RNA–Protein interactions for RNA: ENST00000409375.1

AP1S3-204, Transcript of adaptor related protein complex 1 subunit sigma 3, humanhuman

TSL 3 BASIC

Gene AP1S3, Length 552 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3-204ENST00000409375 ARHGAP5Q13017 1502 aa23.37■■□□□ 1.33
AP1S3-204ENST00000409375 CFAP74Q9C0B2 1584 aa23.35■■□□□ 1.33
AP1S3-204ENST00000409375 EFCAB2Q5VUJ9 269 aa23.35■■□□□ 1.33
AP1S3-204ENST00000409375 CDC42BPBQ9Y5S2 1711 aa23.35■■□□□ 1.33
AP1S3-204ENST00000409375 TRHP20396 242 aaPredicted RBP23.34■■□□□ 1.33
AP1S3-204ENST00000409375 RRBP1Q9P2E9 1410 aaKnown RBP23.32■■□□□ 1.32
AP1S3-204ENST00000409375 TEX14Q8IWB6 1497 aa23.31■■□□□ 1.32
AP1S3-204ENST00000409375 FANCAO15360 1455 aa23.3■■□□□ 1.32
AP1S3-204ENST00000409375 PTPN23Q9H3S7 1636 aa23.3■■□□□ 1.32
AP1S3-204ENST00000409375 PLEKHH2Q8IVE3 1493 aa23.3■■□□□ 1.32
AP1S3-204ENST00000409375 ZNF777Q9ULD5 760 aaPredicted RBP23.28■■□□□ 1.32
AP1S3-204ENST00000409375 NEO1Q92859 1461 aa23.28■■□□□ 1.32
AP1S3-204ENST00000409375 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.27■■□□□ 1.32
AP1S3-204ENST00000409375 TCOF1Q13428 1488 aaKnown RBP23.27■■□□□ 1.32
AP1S3-204ENST00000409375 TSPOAP1O95153 1857 aa23.26■■□□□ 1.31
AP1S3-204ENST00000409375 CAMSAP2Q08AD1 1489 aa23.26■■□□□ 1.31
AP1S3-204ENST00000409375 FAM50AQ14320 339 aaKnown RBP23.25■■□□□ 1.31
AP1S3-204ENST00000409375 SAMD9LQ8IVG5 1584 aa23.23■■□□□ 1.31
AP1S3-204ENST00000409375 TRIM26Q12899 539 aaPredicted RBP23.23■■□□□ 1.31
AP1S3-204ENST00000409375 AKNAQ7Z591 1439 aa23.22■■□□□ 1.31
AP1S3-204ENST00000409375 KIAA1107Q9UPP5 1409 aa23.21■■□□□ 1.31
AP1S3-204ENST00000409375 PPRC1Q5VV67 1664 aaKnown RBP23.21■■□□□ 1.31
AP1S3-204ENST00000409375 ADGRL1O94910 1474 aa23.2■■□□□ 1.3
AP1S3-204ENST00000409375 ABCC1P33527 1531 aa23.19■■□□□ 1.3
AP1S3-204ENST00000409375 RSPH4AQ5TD94 716 aa23.19■■□□□ 1.3
AP1S3-204ENST00000409375 ZNF644Q9H582 1327 aaPredicted RBP23.17■■□□□ 1.3
AP1S3-204ENST00000409375 SYCP2Q9BX26 1530 aa23.16■■□□□ 1.3
AP1S3-204ENST00000409375 ARHGEF5Q12774 1597 aa23.15■■□□□ 1.3
AP1S3-204ENST00000409375 SCAPERQ9BY12 1400 aa23.15■■□□□ 1.3
AP1S3-204ENST00000409375 DNMT1P26358 1616 aaKnown RBP23.14■■□□□ 1.29
AP1S3-204ENST00000409375 CCDC141Q6ZP82 1450 aa23.12■■□□□ 1.29
AP1S3-204ENST00000409375 DENND4BO75064 1496 aaPredicted RBP23.11■■□□□ 1.29
AP1S3-204ENST00000409375 HNRNPMP52272 730 aaKnown RBP eCLIP23.11■■□□□ 1.29
AP1S3-204ENST00000409375 MBD5Q9P267 1494 aa23.11■■□□□ 1.29
AP1S3-204ENST00000409375 DAPK1P53355 1430 aa23.1■■□□□ 1.29
AP1S3-204ENST00000409375 ZNF518AQ6AHZ1 1483 aa23.1■■□□□ 1.29
AP1S3-204ENST00000409375 TSPY4P0CV99 314 aa23.09■■□□□ 1.29
AP1S3-204ENST00000409375 TSPY10P0CW01 314 aa23.09■■□□□ 1.29
AP1S3-204ENST00000409375 ARHGEF12Q9NZN5 1544 aa23.08■■□□□ 1.28
AP1S3-204ENST00000409375 CROCC2H7BZ55 1655 aa23.07■■□□□ 1.28
AP1S3-204ENST00000409375 SHANK2Q9UPX8 1470 aa23.07■■□□□ 1.28
AP1S3-204ENST00000409375 ITGAEP38570 1179 aa23.07■■□□□ 1.28
AP1S3-204ENST00000409375 POGZQ7Z3K3 1410 aa23.07■■□□□ 1.28
AP1S3-204ENST00000409375 ABCC5O15440 1437 aa23.06■■□□□ 1.28
AP1S3-204ENST00000409375 TRAPPC8Q9Y2L5 1435 aa23.04■■□□□ 1.28
AP1S3-204ENST00000409375 MAST1Q9Y2H9 1570 aa23.02■■□□□ 1.28
AP1S3-204ENST00000409375 RICTORQ6R327 1708 aa23.02■■□□□ 1.28
AP1S3-204ENST00000409375 C9orf84Q5VXU9 1444 aa23.01■■□□□ 1.27
AP1S3-204ENST00000409375 SPAG9O60271 1321 aaKnown RBP23.01■■□□□ 1.27
AP1S3-204ENST00000409375 KDM5CP41229 1560 aa23.01■■□□□ 1.27
AP1S3-204ENST00000409375 ADGBQ8N7X0 1667 aa23■■□□□ 1.27
AP1S3-204ENST00000409375 RTEL1-TNFRSF6BF6WH68 1400 aa22.99■■□□□ 1.27
AP1S3-204ENST00000409375 AFAP1Q8N556 730 aa22.99■■□□□ 1.27
AP1S3-204ENST00000409375 KDM6BO15054 1643 aa22.99■■□□□ 1.27
AP1S3-204ENST00000409375 MYT1LQ9UL68 1186 aa22.98■■□□□ 1.27
AP1S3-204ENST00000409375 ANKRD30AQ9BXX3 1397 aa22.98■■□□□ 1.27
AP1S3-204ENST00000409375 HECW2Q9P2P5 1572 aa22.97■■□□□ 1.27
AP1S3-204ENST00000409375 RAPGEF3O95398 923 aa22.97■■□□□ 1.27
AP1S3-204ENST00000409375 ROCK1Q13464 1354 aa22.97■■□□□ 1.27
AP1S3-204ENST00000409375 ZMYM4Q5VZL5 1548 aa22.97■■□□□ 1.27
AP1S3-204ENST00000409375 ADGRL2O95490 1459 aa22.96■■□□□ 1.27
AP1S3-204ENST00000409375 ATP7AQ04656 1500 aa22.96■■□□□ 1.27
AP1S3-204ENST00000409375 PTPRKQ15262 1439 aa22.95■■□□□ 1.26
AP1S3-204ENST00000409375 FRMPD1Q5SYB0 1578 aa22.95■■□□□ 1.26
AP1S3-204ENST00000409375 PCGF6Q9BYE7 350 aa22.95■■□□□ 1.26
AP1S3-204ENST00000409375 MLH3Q9UHC1 1453 aa22.95■■□□□ 1.26
AP1S3-204ENST00000409375 CHIC2Q9UKJ5 165 aa22.95■■□□□ 1.26
AP1S3-204ENST00000409375 INO80Q9ULG1 1556 aaPredicted RBP22.95■■□□□ 1.26
AP1S3-204ENST00000409375 MAGI2Q86UL8 1455 aa22.94■■□□□ 1.26
AP1S3-204ENST00000409375 PLXNC1O60486 1568 aa22.93■■□□□ 1.26
AP1S3-204ENST00000409375 ZFYVE16Q7Z3T8 1539 aa22.93■■□□□ 1.26
AP1S3-204ENST00000409375 COL17A1Q9UMD9 1497 aaPredicted RBP22.91■■□□□ 1.26
AP1S3-204ENST00000409375 NCOA1Q15788 1441 aa22.91■■□□□ 1.26
AP1S3-204ENST00000409375 KIDINS220Q9ULH0 1771 aa22.89■■□□□ 1.26
AP1S3-204ENST00000409375 HFM1A2PYH4 1435 aa22.89■■□□□ 1.25
AP1S3-204ENST00000409375 KIF15Q9NS87 1388 aa22.88■■□□□ 1.25
AP1S3-204ENST00000409375 GCC2Q8IWJ2 1684 aa22.87■■□□□ 1.25
AP1S3-204ENST00000409375 RRP7BPQ9NSQ0 103 aa22.86■■□□□ 1.25
AP1S3-204ENST00000409375 DUOX2Q9NRD8 1548 aa22.85■■□□□ 1.25
AP1S3-204ENST00000409375 ACIN1Q9UKV3 1341 aaKnown RBP22.82■■□□□ 1.24
AP1S3-204ENST00000409375 NAIPQ13075 1403 aa22.82■■□□□ 1.24
AP1S3-204ENST00000409375 SETD5Q9C0A6 1442 aa22.82■■□□□ 1.24
AP1S3-204ENST00000409375 ABCA6Q8N139 1617 aa22.82■■□□□ 1.24
AP1S3-204ENST00000409375 ARHGEF40Q8TER5 1519 aa22.82■■□□□ 1.24
AP1S3-204ENST00000409375 DIP2CQ9Y2E4 1556 aa22.81■■□□□ 1.24
AP1S3-204ENST00000409375 ERBINQ96RT1 1412 aa22.8■■□□□ 1.24
AP1S3-204ENST00000409375 ANKRD50Q9ULJ7 1429 aa22.79■■□□□ 1.24
AP1S3-204ENST00000409375 YEATS2Q9ULM3 1422 aa22.79■■□□□ 1.24
AP1S3-204ENST00000409375 ATP10AO60312 1499 aa22.79■■□□□ 1.24
AP1S3-204ENST00000409375 A2MP01023 1474 aa22.79■■□□□ 1.24
AP1S3-204ENST00000409375 DHX29Q7Z478 1369 aaKnown RBP22.77■■□□□ 1.24
AP1S3-204ENST00000409375 REREQ9P2R6 1566 aa22.76■■□□□ 1.23
AP1S3-204ENST00000409375 EIF2AK4Q9P2K8 1649 aaKnown RBP22.75■■□□□ 1.23
AP1S3-204ENST00000409375 HRCP23327 699 aa22.74■■□□□ 1.23
AP1S3-204ENST00000409375 RAB3GAP2Q9H2M9 1393 aa22.73■■□□□ 1.23
AP1S3-204ENST00000409375 BCORL1Q5H9F3 1711 aa22.68■■□□□ 1.22
AP1S3-204ENST00000409375 AGLP35573 1532 aa22.67■■□□□ 1.22
AP1S3-204ENST00000409375 KIF3BO15066 747 aa22.66■■□□□ 1.22
AP1S3-204ENST00000409375 UNC13BO14795 1591 aa22.63■■□□□ 1.21
AP1S3-204ENST00000409375 TRIM52Q96A61 297 aa22.63■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms