RNA–Protein interactions for RNA: ENST00000417088.2

RPS28-201, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-201ENST00000417088 POGZQ7Z3K3 1410 aa24.36■■□□□ 1.49
RPS28-201ENST00000417088 TROQ12816 1431 aaPredicted RBP24.35■■□□□ 1.49
RPS28-201ENST00000417088 KIF14Q15058 1648 aa24.33■■□□□ 1.49
RPS28-201ENST00000417088 SIGLEC1Q9BZZ2 1709 aa24.32■■□□□ 1.48
RPS28-201ENST00000417088 MYO5CQ9NQX4 1742 aa24.32■■□□□ 1.48
RPS28-201ENST00000417088 RIMS1Q86UR5 1692 aaKnown RBP24.31■■□□□ 1.48
RPS28-201ENST00000417088 CLIP1P30622 1438 aa24.29■■□□□ 1.48
RPS28-201ENST00000417088 LRRIQ1Q96JM4 1722 aa24.29■■□□□ 1.48
RPS28-201ENST00000417088 LMTK3Q96Q04 1460 aa24.27■■□□□ 1.48
RPS28-201ENST00000417088 MLECQ14165 292 aa24.27■■□□□ 1.48
RPS28-201ENST00000417088 PCF11O94913 1555 aaKnown RBP24.27■■□□□ 1.48
RPS28-201ENST00000417088 ATP10AO60312 1499 aa24.26■■□□□ 1.47
RPS28-201ENST00000417088 CASKIN1Q8WXD9 1431 aa24.25■■□□□ 1.47
RPS28-201ENST00000417088 ARHGAP5Q13017 1502 aa24.25■■□□□ 1.47
RPS28-201ENST00000417088 PLPPR3Q6T4P5 718 aa24.23■■□□□ 1.47
RPS28-201ENST00000417088 AFAP1Q8N556 730 aa24.23■■□□□ 1.47
RPS28-201ENST00000417088 ZNF518AQ6AHZ1 1483 aa24.22■■□□□ 1.47
RPS28-201ENST00000417088 C9orf84Q5VXU9 1444 aa24.21■■□□□ 1.47
RPS28-201ENST00000417088 CCDC18Q5T9S5 1454 aa24.2■■□□□ 1.47
RPS28-201ENST00000417088 KDM5CP41229 1560 aa24.18■■□□□ 1.46
RPS28-201ENST00000417088 ARHGEF12Q9NZN5 1544 aa24.16■■□□□ 1.46
RPS28-201ENST00000417088 CDC42BPBQ9Y5S2 1711 aa24.16■■□□□ 1.46
RPS28-201ENST00000417088 HSPA2P54652 639 aa24.16■■□□□ 1.46
RPS28-201ENST00000417088 FER1L4A9Z1Z3 1794 aa24.16■■□□□ 1.46
RPS28-201ENST00000417088 MYT1LQ9UL68 1186 aa24.14■■□□□ 1.45
RPS28-201ENST00000417088 FYCO1Q9BQS8 1478 aa24.13■■□□□ 1.45
RPS28-201ENST00000417088 PREX2Q70Z35 1606 aa24.13■■□□□ 1.45
RPS28-201ENST00000417088 TRAPPC8Q9Y2L5 1435 aa24.11■■□□□ 1.45
RPS28-201ENST00000417088 FBXO41Q8TF61 875 aa24.11■■□□□ 1.45
RPS28-201ENST00000417088 MLH3Q9UHC1 1453 aa24.11■■□□□ 1.45
RPS28-201ENST00000417088 DIP2CQ9Y2E4 1556 aa24.09■■□□□ 1.45
RPS28-201ENST00000417088 ABCC1P33527 1531 aa24.09■■□□□ 1.45
RPS28-201ENST00000417088 CEBPAP49715 358 aaPredicted RBP24.08■■□□□ 1.45
RPS28-201ENST00000417088 REREQ9P2R6 1566 aa24.06■■□□□ 1.44
RPS28-201ENST00000417088 ABCA6Q8N139 1617 aa24.05■■□□□ 1.44
RPS28-201ENST00000417088 CDC42BPAQ5VT25 1732 aa24.04■■□□□ 1.44
RPS28-201ENST00000417088 ITSN2Q9NZM3 1697 aa24.04■■□□□ 1.44
RPS28-201ENST00000417088 ZNF777Q9ULD5 760 aaPredicted RBP24.02■■□□□ 1.44
RPS28-201ENST00000417088 AGLP35573 1532 aa24■■□□□ 1.43
RPS28-201ENST00000417088 GPATCH8Q9UKJ3 1502 aaKnown RBP24■■□□□ 1.43
RPS28-201ENST00000417088 KIDINS220Q9ULH0 1771 aa23.98■■□□□ 1.43
RPS28-201ENST00000417088 PREX1Q8TCU6 1659 aa23.97■■□□□ 1.43
RPS28-201ENST00000417088 SAMD9LQ8IVG5 1584 aa23.96■■□□□ 1.43
RPS28-201ENST00000417088 HNRNPMP52272 730 aaKnown RBP eCLIP23.95■■□□□ 1.42
RPS28-201ENST00000417088 SYCP2Q9BX26 1530 aa23.94■■□□□ 1.42
RPS28-201ENST00000417088 CFDP1Q9UEE9 299 aaPredicted RBP23.93■■□□□ 1.42
RPS28-201ENST00000417088 MTUS2Q5JR59 1369 aa23.92■■□□□ 1.42
RPS28-201ENST00000417088 CCNB3Q8WWL7 1395 aa23.92■■□□□ 1.42
RPS28-201ENST00000417088 SPAG9O60271 1321 aaKnown RBP23.92■■□□□ 1.42
RPS28-201ENST00000417088 ESF1Q9H501 851 aaKnown RBP23.92■■□□□ 1.42
RPS28-201ENST00000417088 SETD1BQ9UPS6 1966 aaKnown RBP23.92■■□□□ 1.42
RPS28-201ENST00000417088 UHRF1BP1Q6BDS2 1440 aa23.92■■□□□ 1.42
RPS28-201ENST00000417088 KIAA1107Q9UPP5 1409 aa23.91■■□□□ 1.42
RPS28-201ENST00000417088 C3P01024 1663 aa23.89■■□□□ 1.41
RPS28-201ENST00000417088 PLEKHH2Q8IVE3 1493 aa23.88■■□□□ 1.41
RPS28-201ENST00000417088 CERKQ8TCT0 537 aa23.87■■□□□ 1.41
RPS28-201ENST00000417088 CNTLNQ9NXG0 1405 aa23.86■■□□□ 1.41
RPS28-201ENST00000417088 ATP7AQ04656 1500 aa23.84■■□□□ 1.41
RPS28-201ENST00000417088 CEP162Q5TB80 1403 aa23.84■■□□□ 1.41
RPS28-201ENST00000417088 STRCQ7RTU9 1775 aa23.83■■□□□ 1.41
RPS28-201ENST00000417088 DMRT2Q9Y5R5 561 aa23.83■■□□□ 1.41
RPS28-201ENST00000417088 ZNF644Q9H582 1327 aaPredicted RBP23.83■■□□□ 1.4
RPS28-201ENST00000417088 TIAM1Q13009 1591 aa23.81■■□□□ 1.4
RPS28-201ENST00000417088 INO80Q9ULG1 1556 aaPredicted RBP23.81■■□□□ 1.4
RPS28-201ENST00000417088 EHBP1L1Q8N3D4 1523 aa23.8■■□□□ 1.4
RPS28-201ENST00000417088 A2MP01023 1474 aa23.8■■□□□ 1.4
RPS28-201ENST00000417088 SUPT6HQ7KZ85 1726 aaKnown RBP23.79■■□□□ 1.4
RPS28-201ENST00000417088 ZMYM3Q14202 1370 aa23.78■■□□□ 1.4
RPS28-201ENST00000417088 PLXNC1O60486 1568 aa23.78■■□□□ 1.4
RPS28-201ENST00000417088 MBD5Q9P267 1494 aa23.76■■□□□ 1.39
RPS28-201ENST00000417088 MROH2AA6NES4 1674 aa23.76■■□□□ 1.39
RPS28-201ENST00000417088 NPATQ14207 1427 aa23.76■■□□□ 1.39
RPS28-201ENST00000417088 GGT6Q6P531 493 aa23.74■■□□□ 1.39
RPS28-201ENST00000417088 PTPRTO14522 1441 aa23.74■■□□□ 1.39
RPS28-201ENST00000417088 RTEL1-TNFRSF6BF6WH68 1400 aa23.7■■□□□ 1.38
RPS28-201ENST00000417088 NCOA1Q15788 1441 aa23.7■■□□□ 1.38
RPS28-201ENST00000417088 CLTCQ00610 1675 aaKnown RBP23.69■■□□□ 1.38
RPS28-201ENST00000417088 NCOA2Q15596 1464 aa23.68■■□□□ 1.38
RPS28-201ENST00000417088 ADGBQ8N7X0 1667 aa23.68■■□□□ 1.38
RPS28-201ENST00000417088 PPP6R1Q9UPN7 881 aa23.68■■□□□ 1.38
RPS28-201ENST00000417088 PTPRKQ15262 1439 aa23.66■■□□□ 1.38
RPS28-201ENST00000417088 DHX29Q7Z478 1369 aaKnown RBP23.65■■□□□ 1.38
RPS28-201ENST00000417088 CAMSAP1Q5T5Y3 1602 aa23.64■■□□□ 1.38
RPS28-201ENST00000417088 LOC105371045A0A1W2PR82 267 aa23.64■■□□□ 1.37
RPS28-201ENST00000417088 CAMSAP2Q08AD1 1489 aa23.63■■□□□ 1.37
RPS28-201ENST00000417088 CCDC141Q6ZP82 1450 aa23.62■■□□□ 1.37
RPS28-201ENST00000417088 RSPH4AQ5TD94 716 aa23.62■■□□□ 1.37
RPS28-201ENST00000417088 NCKAP5LQ9HCH0 1330 aa23.6■■□□□ 1.37
RPS28-201ENST00000417088 VPS8Q8N3P4 1428 aa23.59■■□□□ 1.37
RPS28-201ENST00000417088 LTBP4Q8N2S1 1624 aa23.59■■□□□ 1.37
RPS28-201ENST00000417088 MYO3AQ8NEV4 1616 aa23.59■■□□□ 1.37
RPS28-201ENST00000417088 KIF3BO15066 747 aa23.58■■□□□ 1.37
RPS28-201ENST00000417088 ZNF142P52746 1687 aaPredicted RBP23.57■■□□□ 1.36
RPS28-201ENST00000417088 CEP170BQ9Y4F5 1589 aaPredicted RBP23.56■■□□□ 1.36
RPS28-201ENST00000417088 LRRC9Q6ZRR7 1453 aa23.56■■□□□ 1.36
RPS28-201ENST00000417088 PLA2R1Q13018 1463 aa23.55■■□□□ 1.36
RPS28-201ENST00000417088 ARHGEF5Q12774 1597 aa23.53■■□□□ 1.36
RPS28-201ENST00000417088 TSPY4P0CV99 314 aa23.53■■□□□ 1.36
RPS28-201ENST00000417088 TSPY10P0CW01 314 aa23.53■■□□□ 1.36
RPS28-201ENST00000417088 PKD2Q13563 968 aa23.53■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms