RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 COL17A1Q9UMD9 1497 aaPredicted RBP19.75■□□□□ 0.75
SKA1-203ENST00000417656 MAP3K1Q13233 1512 aa19.75■□□□□ 0.75
SKA1-203ENST00000417656 ARAP3Q8WWN8 1544 aa19.75■□□□□ 0.75
SKA1-203ENST00000417656 FANCAO15360 1455 aa19.74■□□□□ 0.75
SKA1-203ENST00000417656 PLCH2O75038 1416 aa19.74■□□□□ 0.75
SKA1-203ENST00000417656 CDC42BPBQ9Y5S2 1711 aa19.73■□□□□ 0.75
SKA1-203ENST00000417656 SUPT6HQ7KZ85 1726 aaKnown RBP19.73■□□□□ 0.75
SKA1-203ENST00000417656 ARHGAP5Q13017 1502 aa19.72■□□□□ 0.75
SKA1-203ENST00000417656 LRRC9Q6ZRR7 1453 aa19.71■□□□□ 0.75
SKA1-203ENST00000417656 FRMPD1Q5SYB0 1578 aa19.68■□□□□ 0.74
SKA1-203ENST00000417656 ITSN2Q9NZM3 1697 aa19.68■□□□□ 0.74
SKA1-203ENST00000417656 PHLDB1Q86UU1 1377 aa19.68■□□□□ 0.74
SKA1-203ENST00000417656 AKNAQ7Z591 1439 aa19.68■□□□□ 0.74
SKA1-203ENST00000417656 NCOA2Q15596 1464 aa19.67■□□□□ 0.74
SKA1-203ENST00000417656 ADGRL1O94910 1474 aa19.66■□□□□ 0.74
SKA1-203ENST00000417656 GPATCH8Q9UKJ3 1502 aaKnown RBP19.66■□□□□ 0.74
SKA1-203ENST00000417656 RICTORQ6R327 1708 aa19.65■□□□□ 0.74
SKA1-203ENST00000417656 CCNB3Q8WWL7 1395 aa19.64■□□□□ 0.73
SKA1-203ENST00000417656 ABCC1P33527 1531 aa19.63■□□□□ 0.73
SKA1-203ENST00000417656 KANK4Q5T7N3 995 aaPredicted RBP19.63■□□□□ 0.73
SKA1-203ENST00000417656 SAMD9LQ8IVG5 1584 aa19.62■□□□□ 0.73
SKA1-203ENST00000417656 APLP2Q06481 763 aa19.62■□□□□ 0.73
SKA1-203ENST00000417656 DENND4BO75064 1496 aaPredicted RBP19.61■□□□□ 0.73
SKA1-203ENST00000417656 EFCAB2Q5VUJ9 269 aa19.61■□□□□ 0.73
SKA1-203ENST00000417656 POGZQ7Z3K3 1410 aa19.59■□□□□ 0.73
SKA1-203ENST00000417656 SCAPERQ9BY12 1400 aa19.59■□□□□ 0.73
SKA1-203ENST00000417656 ZMYM4Q5VZL5 1548 aa19.57■□□□□ 0.72
SKA1-203ENST00000417656 RAPGEF3O95398 923 aa19.57■□□□□ 0.72
SKA1-203ENST00000417656 SYCP2Q9BX26 1530 aa19.56■□□□□ 0.72
SKA1-203ENST00000417656 ARHGEF12Q9NZN5 1544 aa19.56■□□□□ 0.72
SKA1-203ENST00000417656 ARHGEF40Q8TER5 1519 aa19.54■□□□□ 0.72
SKA1-203ENST00000417656 CFDP1Q9UEE9 299 aaPredicted RBP19.53■□□□□ 0.72
SKA1-203ENST00000417656 ZNF777Q9ULD5 760 aaPredicted RBP19.53■□□□□ 0.72
SKA1-203ENST00000417656 KDM5CP41229 1560 aa19.53■□□□□ 0.72
SKA1-203ENST00000417656 ZNF518AQ6AHZ1 1483 aa19.52■□□□□ 0.72
SKA1-203ENST00000417656 MYOM3Q5VTT5 1437 aa19.51■□□□□ 0.71
SKA1-203ENST00000417656 CAMSAP2Q08AD1 1489 aa19.5■□□□□ 0.71
SKA1-203ENST00000417656 PLEKHH2Q8IVE3 1493 aa19.5■□□□□ 0.71
SKA1-203ENST00000417656 ZFYVE16Q7Z3T8 1539 aa19.5■□□□□ 0.71
SKA1-203ENST00000417656 TRAPPC8Q9Y2L5 1435 aa19.5■□□□□ 0.71
SKA1-203ENST00000417656 HECW2Q9P2P5 1572 aa19.49■□□□□ 0.71
SKA1-203ENST00000417656 KIAA1107Q9UPP5 1409 aa19.47■□□□□ 0.71
SKA1-203ENST00000417656 ZNF644Q9H582 1327 aaPredicted RBP19.47■□□□□ 0.71
SKA1-203ENST00000417656 YEATS2Q9ULM3 1422 aa19.46■□□□□ 0.71
SKA1-203ENST00000417656 MAGI2Q86UL8 1455 aa19.45■□□□□ 0.7
SKA1-203ENST00000417656 ABCA6Q8N139 1617 aa19.44■□□□□ 0.7
SKA1-203ENST00000417656 AFAP1Q8N556 730 aa19.44■□□□□ 0.7
SKA1-203ENST00000417656 PTPN23Q9H3S7 1636 aa19.43■□□□□ 0.7
SKA1-203ENST00000417656 MIA2Q96PC5 1412 aa19.43■□□□□ 0.7
SKA1-203ENST00000417656 INO80Q9ULG1 1556 aaPredicted RBP19.43■□□□□ 0.7
SKA1-203ENST00000417656 MBD5Q9P267 1494 aa19.42■□□□□ 0.7
SKA1-203ENST00000417656 KIDINS220Q9ULH0 1771 aa19.42■□□□□ 0.7
SKA1-203ENST00000417656 DIP2CQ9Y2E4 1556 aa19.42■□□□□ 0.7
SKA1-203ENST00000417656 HNRNPMP52272 730 aaKnown RBP eCLIP19.42■□□□□ 0.74e-10■■■□□ 18.6
SKA1-203ENST00000417656 SIGLEC1Q9BZZ2 1709 aa19.41■□□□□ 0.7
SKA1-203ENST00000417656 FGD6Q6ZV73 1430 aa19.41■□□□□ 0.7
SKA1-203ENST00000417656 MLH3Q9UHC1 1453 aa19.41■□□□□ 0.7
SKA1-203ENST00000417656 ARHGEF5Q12774 1597 aa19.4■□□□□ 0.7
SKA1-203ENST00000417656 CCDC141Q6ZP82 1450 aa19.4■□□□□ 0.7
SKA1-203ENST00000417656 ATP7AQ04656 1500 aa19.4■□□□□ 0.7
SKA1-203ENST00000417656 PPARGC1BQ86YN6 1023 aaKnown RBP19.39■□□□□ 0.69
SKA1-203ENST00000417656 TCOF1Q13428 1488 aaKnown RBP19.37■□□□□ 0.69
SKA1-203ENST00000417656 CROCC2H7BZ55 1655 aa19.36■□□□□ 0.69
SKA1-203ENST00000417656 C9orf84Q5VXU9 1444 aa19.35■□□□□ 0.69
SKA1-203ENST00000417656 MYT1LQ9UL68 1186 aa19.35■□□□□ 0.69
SKA1-203ENST00000417656 ATP10AO60312 1499 aa19.35■□□□□ 0.69
SKA1-203ENST00000417656 SPAG9O60271 1321 aaKnown RBP19.34■□□□□ 0.69
SKA1-203ENST00000417656 REREQ9P2R6 1566 aa19.34■□□□□ 0.69
SKA1-203ENST00000417656 DNMT1P26358 1616 aaKnown RBP19.33■□□□□ 0.68
SKA1-203ENST00000417656 BCORL1Q5H9F3 1711 aa19.32■□□□□ 0.68
SKA1-203ENST00000417656 ADGBQ8N7X0 1667 aa19.32■□□□□ 0.68
SKA1-203ENST00000417656 MAST1Q9Y2H9 1570 aa19.31■□□□□ 0.68
SKA1-203ENST00000417656 RTEL1-TNFRSF6BF6WH68 1400 aa19.28■□□□□ 0.68
SKA1-203ENST00000417656 PLXNC1O60486 1568 aa19.27■□□□□ 0.68
SKA1-203ENST00000417656 ARID4BQ4LE39 1312 aaPredicted RBP19.27■□□□□ 0.68
SKA1-203ENST00000417656 ADAMTSL3P82987 1691 aa19.27■□□□□ 0.68
SKA1-203ENST00000417656 SHANK2Q9UPX8 1470 aa19.27■□□□□ 0.67
SKA1-203ENST00000417656 ABCC5O15440 1437 aa19.26■□□□□ 0.67
SKA1-203ENST00000417656 DAPK1P53355 1430 aa19.26■□□□□ 0.67
SKA1-203ENST00000417656 MADDQ8WXG6 1647 aa19.25■□□□□ 0.67
SKA1-203ENST00000417656 A2MP01023 1474 aa19.25■□□□□ 0.67
SKA1-203ENST00000417656 KDM4FA0A1W2PPD8 638 aa19.25■□□□□ 0.67
SKA1-203ENST00000417656 RSPH4AQ5TD94 716 aa19.25■□□□□ 0.67
SKA1-203ENST00000417656 AGLP35573 1532 aa19.25■□□□□ 0.67
SKA1-203ENST00000417656 FAM50AQ14320 339 aaKnown RBP19.23■□□□□ 0.67
SKA1-203ENST00000417656 FER1L4A9Z1Z3 1794 aa19.22■□□□□ 0.67
SKA1-203ENST00000417656 TSPY4P0CV99 314 aa19.21■□□□□ 0.67
SKA1-203ENST00000417656 TSPY10P0CW01 314 aa19.21■□□□□ 0.67
SKA1-203ENST00000417656 RIMS1Q86UR5 1692 aaKnown RBP19.2■□□□□ 0.66
SKA1-203ENST00000417656 RRBP1Q9P2E9 1410 aaKnown RBP19.19■□□□□ 0.66
SKA1-203ENST00000417656 MLECQ14165 292 aa19.18■□□□□ 0.66
SKA1-203ENST00000417656 DHX29Q7Z478 1369 aaKnown RBP19.15■□□□□ 0.66
SKA1-203ENST00000417656 ADGRL2O95490 1459 aa19.15■□□□□ 0.66
SKA1-203ENST00000417656 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.14■□□□□ 0.65
SKA1-203ENST00000417656 DUOX2Q9NRD8 1548 aa19.14■□□□□ 0.65
SKA1-203ENST00000417656 EIF2AK4Q9P2K8 1649 aaKnown RBP19.14■□□□□ 0.65
SKA1-203ENST00000417656 KIF15Q9NS87 1388 aa19.13■□□□□ 0.65
SKA1-203ENST00000417656 PTPRKQ15262 1439 aa19.13■□□□□ 0.65
SKA1-203ENST00000417656 PTPRMP28827 1452 aa19.11■□□□□ 0.65
SKA1-203ENST00000417656 CHIC2Q9UKJ5 165 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms