RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 EFCAB2Q5VUJ9 269 aa30.68■■■□□ 2.5
SF3A1-202ENST00000411423 ZMYM4Q5VZL5 1548 aa30.68■■■□□ 2.5
SF3A1-202ENST00000411423 POGZQ7Z3K3 1410 aa30.67■■■□□ 2.5
SF3A1-202ENST00000411423 ARHGEF40Q8TER5 1519 aa30.67■■■□□ 2.5
SF3A1-202ENST00000411423 PREX2Q70Z35 1606 aa30.65■■■□□ 2.5
SF3A1-202ENST00000411423 YEATS2Q9ULM3 1422 aa30.64■■■□□ 2.49
SF3A1-202ENST00000411423 CDC42BPAQ5VT25 1732 aa30.61■■■□□ 2.49
SF3A1-202ENST00000411423 SIGLEC1Q9BZZ2 1709 aa30.59■■■□□ 2.49
SF3A1-202ENST00000411423 ZFYVE16Q7Z3T8 1539 aa30.57■■■□□ 2.49
SF3A1-202ENST00000411423 ARHGEF12Q9NZN5 1544 aa30.57■■■□□ 2.48
SF3A1-202ENST00000411423 GPATCH8Q9UKJ3 1502 aaKnown RBP30.54■■■□□ 2.48
SF3A1-202ENST00000411423 MAGI2Q86UL8 1455 aa30.54■■■□□ 2.48
SF3A1-202ENST00000411423 ADAMTSL3P82987 1691 aa30.54■■■□□ 2.48
SF3A1-202ENST00000411423 ABCC1P33527 1531 aa30.53■■■□□ 2.48
SF3A1-202ENST00000411423 MTUS2Q5JR59 1369 aa30.53■■■□□ 2.48
SF3A1-202ENST00000411423 AFAP1Q8N556 730 aa30.52■■■□□ 2.48
SF3A1-202ENST00000411423 BCORL1Q5H9F3 1711 aa30.52■■■□□ 2.48
SF3A1-202ENST00000411423 KDM5CP41229 1560 aa30.51■■■□□ 2.47
SF3A1-202ENST00000411423 VPS8Q8N3P4 1428 aa30.5■■■□□ 2.47
SF3A1-202ENST00000411423 ZNF518AQ6AHZ1 1483 aa30.5■■■□□ 2.47
SF3A1-202ENST00000411423 TRAPPC8Q9Y2L5 1435 aa30.49■■■□□ 2.47
SF3A1-202ENST00000411423 ITSN2Q9NZM3 1697 aa30.49■■■□□ 2.47
SF3A1-202ENST00000411423 EHBP1L1Q8N3D4 1523 aa30.48■■■□□ 2.47
SF3A1-202ENST00000411423 SAMD9LQ8IVG5 1584 aa30.48■■■□□ 2.47
SF3A1-202ENST00000411423 ARID4BQ4LE39 1312 aaPredicted RBP30.47■■■□□ 2.47
SF3A1-202ENST00000411423 TIAM1Q13009 1591 aa30.44■■■□□ 2.46
SF3A1-202ENST00000411423 MADDQ8WXG6 1647 aa30.44■■■□□ 2.46
SF3A1-202ENST00000411423 ZNF777Q9ULD5 760 aaPredicted RBP30.42■■■□□ 2.46
SF3A1-202ENST00000411423 CCNB3Q8WWL7 1395 aa30.41■■■□□ 2.46
SF3A1-202ENST00000411423 HECW2Q9P2P5 1572 aa30.41■■■□□ 2.46
SF3A1-202ENST00000411423 ATP10AO60312 1499 aa30.4■■■□□ 2.46
SF3A1-202ENST00000411423 SYCP2Q9BX26 1530 aa30.39■■■□□ 2.46
SF3A1-202ENST00000411423 PTPRMP28827 1452 aa30.38■■■□□ 2.45
SF3A1-202ENST00000411423 DIP2CQ9Y2E4 1556 aa30.38■■■□□ 2.45
SF3A1-202ENST00000411423 C9orf84Q5VXU9 1444 aa30.38■■■□□ 2.45
SF3A1-202ENST00000411423 MLH3Q9UHC1 1453 aa30.38■■■□□ 2.45
SF3A1-202ENST00000411423 ABCA6Q8N139 1617 aa30.37■■■□□ 2.45
SF3A1-202ENST00000411423 CFDP1Q9UEE9 299 aaPredicted RBP30.36■■■□□ 2.45
SF3A1-202ENST00000411423 HNRNPMP52272 730 aaKnown RBP eCLIP30.34■■■□□ 2.45
SF3A1-202ENST00000411423 NCOA2Q15596 1464 aa30.33■■■□□ 2.45
SF3A1-202ENST00000411423 KIDINS220Q9ULH0 1771 aa30.33■■■□□ 2.45
SF3A1-202ENST00000411423 ZNF644Q9H582 1327 aaPredicted RBP30.32■■■□□ 2.44
SF3A1-202ENST00000411423 RIMS1Q86UR5 1692 aaKnown RBP30.32■■■□□ 2.44
SF3A1-202ENST00000411423 SUPT6HQ7KZ85 1726 aaKnown RBP30.3■■■□□ 2.44
SF3A1-202ENST00000411423 MLECQ14165 292 aa30.3■■■□□ 2.44
SF3A1-202ENST00000411423 LRRC9Q6ZRR7 1453 aa30.3■■■□□ 2.44
SF3A1-202ENST00000411423 KIAA1107Q9UPP5 1409 aa30.3■■■□□ 2.44
SF3A1-202ENST00000411423 KANK4Q5T7N3 995 aaPredicted RBP30.29■■■□□ 2.44
SF3A1-202ENST00000411423 MYT1LQ9UL68 1186 aa30.29■■■□□ 2.44
SF3A1-202ENST00000411423 REREQ9P2R6 1566 aa30.27■■■□□ 2.44
SF3A1-202ENST00000411423 MAP3K1Q13233 1512 aa30.25■■■□□ 2.43
SF3A1-202ENST00000411423 PLEKHH2Q8IVE3 1493 aa30.25■■■□□ 2.43
SF3A1-202ENST00000411423 MBD5Q9P267 1494 aa30.23■■■□□ 2.43
SF3A1-202ENST00000411423 FER1L4A9Z1Z3 1794 aa30.21■■■□□ 2.43
SF3A1-202ENST00000411423 SPAG9O60271 1321 aaKnown RBP30.2■■■□□ 2.42
SF3A1-202ENST00000411423 INO80Q9ULG1 1556 aaPredicted RBP30.2■■■□□ 2.42
SF3A1-202ENST00000411423 ATP7AQ04656 1500 aa30.17■■■□□ 2.42
SF3A1-202ENST00000411423 AGLP35573 1532 aa30.17■■■□□ 2.42
SF3A1-202ENST00000411423 CAMSAP2Q08AD1 1489 aa30.15■■■□□ 2.42
SF3A1-202ENST00000411423 PLPPR3Q6T4P5 718 aa30.13■■■□□ 2.41
SF3A1-202ENST00000411423 PLXNC1O60486 1568 aa30.07■■■□□ 2.4
SF3A1-202ENST00000411423 LMTK3Q96Q04 1460 aa30.06■■■□□ 2.4
SF3A1-202ENST00000411423 CEBPAP49715 358 aaPredicted RBP30.05■■■□□ 2.4
SF3A1-202ENST00000411423 A2MP01023 1474 aa30.05■■■□□ 2.4
SF3A1-202ENST00000411423 CCDC141Q6ZP82 1450 aa30.05■■■□□ 2.4
SF3A1-202ENST00000411423 MYOM3Q5VTT5 1437 aa30.02■■■□□ 2.4
SF3A1-202ENST00000411423 RTEL1-TNFRSF6BF6WH68 1400 aa30.01■■■□□ 2.39
SF3A1-202ENST00000411423 ARHGEF5Q12774 1597 aa30■■■□□ 2.39
SF3A1-202ENST00000411423 ADGBQ8N7X0 1667 aa29.98■■■□□ 2.39
SF3A1-202ENST00000411423 MIA2Q96PC5 1412 aa29.96■■■□□ 2.39
SF3A1-202ENST00000411423 APLP2Q06481 763 aa29.96■■■□□ 2.39
SF3A1-202ENST00000411423 C3P01024 1663 aa29.95■■■□□ 2.39
SF3A1-202ENST00000411423 RSPH4AQ5TD94 716 aa29.92■■■□□ 2.38
SF3A1-202ENST00000411423 DHX29Q7Z478 1369 aaKnown RBP29.9■■■□□ 2.38
SF3A1-202ENST00000411423 HSPA2P54652 639 aa29.9■■■□□ 2.38
SF3A1-202ENST00000411423 MAST1Q9Y2H9 1570 aa29.86■■■□□ 2.37
SF3A1-202ENST00000411423 GGT6Q6P531 493 aa29.86■■■□□ 2.37
SF3A1-202ENST00000411423 CNTLNQ9NXG0 1405 aa29.86■■■□□ 2.37
SF3A1-202ENST00000411423 PTPN23Q9H3S7 1636 aa29.85■■■□□ 2.37
SF3A1-202ENST00000411423 PREX1Q8TCU6 1659 aa29.85■■■□□ 2.37
SF3A1-202ENST00000411423 CLTCQ00610 1675 aaKnown RBP29.85■■■□□ 2.37
SF3A1-202ENST00000411423 ESF1Q9H501 851 aaKnown RBP29.84■■■□□ 2.37
SF3A1-202ENST00000411423 MROH2AA6NES4 1674 aa29.84■■■□□ 2.37
SF3A1-202ENST00000411423 TSPY4P0CV99 314 aa29.83■■■□□ 2.37
SF3A1-202ENST00000411423 TSPY10P0CW01 314 aa29.83■■■□□ 2.37
SF3A1-202ENST00000411423 FGD6Q6ZV73 1430 aa29.82■■■□□ 2.36
SF3A1-202ENST00000411423 ZMYM3Q14202 1370 aa29.81■■■□□ 2.36
SF3A1-202ENST00000411423 TCOF1Q13428 1488 aaKnown RBP29.8■■■□□ 2.36
SF3A1-202ENST00000411423 ABCC5O15440 1437 aa29.79■■■□□ 2.36
SF3A1-202ENST00000411423 KIF3BO15066 747 aa29.78■■■□□ 2.36
SF3A1-202ENST00000411423 CROCC2H7BZ55 1655 aa29.76■■■□□ 2.36
SF3A1-202ENST00000411423 UHRF1BP1Q6BDS2 1440 aa29.74■■■□□ 2.35
SF3A1-202ENST00000411423 SETD1BQ9UPS6 1966 aaKnown RBP29.73■■■□□ 2.35
SF3A1-202ENST00000411423 DAPK1P53355 1430 aa29.72■■■□□ 2.35
SF3A1-202ENST00000411423 DNMT1P26358 1616 aaKnown RBP29.72■■■□□ 2.35
SF3A1-202ENST00000411423 PTPRKQ15262 1439 aa29.71■■■□□ 2.35
SF3A1-202ENST00000411423 SHANK2Q9UPX8 1470 aa29.7■■■□□ 2.35
SF3A1-202ENST00000411423 PPP6R1Q9UPN7 881 aa29.7■■■□□ 2.35
SF3A1-202ENST00000411423 NPATQ14207 1427 aa29.7■■■□□ 2.34
SF3A1-202ENST00000411423 KDM5DQ9BY66 1539 aa29.66■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms