RNA–Protein interactions for RNA: ENST00000411553.3

HCG11-201, Transcript of HLA complex group 11, humanhuman

BASIC

Gene HCG11, Length 5,696 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCG11-201ENST00000411553 CUX2O14529 1486 aa23.4■■□□□ 1.34
HCG11-201ENST00000411553 B4GALNT3Q6L9W6 998 aa23.39■■□□□ 1.34
HCG11-201ENST00000411553 ISY1Q9ULR0 285 aaKnown RBP23.39■■□□□ 1.34
HCG11-201ENST00000411553 TIMELESSQ9UNS1 1208 aa23.39■■□□□ 1.34
HCG11-201ENST00000411553 NAP1L5Q96NT1 182 aaPredicted RBP23.38■■□□□ 1.33
HCG11-201ENST00000411553 CLSTN1O94985 981 aa23.36■■□□□ 1.33
HCG11-201ENST00000411553 PAK3O75914 559 aaPredicted RBP23.36■■□□□ 1.33
HCG11-201ENST00000411553 IPO8O15397 1037 aaKnown RBP23.35■■□□□ 1.33
HCG11-201ENST00000411553 PKD2Q13563 968 aa23.35■■□□□ 1.33
HCG11-201ENST00000411553 CSB-PGBD3P0DP91 1061 aa23.34■■□□□ 1.33
HCG11-201ENST00000411553 KTN1Q86UP2 1357 aaKnown RBP23.34■■□□□ 1.33
HCG11-201ENST00000411553 CALD1Q05682 793 aaKnown RBP23.32■■□□□ 1.32
HCG11-201ENST00000411553 BAZ1AQ9NRL2 1556 aaPredicted RBP23.32■■□□□ 1.32
HCG11-201ENST00000411553 HSPA5P11021 654 aaKnown RBP23.31■■□□□ 1.32
HCG11-201ENST00000411553 GNL2Q13823 731 aaKnown RBP23.31■■□□□ 1.32
HCG11-201ENST00000411553 KIAA1211Q6ZU35 1233 aa23.3■■□□□ 1.32
HCG11-201ENST00000411553 CARMIL2Q6F5E8 1435 aa23.3■■□□□ 1.32
HCG11-201ENST00000411553 ARHGAP35Q9NRY4 1499 aa23.3■■□□□ 1.32
HCG11-201ENST00000411553 APBB1O00213 710 aa23.29■■□□□ 1.32
HCG11-201ENST00000411553 SETD5Q9C0A6 1442 aa23.29■■□□□ 1.32
HCG11-201ENST00000411553 ZNF330Q9Y3S2 320 aaPredicted RBP23.28■■□□□ 1.32
HCG11-201ENST00000411553 CCER2I3L3R5 266 aa23.28■■□□□ 1.32
HCG11-201ENST00000411553 U2AF1L5P0DN76 240 aaPredicted RBP23.27■■□□□ 1.32
HCG11-201ENST00000411553 U2AF1Q01081 240 aaKnown RBP eCLIP23.27■■□□□ 1.32
HCG11-201ENST00000411553 CHAF1AQ13111 956 aaPredicted RBP23.27■■□□□ 1.32
HCG11-201ENST00000411553 SPRYD3Q8NCJ5 442 aa23.25■■□□□ 1.31
HCG11-201ENST00000411553 DRC7Q8IY82 874 aa23.25■■□□□ 1.31
HCG11-201ENST00000411553 ROCK2O75116 1388 aaKnown RBP23.24■■□□□ 1.31
HCG11-201ENST00000411553 EFCAB2Q5VUJ9 269 aa23.23■■□□□ 1.31
HCG11-201ENST00000411553 CHMP4AQ9BY43 222 aa23.23■■□□□ 1.31
HCG11-201ENST00000411553 FOXD1Q16676 465 aa23.21■■□□□ 1.31
HCG11-201ENST00000411553 TMX4Q9H1E5 349 aaPredicted RBP23.21■■□□□ 1.31
HCG11-201ENST00000411553 ITPRIPQ8IWB1 547 aa23.2■■□□□ 1.31
HCG11-201ENST00000411553 NCBP3Q53F19 620 aaKnown RBP23.19■■□□□ 1.3
HCG11-201ENST00000411553 L1TD1Q5T7N2 865 aaKnown RBP23.19■■□□□ 1.3
HCG11-201ENST00000411553 MSNP26038 577 aaKnown RBP23.19■■□□□ 1.3
HCG11-201ENST00000411553 RWDD1Q9H446 243 aaPredicted RBP23.19■■□□□ 1.3
HCG11-201ENST00000411553 RTN4Q9NQC3 1192 aaKnown RBP23.19■■□□□ 1.3
HCG11-201ENST00000411553 NUP155O75694 1391 aa23.18■■□□□ 1.3
HCG11-201ENST00000411553 SPAG9O60271 1321 aaKnown RBP23.18■■□□□ 1.3
HCG11-201ENST00000411553 RALBP1Q15311 655 aa23.18■■□□□ 1.3
HCG11-201ENST00000411553 STK31Q9BXU1 1019 aa23.17■■□□□ 1.3
HCG11-201ENST00000411553 EIF3AQ14152 1382 aaKnown RBP23.17■■□□□ 1.3
HCG11-201ENST00000411553 SOGA1O94964 1423 aa23.17■■□□□ 1.3
HCG11-201ENST00000411553 CCDC9Q9Y3X0 531 aaKnown RBP23.16■■□□□ 1.3
HCG11-201ENST00000411553 ANKRD30AQ9BXX3 1397 aa23.15■■□□□ 1.3
HCG11-201ENST00000411553 GORABQ5T7V8 394 aa23.15■■□□□ 1.3
HCG11-201ENST00000411553 MPHOSPH9Q99550 1183 aa23.14■■□□□ 1.29
HCG11-201ENST00000411553 RCAN3Q9UKA8 241 aa23.13■■□□□ 1.29
HCG11-201ENST00000411553 TERF2IPQ9NYB0 399 aa23.12■■□□□ 1.29
HCG11-201ENST00000411553 HTATSF1O43719 755 aaKnown RBP23.12■■□□□ 1.29
HCG11-201ENST00000411553 EID1Q9Y6B2 187 aa23.12■■□□□ 1.29
HCG11-201ENST00000411553 HDAC5Q9UQL6 1122 aa23.11■■□□□ 1.29
HCG11-201ENST00000411553 CHMP3Q9Y3E7 222 aa23.11■■□□□ 1.29
HCG11-201ENST00000411553 TAF7LQ5H9L4 462 aa23.11■■□□□ 1.29
HCG11-201ENST00000411553 KIF3BO15066 747 aa23.11■■□□□ 1.29
HCG11-201ENST00000411553 KIAA2012Q0VF49 1180 aa23.1■■□□□ 1.29
HCG11-201ENST00000411553 GBP4Q96PP9 640 aa23.1■■□□□ 1.29
HCG11-201ENST00000411553 VPS8Q8N3P4 1428 aa23.1■■□□□ 1.29
HCG11-201ENST00000411553 GPATCH3Q96I76 525 aa23.1■■□□□ 1.29
HCG11-201ENST00000411553 PTMSP20962 102 aa23.09■■□□□ 1.29
HCG11-201ENST00000411553 PDS5BQ9NTI5 1447 aa23.09■■□□□ 1.29
HCG11-201ENST00000411553 FMN1Q68DA7 1419 aa23.08■■□□□ 1.28
HCG11-201ENST00000411553 CECR2Q9BXF3 1484 aa23.07■■□□□ 1.28
HCG11-201ENST00000411553 NGDNQ8NEJ9 315 aaKnown RBP23.06■■□□□ 1.28
HCG11-201ENST00000411553 PMFBP1Q8TBY8 1022 aa23.06■■□□□ 1.28
HCG11-201ENST00000411553 HMMRO75330 724 aa23.06■■□□□ 1.28
HCG11-201ENST00000411553 KANK4Q5T7N3 995 aaPredicted RBP23.06■■□□□ 1.28
HCG11-201ENST00000411553 SMC4Q9NTJ3 1288 aa23.06■■□□□ 1.28
HCG11-201ENST00000411553 TRIM6-TRIM34B2RNG4 842 aa23.02■■□□□ 1.28
HCG11-201ENST00000411553 TDRD9Q8NDG6 1382 aaKnown RBP23.01■■□□□ 1.27
HCG11-201ENST00000411553 AMPHP49418 695 aa23.01■■□□□ 1.27
HCG11-201ENST00000411553 WASHC2CQ9Y4E1 1318 aa23.01■■□□□ 1.27
HCG11-201ENST00000411553 G3V3G9 751 aa23.01■■□□□ 1.27
HCG11-201ENST00000411553 DCAF8Q5TAQ9 597 aa23.01■■□□□ 1.27
HCG11-201ENST00000411553 LMOD3Q0VAK6 560 aa23.01■■□□□ 1.27
HCG11-201ENST00000411553 HSP90B1P14625 803 aaKnown RBP23■■□□□ 1.27
HCG11-201ENST00000411553 RAB3GAP2Q9H2M9 1393 aa23■■□□□ 1.27
HCG11-201ENST00000411553 SLC4A10Q6U841 1118 aa23■■□□□ 1.27
HCG11-201ENST00000411553 SYAP1Q96A49 352 aaPredicted RBP23■■□□□ 1.27
HCG11-201ENST00000411553 HNRNPMP52272 730 aaKnown RBP eCLIP22.99■■□□□ 1.27
HCG11-201ENST00000411553 CCDC34Q96HJ3 373 aa22.99■■□□□ 1.27
HCG11-201ENST00000411553 NUTM2DQ5VT03 806 aaPredicted RBP22.99■■□□□ 1.27
HCG11-201ENST00000411553 TCERG1O14776 1098 aaKnown RBP22.98■■□□□ 1.27
HCG11-201ENST00000411553 TPM4P67936 248 aa22.98■■□□□ 1.27
HCG11-201ENST00000411553 MFAP1P55081 439 aaKnown RBP22.96■■□□□ 1.27
HCG11-201ENST00000411553 RSPH4AQ5TD94 716 aa22.96■■□□□ 1.27
HCG11-201ENST00000411553 SLKQ9H2G2 1235 aaPredicted RBP22.96■■□□□ 1.27
HCG11-201ENST00000411553 LTV1Q96GA3 475 aaPredicted RBP22.95■■□□□ 1.26
HCG11-201ENST00000411553 CCDC146Q8IYE0 955 aa22.94■■□□□ 1.26
HCG11-201ENST00000411553 NOC3LQ8WTT2 800 aaKnown RBP22.93■■□□□ 1.26
HCG11-201ENST00000411553 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.93■■□□□ 1.26
HCG11-201ENST00000411553 GTF2E1P29083 439 aaPredicted RBP22.93■■□□□ 1.26
HCG11-201ENST00000411553 RBM19Q9Y4C8 960 aaKnown RBP22.92■■□□□ 1.26
HCG11-201ENST00000411553 RASSF8Q8NHQ8 419 aa22.92■■□□□ 1.26
HCG11-201ENST00000411553 GZF1Q9H116 711 aaPredicted RBP22.92■■□□□ 1.26
HCG11-201ENST00000411553 CENPJQ9HC77 1338 aaPredicted RBP22.92■■□□□ 1.26
HCG11-201ENST00000411553 CLUAP1Q96AJ1 413 aa22.91■■□□□ 1.26
HCG11-201ENST00000411553 CCDC88BA6NC98 1476 aa22.91■■□□□ 1.26
HCG11-201ENST00000411553 FRAT2O75474 233 aaPredicted RBP22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms