RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 LMOD2Q6P5Q4 547 aa15.29■□□□□ 0.04
UBR4-205ENST00000417040 ITPRIPQ8IWB1 547 aa15.29■□□□□ 0.04
UBR4-205ENST00000417040 WRNQ14191 1432 aaPredicted RBP eCLIP15.29■□□□□ 0.04
UBR4-205ENST00000417040 MS4A1P11836 297 aa15.29■□□□□ 0.04
UBR4-205ENST00000417040 FOXD4L5Q5VV16 416 aaPredicted RBP15.28■□□□□ 0.04
UBR4-205ENST00000417040 NOL8Q76FK4 1167 aaKnown RBP15.28■□□□□ 0.04
UBR4-205ENST00000417040 FOXD4L4Q8WXT5 416 aaPredicted RBP15.28■□□□□ 0.04
UBR4-205ENST00000417040 MCCP23508 829 aa15.28■□□□□ 0.04
UBR4-205ENST00000417040 NRDCO43847 1150 aa15.28■□□□□ 0.04
UBR4-205ENST00000417040 EEA1Q15075 1411 aa15.27■□□□□ 0.03
UBR4-205ENST00000417040 MORC1Q86VD1 984 aa15.27■□□□□ 0.03
UBR4-205ENST00000417040 TIMELESSQ9UNS1 1208 aa15.26■□□□□ 0.03
UBR4-205ENST00000417040 KIAA2012Q0VF49 1180 aa15.26■□□□□ 0.03
UBR4-205ENST00000417040 KANK4Q5T7N3 995 aaPredicted RBP15.26■□□□□ 0.03
UBR4-205ENST00000417040 HAP1P54257 671 aaPredicted RBP15.25■□□□□ 0.03
UBR4-205ENST00000417040 CCDC146Q8IYE0 955 aa15.25■□□□□ 0.03
UBR4-205ENST00000417040 VSIG10Q8N0Z9 540 aa15.25■□□□□ 0.03
UBR4-205ENST00000417040 SETD5Q9C0A6 1442 aa15.25■□□□□ 0.03
UBR4-205ENST00000417040 CHMP4BQ9H444 224 aaKnown RBP15.24■□□□□ 0.03
UBR4-205ENST00000417040 SOGA1O94964 1423 aa15.24■□□□□ 0.03
UBR4-205ENST00000417040 HSP90AA2PQ14568 343 aaPredicted RBP15.24■□□□□ 0.03
UBR4-205ENST00000417040 KTN1Q86UP2 1357 aaKnown RBP15.23■□□□□ 0.03
UBR4-205ENST00000417040 CLUAP1Q96AJ1 413 aa15.22■□□□□ 0.03
UBR4-205ENST00000417040 TNNT3P45378 269 aaPredicted RBP15.21■□□□□ 0.03
UBR4-205ENST00000417040 PLIN1O60240 522 aa15.21■□□□□ 0.02
UBR4-205ENST00000417040 NCBP3Q53F19 620 aaKnown RBP15.21■□□□□ 0.02
UBR4-205ENST00000417040 SRPK2P78362 688 aaKnown RBP15.2■□□□□ 0.02
UBR4-205ENST00000417040 RWDD1Q9H446 243 aaPredicted RBP15.19■□□□□ 0.02
UBR4-205ENST00000417040 GNL2Q13823 731 aaKnown RBP15.19■□□□□ 0.02
UBR4-205ENST00000417040 CLSTN1O94985 981 aa15.19■□□□□ 0.02
UBR4-205ENST00000417040 RAB3GAP2Q9H2M9 1393 aa15.18■□□□□ 0.02
UBR4-205ENST00000417040 KIF27Q86VH2 1401 aa15.17■□□□□ 0.02
UBR4-205ENST00000417040 HSP90B1P14625 803 aaKnown RBP15.17■□□□□ 0.02
UBR4-205ENST00000417040 STK26Q9P289 416 aa15.16■□□□□ 0.02
UBR4-205ENST00000417040 GOLGA2Q08379 1002 aa15.16■□□□□ 0.02
UBR4-205ENST00000417040 GSE1Q14687 1217 aa15.16■□□□□ 0.02
UBR4-205ENST00000417040 NPHP1O15259 732 aa15.16■□□□□ 0.02
UBR4-205ENST00000417040 FOXD4L6Q3SYB3 417 aaPredicted RBP15.16■□□□□ 0.02
UBR4-205ENST00000417040 FOXD4L3Q6VB84 417 aaPredicted RBP15.16■□□□□ 0.02
UBR4-205ENST00000417040 PTMSP20962 102 aa15.16■□□□□ 0.02
UBR4-205ENST00000417040 KIAA1211Q6ZU35 1233 aa15.16■□□□□ 0.02
UBR4-205ENST00000417040 CALD1Q05682 793 aaKnown RBP15.15■□□□□ 0.02
UBR4-205ENST00000417040 EIF4G1Q04637 1599 aaKnown RBP15.15■□□□□ 0.02
UBR4-205ENST00000417040 U2AF1L5P0DN76 240 aaPredicted RBP15.15■□□□□ 0.02
UBR4-205ENST00000417040 U2AF1Q01081 240 aaKnown RBP eCLIP15.15■□□□□ 0.027e-8■■■□□ 18.6
UBR4-205ENST00000417040 PKD2Q13563 968 aa15.15■□□□□ 0.02
UBR4-205ENST00000417040 ROCK2O75116 1388 aaKnown RBP15.14■□□□□ 0.01
UBR4-205ENST00000417040 PDE4AP27815 886 aa15.14■□□□□ 0.01
UBR4-205ENST00000417040 TRIM6-TRIM34B2RNG4 842 aa15.13■□□□□ 0.01
UBR4-205ENST00000417040 PMFBP1Q8TBY8 1022 aa15.13■□□□□ 0.01
UBR4-205ENST00000417040 RSPH6AQ9H0K4 717 aa15.13■□□□□ 0.01
UBR4-205ENST00000417040 EXOC6Q8TAG9 804 aa15.13■□□□□ 0.01
UBR4-205ENST00000417040 SMC4Q9NTJ3 1288 aa15.12■□□□□ 0.01
UBR4-205ENST00000417040 PDE4CQ08493 712 aa15.11■□□□□ 0.01
UBR4-205ENST00000417040 IPO8O15397 1037 aaKnown RBP15.11■□□□□ 0.01
UBR4-205ENST00000417040 SYAP1Q96A49 352 aaPredicted RBP15.11■□□□□ 0.01
UBR4-205ENST00000417040 CREBRFQ8IUR6 639 aa15.11■□□□□ 0.01
UBR4-205ENST00000417040 ISY1Q9ULR0 285 aaKnown RBP15.11■□□□□ 0.01
UBR4-205ENST00000417040 RTF1Q92541 710 aaKnown RBP15.1■□□□□ 0.01
UBR4-205ENST00000417040 RALBP1Q15311 655 aa15.1■□□□□ 0.01
UBR4-205ENST00000417040 ARHGAP35Q9NRY4 1499 aa15.09■□□□□ 0.01
UBR4-205ENST00000417040 ABCC8Q09428 1581 aa15.09■□□□□ 0.01
UBR4-205ENST00000417040 NOC3LQ8WTT2 800 aaKnown RBP15.09■□□□□ 0.01
UBR4-205ENST00000417040 MPHOSPH9Q99550 1183 aa15.09■□□□□ 0.01
UBR4-205ENST00000417040 RRP7AQ9Y3A4 280 aaKnown RBP15.09■□□□□ 0.01
UBR4-205ENST00000417040 CRBNQ96SW2 442 aa15.08■□□□□ 0
UBR4-205ENST00000417040 RB1CC1Q8TDY2 1594 aa15.07■□□□□ 0
UBR4-205ENST00000417040 BCL2L13Q9BXK5 485 aa15.07■□□□□ 0
UBR4-205ENST00000417040 BCL11BQ9C0K0 894 aaPredicted RBP15.06■□□□□ 0
UBR4-205ENST00000417040 SLC4A10Q6U841 1118 aa15.06■□□□□ 0
UBR4-205ENST00000417040 CFAP44Q96MT7 982 aa15.05■□□□□ -0
UBR4-205ENST00000417040 ANO8Q9HCE9 1232 aaPredicted RBP15.05■□□□□ -0
UBR4-205ENST00000417040 CENPJQ9HC77 1338 aaPredicted RBP15.04■□□□□ -0
UBR4-205ENST00000417040 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.04■□□□□ -0
UBR4-205ENST00000417040 VPS8Q8N3P4 1428 aa15.04■□□□□ -0
UBR4-205ENST00000417040 FAM161AQ3B820 660 aa15.03■□□□□ -0
UBR4-205ENST00000417040 ZNF330Q9Y3S2 320 aaPredicted RBP15.03■□□□□ -0
UBR4-205ENST00000417040 MLECQ14165 292 aa15.03■□□□□ -0
UBR4-205ENST00000417040 DDX49Q9Y6V7 483 aaKnown RBP15.03■□□□□ -0
UBR4-205ENST00000417040 L3MBTL2Q969R5 705 aa15.03■□□□□ -0
UBR4-205ENST00000417040 DDX11L8A8MPP1 907 aa15.03■□□□□ -0
UBR4-205ENST00000417040 FAM13BQ9NYF5 915 aa15.03■□□□□ -0
UBR4-205ENST00000417040 TPM4P67936 248 aa15.02□□□□□ -0.01
UBR4-205ENST00000417040 USP35Q9P2H5 1018 aa15.02□□□□□ -0.01
UBR4-205ENST00000417040 NUTM2DQ5VT03 806 aaPredicted RBP15.02□□□□□ -0.01
UBR4-205ENST00000417040 FHAD1B1AJZ9 1412 aa15.01□□□□□ -0.01
UBR4-205ENST00000417040 RRP1P56182 461 aaKnown RBP15.01□□□□□ -0.01
UBR4-205ENST00000417040 ZNF771Q7L3S4 317 aaPredicted RBP15.01□□□□□ -0.01
UBR4-205ENST00000417040 GOLGA6L1Q8N7Z2 621 aa15.01□□□□□ -0.01
UBR4-205ENST00000417040 ZNF592Q92610 1267 aa15.01□□□□□ -0.01
UBR4-205ENST00000417040 FANCIQ9NVI1 1328 aa15□□□□□ -0.01
UBR4-205ENST00000417040 CHMP3Q9Y3E7 222 aa15□□□□□ -0.01
UBR4-205ENST00000417040 CCDC9Q9Y3X0 531 aaKnown RBP14.99□□□□□ -0.01
UBR4-205ENST00000417040 CCAR2Q8N163 923 aaKnown RBP14.98□□□□□ -0.01
UBR4-205ENST00000417040 A0A0U1RQG5 324 aaPredicted RBP14.98□□□□□ -0.01
UBR4-205ENST00000417040 HDGFL2Q7Z4V5 671 aaPredicted RBP14.98□□□□□ -0.01
UBR4-205ENST00000417040 PAK3O75914 559 aaPredicted RBP14.98□□□□□ -0.01
UBR4-205ENST00000417040 CENPQQ7L2Z9 268 aaPredicted RBP14.98□□□□□ -0.01
UBR4-205ENST00000417040 HTATSF1O43719 755 aaKnown RBP14.98□□□□□ -0.01
UBR4-205ENST00000417040 ANKRD45Q5TZF3 282 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms