RNA–Protein interactions for RNA: ENST00000411819.1

MSH6-202, Transcript of mutS homolog 6, humanhuman

TSL 4

Gene MSH6, Length 548 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-202ENST00000411819 SCAPERQ9BY12 1400 aa36.29■■■■□ 3.4
MSH6-202ENST00000411819 ZFYVE16Q7Z3T8 1539 aa36.28■■■■□ 3.4
MSH6-202ENST00000411819 POGZQ7Z3K3 1410 aa36.26■■■■□ 3.4
MSH6-202ENST00000411819 ARHGAP5Q13017 1502 aa36.25■■■■□ 3.39
MSH6-202ENST00000411819 EFCAB2Q5VUJ9 269 aa36.25■■■■□ 3.39
MSH6-202ENST00000411819 FYCO1Q9BQS8 1478 aa36.24■■■■□ 3.39
MSH6-202ENST00000411819 MADDQ8WXG6 1647 aa36.23■■■■□ 3.39
MSH6-202ENST00000411819 YEATS2Q9ULM3 1422 aa36.22■■■■□ 3.39
MSH6-202ENST00000411819 PTPRMP28827 1452 aa36.21■■■■□ 3.39
MSH6-202ENST00000411819 MAGI2Q86UL8 1455 aa36.21■■■■□ 3.39
MSH6-202ENST00000411819 CDC42BPBQ9Y5S2 1711 aa36.15■■■■□ 3.38
MSH6-202ENST00000411819 PREX2Q70Z35 1606 aa36.14■■■■□ 3.38
MSH6-202ENST00000411819 SIGLEC1Q9BZZ2 1709 aa36.14■■■■□ 3.38
MSH6-202ENST00000411819 RIMS1Q86UR5 1692 aaKnown RBP36.13■■■■□ 3.37
MSH6-202ENST00000411819 ZNF518AQ6AHZ1 1483 aa36.1■■■■□ 3.37
MSH6-202ENST00000411819 KDM5CP41229 1560 aa36.04■■■■□ 3.36
MSH6-202ENST00000411819 CDC42BPAQ5VT25 1732 aa36.04■■■■□ 3.36
MSH6-202ENST00000411819 ATP10AO60312 1499 aa36.02■■■■□ 3.36
MSH6-202ENST00000411819 C9orf84Q5VXU9 1444 aa36.01■■■■□ 3.36
MSH6-202ENST00000411819 ABCC1P33527 1531 aa36■■■■□ 3.35
MSH6-202ENST00000411819 MLECQ14165 292 aa36■■■■□ 3.35
MSH6-202ENST00000411819 AFAP1Q8N556 730 aa35.99■■■■□ 3.35
MSH6-202ENST00000411819 MYT1LQ9UL68 1186 aa35.99■■■■□ 3.35
MSH6-202ENST00000411819 ITSN2Q9NZM3 1697 aa35.98■■■■□ 3.35
MSH6-202ENST00000411819 FER1L4A9Z1Z3 1794 aa35.98■■■■□ 3.35
MSH6-202ENST00000411819 CEP162Q5TB80 1403 aa35.95■■■■□ 3.35
MSH6-202ENST00000411819 PLPPR3Q6T4P5 718 aa35.93■■■■□ 3.34
MSH6-202ENST00000411819 DIP2CQ9Y2E4 1556 aa35.92■■■■□ 3.34
MSH6-202ENST00000411819 ARHGEF12Q9NZN5 1544 aa35.92■■■■□ 3.34
MSH6-202ENST00000411819 TRAPPC8Q9Y2L5 1435 aa35.91■■■■□ 3.34
MSH6-202ENST00000411819 ABCA6Q8N139 1617 aa35.89■■■■□ 3.34
MSH6-202ENST00000411819 MTUS2Q5JR59 1369 aa35.88■■■■□ 3.33
MSH6-202ENST00000411819 ZNF777Q9ULD5 760 aaPredicted RBP35.87■■■■□ 3.33
MSH6-202ENST00000411819 MLH3Q9UHC1 1453 aa35.86■■■■□ 3.33
MSH6-202ENST00000411819 SAMD9LQ8IVG5 1584 aa35.85■■■■□ 3.33
MSH6-202ENST00000411819 GPATCH8Q9UKJ3 1502 aaKnown RBP35.85■■■■□ 3.33
MSH6-202ENST00000411819 LMTK3Q96Q04 1460 aa35.84■■■■□ 3.33
MSH6-202ENST00000411819 SYCP2Q9BX26 1530 aa35.82■■■■□ 3.32
MSH6-202ENST00000411819 REREQ9P2R6 1566 aa35.81■■■■□ 3.32
MSH6-202ENST00000411819 CCNB3Q8WWL7 1395 aa35.8■■■■□ 3.32
MSH6-202ENST00000411819 EHBP1L1Q8N3D4 1523 aa35.79■■■■□ 3.32
MSH6-202ENST00000411819 KIDINS220Q9ULH0 1771 aa35.78■■■■□ 3.32
MSH6-202ENST00000411819 CFDP1Q9UEE9 299 aaPredicted RBP35.74■■■■□ 3.31
MSH6-202ENST00000411819 TIAM1Q13009 1591 aa35.72■■■■□ 3.31
MSH6-202ENST00000411819 PLEKHH2Q8IVE3 1493 aa35.7■■■■□ 3.31
MSH6-202ENST00000411819 HNRNPMP52272 730 aaKnown RBP eCLIP35.69■■■■□ 3.3
MSH6-202ENST00000411819 AGLP35573 1532 aa35.67■■■■□ 3.3
MSH6-202ENST00000411819 ILDR1Q86SU0 546 aaPredicted RBP35.67■■■■□ 3.3
MSH6-202ENST00000411819 LOC105371045A0A1W2PR82 267 aa35.65■■■■□ 3.3
MSH6-202ENST00000411819 KIAA1107Q9UPP5 1409 aa35.65■■■■□ 3.3
MSH6-202ENST00000411819 SPAG9O60271 1321 aaKnown RBP35.64■■■■□ 3.3
MSH6-202ENST00000411819 HSPA2P54652 639 aa35.64■■■■□ 3.3
MSH6-202ENST00000411819 ATP7AQ04656 1500 aa35.62■■■■□ 3.29
MSH6-202ENST00000411819 CEBPAP49715 358 aaPredicted RBP35.62■■■■□ 3.29
MSH6-202ENST00000411819 PREX1Q8TCU6 1659 aa35.62■■■■□ 3.29
MSH6-202ENST00000411819 INO80Q9ULG1 1556 aaPredicted RBP35.6■■■■□ 3.29
MSH6-202ENST00000411819 SUPT6HQ7KZ85 1726 aaKnown RBP35.6■■■■□ 3.29
MSH6-202ENST00000411819 ESF1Q9H501 851 aaKnown RBP35.57■■■■□ 3.28
MSH6-202ENST00000411819 VPS8Q8N3P4 1428 aa35.56■■■■□ 3.28
MSH6-202ENST00000411819 C3P01024 1663 aa35.55■■■■□ 3.28
MSH6-202ENST00000411819 ZNF644Q9H582 1327 aaPredicted RBP35.54■■■■□ 3.28
MSH6-202ENST00000411819 NCOA2Q15596 1464 aa35.54■■■■□ 3.28
MSH6-202ENST00000411819 A2MP01023 1474 aa35.48■■■■□ 3.27
MSH6-202ENST00000411819 PLXNC1O60486 1568 aa35.47■■■■□ 3.27
MSH6-202ENST00000411819 CNTLNQ9NXG0 1405 aa35.47■■■■□ 3.27
MSH6-202ENST00000411819 UHRF1BP1Q6BDS2 1440 aa35.46■■■■□ 3.27
MSH6-202ENST00000411819 MBD5Q9P267 1494 aa35.45■■■■□ 3.27
MSH6-202ENST00000411819 ADGBQ8N7X0 1667 aa35.45■■■■□ 3.27
MSH6-202ENST00000411819 SETD1BQ9UPS6 1966 aaKnown RBP35.44■■■■□ 3.26
MSH6-202ENST00000411819 CAMSAP2Q08AD1 1489 aa35.43■■■■□ 3.26
MSH6-202ENST00000411819 LRRC9Q6ZRR7 1453 aa35.41■■■■□ 3.26
MSH6-202ENST00000411819 MROH2AA6NES4 1674 aa35.4■■■■□ 3.26
MSH6-202ENST00000411819 CCDC141Q6ZP82 1450 aa35.37■■■■□ 3.25
MSH6-202ENST00000411819 CLTCQ00610 1675 aaKnown RBP35.36■■■■□ 3.25
MSH6-202ENST00000411819 RTEL1-TNFRSF6BF6WH68 1400 aa35.34■■■■□ 3.25
MSH6-202ENST00000411819 GGT6Q6P531 493 aa35.31■■■■□ 3.24
MSH6-202ENST00000411819 MAP3K1Q13233 1512 aa35.3■■■■□ 3.24
MSH6-202ENST00000411819 ZMYM3Q14202 1370 aa35.27■■■■□ 3.24
MSH6-202ENST00000411819 FBXO41Q8TF61 875 aa35.27■■■■□ 3.24
MSH6-202ENST00000411819 STRCQ7RTU9 1775 aa35.27■■■■□ 3.24
MSH6-202ENST00000411819 ARHGEF5Q12774 1597 aa35.26■■■■□ 3.24
MSH6-202ENST00000411819 NPATQ14207 1427 aa35.24■■■■□ 3.23
MSH6-202ENST00000411819 KANK4Q5T7N3 995 aaPredicted RBP35.24■■■■□ 3.23
MSH6-202ENST00000411819 RSPH4AQ5TD94 716 aa35.23■■■■□ 3.23
MSH6-202ENST00000411819 DHX29Q7Z478 1369 aaKnown RBP35.23■■■■□ 3.23
MSH6-202ENST00000411819 MYOM3Q5VTT5 1437 aa35.16■■■■□ 3.22
MSH6-202ENST00000411819 DMRT2Q9Y5R5 561 aa35.16■■■■□ 3.22
MSH6-202ENST00000411819 MYO3AQ8NEV4 1616 aa35.15■■■■□ 3.22
MSH6-202ENST00000411819 TSPY4P0CV99 314 aa35.15■■■■□ 3.22
MSH6-202ENST00000411819 TSPY10P0CW01 314 aa35.15■■■■□ 3.22
MSH6-202ENST00000411819 PPP6R1Q9UPN7 881 aa35.14■■■■□ 3.22
MSH6-202ENST00000411819 KIF3BO15066 747 aa35.13■■■■□ 3.21
MSH6-202ENST00000411819 APLP2Q06481 763 aa35.13■■■■□ 3.21
MSH6-202ENST00000411819 PTPRKQ15262 1439 aa35.12■■■■□ 3.21
MSH6-202ENST00000411819 MIA2Q96PC5 1412 aa35.11■■■■□ 3.21
MSH6-202ENST00000411819 ZNF142P52746 1687 aaPredicted RBP35.1■■■■□ 3.21
MSH6-202ENST00000411819 CAMSAP1Q5T5Y3 1602 aa35.09■■■■□ 3.21
MSH6-202ENST00000411819 MAST1Q9Y2H9 1570 aa35.08■■■■□ 3.21
MSH6-202ENST00000411819 NCOA1Q15788 1441 aa35.08■■■■□ 3.21
MSH6-202ENST00000411819 KDM5DQ9BY66 1539 aa35.07■■■■□ 3.21
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms