RNA–Protein interactions for RNA: ENST00000409417.5

PDLIM2-207, Transcript of PDZ and LIM domain 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM2, Length 1,487 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-207ENST00000409417 GPATCH8Q9UKJ3 1502 aaKnown RBP31.18■■■□□ 2.58
PDLIM2-207ENST00000409417 CCNB3Q8WWL7 1395 aa31.18■■■□□ 2.58
PDLIM2-207ENST00000409417 PREX2Q70Z35 1606 aa31.17■■■□□ 2.58
PDLIM2-207ENST00000409417 KANK4Q5T7N3 995 aaPredicted RBP31.17■■■□□ 2.58
PDLIM2-207ENST00000409417 DENND4BO75064 1496 aaPredicted RBP31.17■■■□□ 2.58
PDLIM2-207ENST00000409417 ADGRL1O94910 1474 aa31.16■■■□□ 2.58
PDLIM2-207ENST00000409417 CDC42BPBQ9Y5S2 1711 aa31.15■■■□□ 2.58
PDLIM2-207ENST00000409417 CDC42BPAQ5VT25 1732 aa31.14■■■□□ 2.58
PDLIM2-207ENST00000409417 SCAPERQ9BY12 1400 aa31.14■■■□□ 2.58
PDLIM2-207ENST00000409417 NCOA2Q15596 1464 aa31.12■■■□□ 2.57
PDLIM2-207ENST00000409417 CFDP1Q9UEE9 299 aaPredicted RBP31.11■■■□□ 2.57
PDLIM2-207ENST00000409417 SUPT6HQ7KZ85 1726 aaKnown RBP31.1■■■□□ 2.57
PDLIM2-207ENST00000409417 FRMPD1Q5SYB0 1578 aa31.08■■■□□ 2.57
PDLIM2-207ENST00000409417 POGZQ7Z3K3 1410 aa31.06■■■□□ 2.56
PDLIM2-207ENST00000409417 ZNF777Q9ULD5 760 aaPredicted RBP31.05■■■□□ 2.56
PDLIM2-207ENST00000409417 RICTORQ6R327 1708 aa31.03■■■□□ 2.56
PDLIM2-207ENST00000409417 ABCC1P33527 1531 aa31■■■□□ 2.55
PDLIM2-207ENST00000409417 ITSN2Q9NZM3 1697 aa30.99■■■□□ 2.55
PDLIM2-207ENST00000409417 ZNF518AQ6AHZ1 1483 aa30.98■■■□□ 2.55
PDLIM2-207ENST00000409417 ZMYM4Q5VZL5 1548 aa30.98■■■□□ 2.55
PDLIM2-207ENST00000409417 ARHGEF12Q9NZN5 1544 aa30.98■■■□□ 2.55
PDLIM2-207ENST00000409417 AFAP1Q8N556 730 aa30.97■■■□□ 2.55
PDLIM2-207ENST00000409417 SAMD9LQ8IVG5 1584 aa30.97■■■□□ 2.55
PDLIM2-207ENST00000409417 KIAA1107Q9UPP5 1409 aa30.97■■■□□ 2.55
PDLIM2-207ENST00000409417 PLEKHH2Q8IVE3 1493 aa30.96■■■□□ 2.55
PDLIM2-207ENST00000409417 MAGI2Q86UL8 1455 aa30.94■■■□□ 2.54
PDLIM2-207ENST00000409417 TRAPPC8Q9Y2L5 1435 aa30.94■■■□□ 2.54
PDLIM2-207ENST00000409417 ZNF644Q9H582 1327 aaPredicted RBP30.93■■■□□ 2.54
PDLIM2-207ENST00000409417 HNRNPMP52272 730 aaKnown RBP eCLIP30.91■■■□□ 2.54
PDLIM2-207ENST00000409417 KDM5CP41229 1560 aa30.9■■■□□ 2.54
PDLIM2-207ENST00000409417 MYOM3Q5VTT5 1437 aa30.9■■■□□ 2.54
PDLIM2-207ENST00000409417 SYCP2Q9BX26 1530 aa30.9■■■□□ 2.54
PDLIM2-207ENST00000409417 ZFYVE16Q7Z3T8 1539 aa30.87■■■□□ 2.53
PDLIM2-207ENST00000409417 ARHGEF40Q8TER5 1519 aa30.87■■■□□ 2.53
PDLIM2-207ENST00000409417 YEATS2Q9ULM3 1422 aa30.86■■■□□ 2.53
PDLIM2-207ENST00000409417 MIA2Q96PC5 1412 aa30.85■■■□□ 2.53
PDLIM2-207ENST00000409417 MLH3Q9UHC1 1453 aa30.84■■■□□ 2.53
PDLIM2-207ENST00000409417 CAMSAP2Q08AD1 1489 aa30.82■■■□□ 2.52
PDLIM2-207ENST00000409417 MBD5Q9P267 1494 aa30.82■■■□□ 2.52
PDLIM2-207ENST00000409417 MYT1LQ9UL68 1186 aa30.8■■■□□ 2.52
PDLIM2-207ENST00000409417 HECW2Q9P2P5 1572 aa30.8■■■□□ 2.52
PDLIM2-207ENST00000409417 RSPH4AQ5TD94 716 aa30.78■■■□□ 2.52
PDLIM2-207ENST00000409417 SPAG9O60271 1321 aaKnown RBP30.78■■■□□ 2.52
PDLIM2-207ENST00000409417 ATP10AO60312 1499 aa30.77■■■□□ 2.52
PDLIM2-207ENST00000409417 KDM4FA0A1W2PPD8 638 aa30.76■■■□□ 2.51
PDLIM2-207ENST00000409417 FGD6Q6ZV73 1430 aa30.73■■■□□ 2.51
PDLIM2-207ENST00000409417 ARID4BQ4LE39 1312 aaPredicted RBP30.73■■■□□ 2.51
PDLIM2-207ENST00000409417 C9orf84Q5VXU9 1444 aa30.71■■■□□ 2.51
PDLIM2-207ENST00000409417 CCDC141Q6ZP82 1450 aa30.71■■■□□ 2.51
PDLIM2-207ENST00000409417 PPARGC1BQ86YN6 1023 aaKnown RBP30.7■■■□□ 2.5
PDLIM2-207ENST00000409417 KIDINS220Q9ULH0 1771 aa30.69■■■□□ 2.5
PDLIM2-207ENST00000409417 ARHGEF5Q12774 1597 aa30.68■■■□□ 2.5
PDLIM2-207ENST00000409417 DIP2CQ9Y2E4 1556 aa30.68■■■□□ 2.5
PDLIM2-207ENST00000409417 ATP7AQ04656 1500 aa30.66■■■□□ 2.5
PDLIM2-207ENST00000409417 RTEL1-TNFRSF6BF6WH68 1400 aa30.66■■■□□ 2.5
PDLIM2-207ENST00000409417 ABCA6Q8N139 1617 aa30.66■■■□□ 2.5
PDLIM2-207ENST00000409417 PTPN23Q9H3S7 1636 aa30.66■■■□□ 2.5
PDLIM2-207ENST00000409417 INO80Q9ULG1 1556 aaPredicted RBP30.65■■■□□ 2.5
PDLIM2-207ENST00000409417 TSPY4P0CV99 314 aa30.64■■■□□ 2.5
PDLIM2-207ENST00000409417 TSPY10P0CW01 314 aa30.64■■■□□ 2.5
PDLIM2-207ENST00000409417 TCOF1Q13428 1488 aaKnown RBP30.64■■■□□ 2.49
PDLIM2-207ENST00000409417 REREQ9P2R6 1566 aa30.62■■■□□ 2.49
PDLIM2-207ENST00000409417 SIGLEC1Q9BZZ2 1709 aa30.6■■■□□ 2.49
PDLIM2-207ENST00000409417 AEBP2Q6ZN18 517 aaPredicted RBP30.59■■■□□ 2.49
PDLIM2-207ENST00000409417 BCORL1Q5H9F3 1711 aa30.55■■■□□ 2.48
PDLIM2-207ENST00000409417 AGLP35573 1532 aa30.54■■■□□ 2.48
PDLIM2-207ENST00000409417 ABCC5O15440 1437 aa30.53■■■□□ 2.48
PDLIM2-207ENST00000409417 FAM50AQ14320 339 aaKnown RBP30.53■■■□□ 2.48
PDLIM2-207ENST00000409417 ADAMTSL3P82987 1691 aa30.52■■■□□ 2.48
PDLIM2-207ENST00000409417 A2MP01023 1474 aa30.52■■■□□ 2.48
PDLIM2-207ENST00000409417 MLECQ14165 292 aa30.52■■■□□ 2.48
PDLIM2-207ENST00000409417 DAPK1P53355 1430 aa30.5■■■□□ 2.47
PDLIM2-207ENST00000409417 MAST1Q9Y2H9 1570 aa30.5■■■□□ 2.47
PDLIM2-207ENST00000409417 SHANK2Q9UPX8 1470 aa30.49■■■□□ 2.47
PDLIM2-207ENST00000409417 DNMT1P26358 1616 aaKnown RBP30.48■■■□□ 2.47
PDLIM2-207ENST00000409417 ADGBQ8N7X0 1667 aa30.48■■■□□ 2.47
PDLIM2-207ENST00000409417 DHX29Q7Z478 1369 aaKnown RBP30.47■■■□□ 2.47
PDLIM2-207ENST00000409417 PLXNC1O60486 1568 aa30.47■■■□□ 2.47
PDLIM2-207ENST00000409417 MADDQ8WXG6 1647 aa30.43■■■□□ 2.46
PDLIM2-207ENST00000409417 CROCC2H7BZ55 1655 aa30.41■■■□□ 2.46
PDLIM2-207ENST00000409417 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.41■■■□□ 2.46
PDLIM2-207ENST00000409417 PTPRMP28827 1452 aa30.39■■■□□ 2.46
PDLIM2-207ENST00000409417 CHIC2Q9UKJ5 165 aa30.38■■■□□ 2.45
PDLIM2-207ENST00000409417 RRBP1Q9P2E9 1410 aaKnown RBP30.36■■■□□ 2.45
PDLIM2-207ENST00000409417 ANKRD30AQ9BXX3 1397 aa30.35■■■□□ 2.45
PDLIM2-207ENST00000409417 KIF15Q9NS87 1388 aa30.35■■■□□ 2.45
PDLIM2-207ENST00000409417 KIF3BO15066 747 aa30.34■■■□□ 2.45
PDLIM2-207ENST00000409417 RRP7BPQ9NSQ0 103 aa30.34■■■□□ 2.45
PDLIM2-207ENST00000409417 GGT6Q6P531 493 aa30.32■■■□□ 2.44
PDLIM2-207ENST00000409417 RIMS1Q86UR5 1692 aaKnown RBP30.32■■■□□ 2.44
PDLIM2-207ENST00000409417 FER1L4A9Z1Z3 1794 aa30.32■■■□□ 2.44
PDLIM2-207ENST00000409417 NCOA1Q15788 1441 aa30.32■■■□□ 2.44
PDLIM2-207ENST00000409417 ESF1Q9H501 851 aaKnown RBP30.31■■■□□ 2.44
PDLIM2-207ENST00000409417 DUOX2Q9NRD8 1548 aa30.31■■■□□ 2.44
PDLIM2-207ENST00000409417 PPP6R1Q9UPN7 881 aa30.31■■■□□ 2.44
PDLIM2-207ENST00000409417 ADGRL2O95490 1459 aa30.3■■■□□ 2.44
PDLIM2-207ENST00000409417 PTPRKQ15262 1439 aa30.29■■■□□ 2.44
PDLIM2-207ENST00000409417 CNTLNQ9NXG0 1405 aa30.27■■■□□ 2.44
PDLIM2-207ENST00000409417 ERBINQ96RT1 1412 aa30.24■■■□□ 2.43
PDLIM2-207ENST00000409417 ITGAEP38570 1179 aa30.24■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms