MB2 194 aa14.91□□□□□ -0.02
LIMS1-207ENST00000422797 KIF15Q9NS87 1388 aa14.89□□□□□ -0.03
LIMS1-207ENST00000422797 CFDP1Q9UEE9 299 aaPredicted RBP14.89□□□□□ -0.03
LIMS1-207ENST00000422797 CARMIL2Q6F5E8 1435 aa14.89□□□□□ -0.03
LIMS1-207ENST00000422797 BRD4O60885 1362 aaPredicted RBP14.88□□□□□ -0.03
LIMS1-207ENST00000422797 ANKRD50Q9ULJ7 1429 aa14.87□□□□□ -0.03
LIMS1-207ENST00000422797 INSRP06213 1382 aa14.86□□□□□ -0.03
LIMS1-207ENST00000422797 BCORL1Q5H9F3 1711 aa14.86□□□□□ -0.03
LIMS1-207ENST00000422797 RALBP1Q15311 655 aa14.85□□□□□ -0.03
LIMS1-207ENST00000422797 ZMYM4Q5VZL5 1548 aa14.85□□□□□ -0.03
LIMS1-207ENST00000422797 EIF4G3O43432 1585 aaKnown RBP14.84□□□□□ -0.03
LIMS1-207ENST00000422797 ARHGEF5Q12774 1597 aa14.84□□□□□ -0.03
LIMS1-207ENST00000422797 PRG4Q92954 1404 aaPredicted RBP14.84□□□□□ -0.03
LIMS1-207ENST00000422797 B4GALNT3Q6L9W6 998 aa14.84□□□□□ -0.03
LIMS1-207ENST00000422797 LRPPRCP42704 1394 aaKnown RBP14.84□□□□□ -0.03
LIMS1-207ENST00000422797 CEP170Q5SW79 1584 aa14.84□□□□□ -0.03
LIMS1-207ENST00000422797 ZNF644Q9H582 1327 aaPredicted RBP14.84□□□□□ -0.03
LIMS1-207ENST00000422797 PTPRGP23470 1445 aa14.83□□□□□ -0.03
LIMS1-207ENST00000422797 PKD2Q13563 968 aa14.82□□□□□ -0.04
LIMS1-207ENST00000422797 NOP58Q9Y2X3 529 aaKnown RBP14.82□□□□□ -0.04
LIMS1-207ENST00000422797 SYNJ2O15056 1496 aa14.82□□□□□ -0.04
LIMS1-207ENST00000422797 E9PCH4 1651 aa14.82□□□□□ -0.04
LIMS1-207ENST00000422797 ZNF608Q9ULD9 1512 aaPredicted RBP14.81□□□□□ -0.04
LIMS1-207ENST00000422797 C9orf84Q5VXU9 1444 aa14.81□□□□□ -0.04
LIMS1-207ENST00000422797 MYBBP1AQ9BQG0 1328 aaKnown RBP14.81□□□□□ -0.04
LIMS1-207ENST00000422797 ANP32AP39687 249 aaKnown RBP14.81□□□□□ -0.04
LIMS1-207ENST00000422797 PNISRQ8TF01 805 aaKnown RBP14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms