RNA–Protein interactions for RNA: ENST00000409958.6

VSX1-204, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,305 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-204ENST00000409958 PREX2Q70Z35 1606 aa32.87■■■□□ 2.85
VSX1-204ENST00000409958 CDC42BPBQ9Y5S2 1711 aa32.86■■■□□ 2.85
VSX1-204ENST00000409958 TIAM1Q13009 1591 aa32.86■■■□□ 2.85
VSX1-204ENST00000409958 SCAPERQ9BY12 1400 aa32.85■■■□□ 2.85
VSX1-204ENST00000409958 RICTORQ6R327 1708 aa32.84■■■□□ 2.85
VSX1-204ENST00000409958 CDC42BPAQ5VT25 1732 aa32.82■■■□□ 2.85
VSX1-204ENST00000409958 KDM4FA0A1W2PPD8 638 aa32.81■■■□□ 2.84
VSX1-204ENST00000409958 MAP3K1Q13233 1512 aa32.81■■■□□ 2.84
VSX1-204ENST00000409958 GPATCH8Q9UKJ3 1502 aaKnown RBP32.81■■■□□ 2.84
VSX1-204ENST00000409958 POGZQ7Z3K3 1410 aa32.79■■■□□ 2.84
VSX1-204ENST00000409958 CCNB3Q8WWL7 1395 aa32.78■■■□□ 2.84
VSX1-204ENST00000409958 ZMYM4Q5VZL5 1548 aa32.75■■■□□ 2.83
VSX1-204ENST00000409958 LRRC9Q6ZRR7 1453 aa32.73■■■□□ 2.83
VSX1-204ENST00000409958 CFDP1Q9UEE9 299 aaPredicted RBP32.71■■■□□ 2.83
VSX1-204ENST00000409958 MAGI2Q86UL8 1455 aa32.71■■■□□ 2.83
VSX1-204ENST00000409958 ABCC1P33527 1531 aa32.7■■■□□ 2.83
VSX1-204ENST00000409958 SUPT6HQ7KZ85 1726 aaKnown RBP32.7■■■□□ 2.83
VSX1-204ENST00000409958 ZNF518AQ6AHZ1 1483 aa32.7■■■□□ 2.82
VSX1-204ENST00000409958 NCOA2Q15596 1464 aa32.68■■■□□ 2.82
VSX1-204ENST00000409958 ARHGEF40Q8TER5 1519 aa32.67■■■□□ 2.82
VSX1-204ENST00000409958 APLP2Q06481 763 aa32.67■■■□□ 2.82
VSX1-204ENST00000409958 ZNF777Q9ULD5 760 aaPredicted RBP32.67■■■□□ 2.82
VSX1-204ENST00000409958 ARHGEF12Q9NZN5 1544 aa32.66■■■□□ 2.82
VSX1-204ENST00000409958 KANK4Q5T7N3 995 aaPredicted RBP32.65■■■□□ 2.82
VSX1-204ENST00000409958 AFAP1Q8N556 730 aa32.65■■■□□ 2.82
VSX1-204ENST00000409958 SAMD9LQ8IVG5 1584 aa32.65■■■□□ 2.82
VSX1-204ENST00000409958 ZFYVE16Q7Z3T8 1539 aa32.64■■■□□ 2.82
VSX1-204ENST00000409958 ITSN2Q9NZM3 1697 aa32.64■■■□□ 2.82
VSX1-204ENST00000409958 KDM5CP41229 1560 aa32.63■■■□□ 2.81
VSX1-204ENST00000409958 YEATS2Q9ULM3 1422 aa32.61■■■□□ 2.81
VSX1-204ENST00000409958 PLEKHH2Q8IVE3 1493 aa32.61■■■□□ 2.81
VSX1-204ENST00000409958 TRAPPC8Q9Y2L5 1435 aa32.61■■■□□ 2.81
VSX1-204ENST00000409958 KIAA1107Q9UPP5 1409 aa32.6■■■□□ 2.81
VSX1-204ENST00000409958 SYCP2Q9BX26 1530 aa32.57■■■□□ 2.8
VSX1-204ENST00000409958 MLH3Q9UHC1 1453 aa32.54■■■□□ 2.8
VSX1-204ENST00000409958 HNRNPMP52272 730 aaKnown RBP eCLIP32.53■■■□□ 2.8
VSX1-204ENST00000409958 HECW2Q9P2P5 1572 aa32.53■■■□□ 2.8
VSX1-204ENST00000409958 ZNF644Q9H582 1327 aaPredicted RBP32.51■■■□□ 2.79
VSX1-204ENST00000409958 ATP10AO60312 1499 aa32.51■■■□□ 2.79
VSX1-204ENST00000409958 ARID4BQ4LE39 1312 aaPredicted RBP32.5■■■□□ 2.79
VSX1-204ENST00000409958 MYT1LQ9UL68 1186 aa32.5■■■□□ 2.79
VSX1-204ENST00000409958 C9orf84Q5VXU9 1444 aa32.47■■■□□ 2.79
VSX1-204ENST00000409958 MBD5Q9P267 1494 aa32.44■■■□□ 2.78
VSX1-204ENST00000409958 SIGLEC1Q9BZZ2 1709 aa32.43■■■□□ 2.78
VSX1-204ENST00000409958 CAMSAP2Q08AD1 1489 aa32.43■■■□□ 2.78
VSX1-204ENST00000409958 DIP2CQ9Y2E4 1556 aa32.43■■■□□ 2.78
VSX1-204ENST00000409958 SPAG9O60271 1321 aaKnown RBP32.43■■■□□ 2.78
VSX1-204ENST00000409958 MYOM3Q5VTT5 1437 aa32.42■■■□□ 2.78
VSX1-204ENST00000409958 BCORL1Q5H9F3 1711 aa32.42■■■□□ 2.78
VSX1-204ENST00000409958 KIDINS220Q9ULH0 1771 aa32.41■■■□□ 2.78
VSX1-204ENST00000409958 MIA2Q96PC5 1412 aa32.4■■■□□ 2.78
VSX1-204ENST00000409958 ABCA6Q8N139 1617 aa32.4■■■□□ 2.78
VSX1-204ENST00000409958 ADAMTSL3P82987 1691 aa32.39■■■□□ 2.78
VSX1-204ENST00000409958 REREQ9P2R6 1566 aa32.37■■■□□ 2.77
VSX1-204ENST00000409958 RSPH4AQ5TD94 716 aa32.37■■■□□ 2.77
VSX1-204ENST00000409958 MADDQ8WXG6 1647 aa32.34■■■□□ 2.77
VSX1-204ENST00000409958 ATP7AQ04656 1500 aa32.34■■■□□ 2.77
VSX1-204ENST00000409958 INO80Q9ULG1 1556 aaPredicted RBP32.34■■■□□ 2.77
VSX1-204ENST00000409958 CCDC141Q6ZP82 1450 aa32.33■■■□□ 2.77
VSX1-204ENST00000409958 ARHGEF5Q12774 1597 aa32.3■■■□□ 2.76
VSX1-204ENST00000409958 RTEL1-TNFRSF6BF6WH68 1400 aa32.29■■■□□ 2.76
VSX1-204ENST00000409958 AGLP35573 1532 aa32.27■■■□□ 2.76
VSX1-204ENST00000409958 MLECQ14165 292 aa32.26■■■□□ 2.76
VSX1-204ENST00000409958 PTPRMP28827 1452 aa32.26■■■□□ 2.75
VSX1-204ENST00000409958 RIMS1Q86UR5 1692 aaKnown RBP32.23■■■□□ 2.75
VSX1-204ENST00000409958 FGD6Q6ZV73 1430 aa32.23■■■□□ 2.75
VSX1-204ENST00000409958 TSPY4P0CV99 314 aa32.21■■■□□ 2.75
VSX1-204ENST00000409958 TSPY10P0CW01 314 aa32.21■■■□□ 2.75
VSX1-204ENST00000409958 PTPN23Q9H3S7 1636 aa32.2■■■□□ 2.75
VSX1-204ENST00000409958 A2MP01023 1474 aa32.2■■■□□ 2.74
VSX1-204ENST00000409958 PLXNC1O60486 1568 aa32.17■■■□□ 2.74
VSX1-204ENST00000409958 ADGBQ8N7X0 1667 aa32.17■■■□□ 2.74
VSX1-204ENST00000409958 TCOF1Q13428 1488 aaKnown RBP32.17■■■□□ 2.74
VSX1-204ENST00000409958 FER1L4A9Z1Z3 1794 aa32.15■■■□□ 2.74
VSX1-204ENST00000409958 MAST1Q9Y2H9 1570 aa32.13■■■□□ 2.73
VSX1-204ENST00000409958 PLPPR3Q6T4P5 718 aa32.11■■■□□ 2.73
VSX1-204ENST00000409958 DHX29Q7Z478 1369 aaKnown RBP32.1■■■□□ 2.73
VSX1-204ENST00000409958 ABCC5O15440 1437 aa32.07■■■□□ 2.72
VSX1-204ENST00000409958 SHANK2Q9UPX8 1470 aa32.05■■■□□ 2.72
VSX1-204ENST00000409958 DAPK1P53355 1430 aa32.05■■■□□ 2.72
VSX1-204ENST00000409958 DNMT1P26358 1616 aaKnown RBP32.04■■■□□ 2.72
VSX1-204ENST00000409958 PPARGC1BQ86YN6 1023 aaKnown RBP32.03■■■□□ 2.72
VSX1-204ENST00000409958 ESF1Q9H501 851 aaKnown RBP32.02■■■□□ 2.72
VSX1-204ENST00000409958 CROCC2H7BZ55 1655 aa32.02■■■□□ 2.72
VSX1-204ENST00000409958 CNTLNQ9NXG0 1405 aa31.99■■■□□ 2.71
VSX1-204ENST00000409958 FAM50AQ14320 339 aaKnown RBP31.99■■■□□ 2.71
VSX1-204ENST00000409958 GGT6Q6P531 493 aa31.98■■■□□ 2.71
VSX1-204ENST00000409958 PPP6R1Q9UPN7 881 aa31.97■■■□□ 2.71
VSX1-204ENST00000409958 KIF3BO15066 747 aa31.96■■■□□ 2.71
VSX1-204ENST00000409958 CEBPAP49715 358 aaPredicted RBP31.92■■■□□ 2.7
VSX1-204ENST00000409958 DUOX2Q9NRD8 1548 aa31.91■■■□□ 2.7
VSX1-204ENST00000409958 KIF15Q9NS87 1388 aa31.9■■■□□ 2.7
VSX1-204ENST00000409958 LMTK3Q96Q04 1460 aa31.89■■■□□ 2.7
VSX1-204ENST00000409958 MROH2AA6NES4 1674 aa31.88■■■□□ 2.69
VSX1-204ENST00000409958 ANKRD30AQ9BXX3 1397 aa31.87■■■□□ 2.69
VSX1-204ENST00000409958 RRP7BPQ9NSQ0 103 aa31.87■■■□□ 2.69
VSX1-204ENST00000409958 CHIC2Q9UKJ5 165 aa31.87■■■□□ 2.69
VSX1-204ENST00000409958 C3P01024 1663 aa31.87■■■□□ 2.69
VSX1-204ENST00000409958 ZMYM3Q14202 1370 aa31.85■■■□□ 2.69
VSX1-204ENST00000409958 EIF2AK4Q9P2K8 1649 aaKnown RBP31.85■■■□□ 2.69
Retrieved 100 of 20,778 RNA–protein pairs in 6 ms