RNA–Protein interactions for RNA: ENST00000420503.1

LINC00339-203, long intergenic non-protein coding RNA 339, humanhuman

TSL 3

Gene LINC00339, Length 771 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-203ENST00000420503 SCAPERQ9BY12 1400 aa21.54■■□□□ 1.04
LINC00339-203ENST00000420503 FBXO41Q8TF61 875 aa21.53■■□□□ 1.04
LINC00339-203ENST00000420503 POGZQ7Z3K3 1410 aa21.53■■□□□ 1.04
LINC00339-203ENST00000420503 PLCH2O75038 1416 aa21.52■■□□□ 1.04
LINC00339-203ENST00000420503 UBTFP17480 764 aaKnown RBP21.5■■□□□ 1.03
LINC00339-203ENST00000420503 LRRIQ1Q96JM4 1722 aa21.49■■□□□ 1.03
LINC00339-203ENST00000420503 FER1L4A9Z1Z3 1794 aa21.48■■□□□ 1.03
LINC00339-203ENST00000420503 MYO5CQ9NQX4 1742 aa21.47■■□□□ 1.03
LINC00339-203ENST00000420503 MAGI2Q86UL8 1455 aa21.45■■□□□ 1.03
LINC00339-203ENST00000420503 FMN1Q68DA7 1419 aa21.43■■□□□ 1.02
LINC00339-203ENST00000420503 ARHGEF12Q9NZN5 1544 aa21.42■■□□□ 1.02
LINC00339-203ENST00000420503 ATP10AO60312 1499 aa21.41■■□□□ 1.02
LINC00339-203ENST00000420503 CEBPAP49715 358 aaPredicted RBP21.41■■□□□ 1.02
LINC00339-203ENST00000420503 CHIC1Q5VXU3 224 aa21.41■■□□□ 1.02
LINC00339-203ENST00000420503 TROQ12816 1431 aaPredicted RBP21.39■■□□□ 1.02
LINC00339-203ENST00000420503 C9orf84Q5VXU9 1444 aa21.39■■□□□ 1.02
LINC00339-203ENST00000420503 EFCAB2Q5VUJ9 269 aa21.39■■□□□ 1.01
LINC00339-203ENST00000420503 AFAP1Q8N556 730 aa21.39■■□□□ 1.01
LINC00339-203ENST00000420503 ARHGAP5Q13017 1502 aa21.39■■□□□ 1.01
LINC00339-203ENST00000420503 KDM5CP41229 1560 aa21.36■■□□□ 1.01
LINC00339-203ENST00000420503 CDC42BPBQ9Y5S2 1711 aa21.35■■□□□ 1.01
LINC00339-203ENST00000420503 DIP2CQ9Y2E4 1556 aa21.35■■□□□ 1.01
LINC00339-203ENST00000420503 ABCA6Q8N139 1617 aa21.33■■□□□ 1.01
LINC00339-203ENST00000420503 ZNF518AQ6AHZ1 1483 aa21.32■■□□□ 1
LINC00339-203ENST00000420503 TRAPPC8Q9Y2L5 1435 aa21.31■■□□□ 1
LINC00339-203ENST00000420503 CDK11AQ9UQ88 783 aaPredicted RBP21.3■■□□□ 1
LINC00339-203ENST00000420503 PREX1Q8TCU6 1659 aa21.3■■□□□ 1
LINC00339-203ENST00000420503 CLIP1P30622 1438 aa21.29■■□□□ 1
LINC00339-203ENST00000420503 PREX2Q70Z35 1606 aa21.28■■□□□ 1
LINC00339-203ENST00000420503 ABCC1P33527 1531 aa21.28■■□□□ 1
LINC00339-203ENST00000420503 CERKQ8TCT0 537 aa21.27■■□□□ 1
LINC00339-203ENST00000420503 MYT1LQ9UL68 1186 aa21.27■■□□□ 1
LINC00339-203ENST00000420503 STRCQ7RTU9 1775 aa21.27■■□□□ 1
LINC00339-203ENST00000420503 ITSN2Q9NZM3 1697 aa21.25■□□□□ 0.99
LINC00339-203ENST00000420503 CASKIN1Q8WXD9 1431 aa21.24■□□□□ 0.99
LINC00339-203ENST00000420503 CDC42BPAQ5VT25 1732 aa21.24■□□□□ 0.99
LINC00339-203ENST00000420503 C3P01024 1663 aa21.23■□□□□ 0.99
LINC00339-203ENST00000420503 MLH3Q9UHC1 1453 aa21.22■□□□□ 0.99
LINC00339-203ENST00000420503 KIDINS220Q9ULH0 1771 aa21.22■□□□□ 0.99
LINC00339-203ENST00000420503 REREQ9P2R6 1566 aa21.22■□□□□ 0.99
LINC00339-203ENST00000420503 CCDC18Q5T9S5 1454 aa21.19■□□□□ 0.98
LINC00339-203ENST00000420503 UHRF1BP1Q6BDS2 1440 aa21.18■□□□□ 0.98
LINC00339-203ENST00000420503 SAMD9LQ8IVG5 1584 aa21.17■□□□□ 0.98
LINC00339-203ENST00000420503 AGLP35573 1532 aa21.16■□□□□ 0.98
LINC00339-203ENST00000420503 SETD1BQ9UPS6 1966 aaKnown RBP21.16■□□□□ 0.98
LINC00339-203ENST00000420503 ZNF777Q9ULD5 760 aaPredicted RBP21.15■□□□□ 0.98
LINC00339-203ENST00000420503 SYCP2Q9BX26 1530 aa21.14■□□□□ 0.98
LINC00339-203ENST00000420503 FYCO1Q9BQS8 1478 aa21.13■□□□□ 0.97
LINC00339-203ENST00000420503 GPATCH8Q9UKJ3 1502 aaKnown RBP21.12■□□□□ 0.97
LINC00339-203ENST00000420503 HNRNPMP52272 730 aaKnown RBP eCLIP21.1■□□□□ 0.97
LINC00339-203ENST00000420503 SUPT6HQ7KZ85 1726 aaKnown RBP21.09■□□□□ 0.97
LINC00339-203ENST00000420503 ESF1Q9H501 851 aaKnown RBP21.04■□□□□ 0.96
LINC00339-203ENST00000420503 LTBP4Q8N2S1 1624 aa21.04■□□□□ 0.96
LINC00339-203ENST00000420503 NCOA1Q15788 1441 aa21.04■□□□□ 0.96
LINC00339-203ENST00000420503 SPAG9O60271 1321 aaKnown RBP21.04■□□□□ 0.96
LINC00339-203ENST00000420503 INO80Q9ULG1 1556 aaPredicted RBP21.03■□□□□ 0.96
LINC00339-203ENST00000420503 ATP7AQ04656 1500 aa21.03■□□□□ 0.96
LINC00339-203ENST00000420503 PTPRTO14522 1441 aa21.03■□□□□ 0.96
LINC00339-203ENST00000420503 CLTCQ00610 1675 aaKnown RBP21.02■□□□□ 0.95
LINC00339-203ENST00000420503 DMRT2Q9Y5R5 561 aa21.01■□□□□ 0.95
LINC00339-203ENST00000420503 CNTLNQ9NXG0 1405 aa21.01■□□□□ 0.95
LINC00339-203ENST00000420503 PLXNC1O60486 1568 aa21.01■□□□□ 0.95
LINC00339-203ENST00000420503 ZNF644Q9H582 1327 aaPredicted RBP21.01■□□□□ 0.95
LINC00339-203ENST00000420503 CAMSAP1Q5T5Y3 1602 aa21■□□□□ 0.95
LINC00339-203ENST00000420503 MROH2AA6NES4 1674 aa20.99■□□□□ 0.95
LINC00339-203ENST00000420503 ZMYM3Q14202 1370 aa20.99■□□□□ 0.95
LINC00339-203ENST00000420503 ILDR2Q71H61 639 aa20.99■□□□□ 0.95
LINC00339-203ENST00000420503 CFDP1Q9UEE9 299 aaPredicted RBP20.98■□□□□ 0.95
LINC00339-203ENST00000420503 CCNB3Q8WWL7 1395 aa20.97■□□□□ 0.95
LINC00339-203ENST00000420503 A2MP01023 1474 aa20.97■□□□□ 0.95
LINC00339-203ENST00000420503 NCKAP5LQ9HCH0 1330 aa20.97■□□□□ 0.95
LINC00339-203ENST00000420503 TIAM1Q13009 1591 aa20.97■□□□□ 0.95
LINC00339-203ENST00000420503 NPATQ14207 1427 aa20.95■□□□□ 0.95
LINC00339-203ENST00000420503 KIAA1107Q9UPP5 1409 aa20.95■□□□□ 0.95
LINC00339-203ENST00000420503 MYO3AQ8NEV4 1616 aa20.95■□□□□ 0.94
LINC00339-203ENST00000420503 DISP3Q9P2K9 1392 aa20.95■□□□□ 0.94
LINC00339-203ENST00000420503 MTUS2Q5JR59 1369 aa20.94■□□□□ 0.94
LINC00339-203ENST00000420503 GGT6Q6P531 493 aa20.93■□□□□ 0.94
LINC00339-203ENST00000420503 PTPRKQ15262 1439 aa20.93■□□□□ 0.94
LINC00339-203ENST00000420503 PLEKHH2Q8IVE3 1493 aa20.91■□□□□ 0.94
LINC00339-203ENST00000420503 ZNF335Q9H4Z2 1342 aaPredicted RBP20.91■□□□□ 0.94
LINC00339-203ENST00000420503 MBD5Q9P267 1494 aa20.91■□□□□ 0.94
LINC00339-203ENST00000420503 ZNF142P52746 1687 aaPredicted RBP20.9■□□□□ 0.94
LINC00339-203ENST00000420503 CEP170BQ9Y4F5 1589 aaPredicted RBP20.89■□□□□ 0.94
LINC00339-203ENST00000420503 ADGBQ8N7X0 1667 aa20.88■□□□□ 0.93
LINC00339-203ENST00000420503 EHBP1L1Q8N3D4 1523 aa20.87■□□□□ 0.93
LINC00339-203ENST00000420503 SPATA31D1Q6ZQQ2 1576 aa20.85■□□□□ 0.93
LINC00339-203ENST00000420503 TCOF1Q13428 1488 aaKnown RBP20.84■□□□□ 0.93
LINC00339-203ENST00000420503 PLA2R1Q13018 1463 aa20.82■□□□□ 0.92
LINC00339-203ENST00000420503 CEP162Q5TB80 1403 aa20.82■□□□□ 0.92
LINC00339-203ENST00000420503 FBXO31Q5XUX0 539 aaPredicted RBP20.81■□□□□ 0.92
LINC00339-203ENST00000420503 IQSEC2Q5JU85 1478 aa20.81■□□□□ 0.92
LINC00339-203ENST00000420503 DNMT1P26358 1616 aaKnown RBP20.79■□□□□ 0.92
LINC00339-203ENST00000420503 CAMSAP2Q08AD1 1489 aa20.79■□□□□ 0.92
LINC00339-203ENST00000420503 NCOA2Q15596 1464 aa20.79■□□□□ 0.92
LINC00339-203ENST00000420503 DHX29Q7Z478 1369 aaKnown RBP20.78■□□□□ 0.92
LINC00339-203ENST00000420503 A2ML1A8K2U0 1454 aa20.77■□□□□ 0.92
LINC00339-203ENST00000420503 RTEL1-TNFRSF6BF6WH68 1400 aa20.77■□□□□ 0.91
LINC00339-203ENST00000420503 KIF3BO15066 747 aa20.76■□□□□ 0.91
LINC00339-203ENST00000420503 NEURL4Q96JN8 1562 aa20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms