RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 FANCAO15360 1455 aa45.7■■■■■ 4.91
USP42-202ENST00000404008 ARHGAP5Q13017 1502 aa45.7■■■■■ 4.91
USP42-202ENST00000404008 NEO1Q92859 1461 aa45.69■■■■■ 4.9
USP42-202ENST00000404008 EFCAB2Q5VUJ9 269 aa45.59■■■■■ 4.89
USP42-202ENST00000404008 PHLDB1Q86UU1 1377 aa45.59■■■■■ 4.89
USP42-202ENST00000404008 PPARGC1BQ86YN6 1023 aaKnown RBP45.57■■■■■ 4.88
USP42-202ENST00000404008 AKNAQ7Z591 1439 aa45.57■■■■■ 4.88
USP42-202ENST00000404008 KDM6BO15054 1643 aa45.54■■■■■ 4.88
USP42-202ENST00000404008 MYOM3Q5VTT5 1437 aa45.53■■■■■ 4.88
USP42-202ENST00000404008 CFDP1Q9UEE9 299 aaPredicted RBP45.53■■■■■ 4.88
USP42-202ENST00000404008 SAMD9LQ8IVG5 1584 aa45.51■■■■■ 4.88
USP42-202ENST00000404008 ADGRL1O94910 1474 aa45.47■■■■■ 4.87
USP42-202ENST00000404008 COL17A1Q9UMD9 1497 aaPredicted RBP45.46■■■■■ 4.87
USP42-202ENST00000404008 ABCC1P33527 1531 aa45.45■■■■■ 4.87
USP42-202ENST00000404008 MIA2Q96PC5 1412 aa45.42■■■■■ 4.86
USP42-202ENST00000404008 ZNF777Q9ULD5 760 aaPredicted RBP45.41■■■■■ 4.86
USP42-202ENST00000404008 SCAPERQ9BY12 1400 aa45.37■■■■■ 4.85
USP42-202ENST00000404008 RICTORQ6R327 1708 aa45.37■■■■■ 4.85
USP42-202ENST00000404008 CAMSAP2Q08AD1 1489 aa45.36■■■■■ 4.85
USP42-202ENST00000404008 PLEKHH2Q8IVE3 1493 aa45.35■■■■■ 4.85
USP42-202ENST00000404008 FGD6Q6ZV73 1430 aa45.35■■■■■ 4.85
USP42-202ENST00000404008 DENND4BO75064 1496 aaPredicted RBP45.34■■■■■ 4.85
USP42-202ENST00000404008 FRMPD1Q5SYB0 1578 aa45.34■■■■■ 4.85
USP42-202ENST00000404008 ARHGEF12Q9NZN5 1544 aa45.34■■■■■ 4.85
USP42-202ENST00000404008 ZNF644Q9H582 1327 aaPredicted RBP45.34■■■■■ 4.85
USP42-202ENST00000404008 SYCP2Q9BX26 1530 aa45.33■■■■■ 4.85
USP42-202ENST00000404008 PTPN23Q9H3S7 1636 aa45.32■■■■■ 4.85
USP42-202ENST00000404008 KIAA1107Q9UPP5 1409 aa45.31■■■■■ 4.84
USP42-202ENST00000404008 POGZQ7Z3K3 1410 aa45.29■■■■■ 4.84
USP42-202ENST00000404008 RAPGEF3O95398 923 aa45.26■■■■■ 4.84
USP42-202ENST00000404008 TCOF1Q13428 1488 aaKnown RBP45.23■■■■■ 4.83
USP42-202ENST00000404008 ZNF518AQ6AHZ1 1483 aa45.22■■■■■ 4.83
USP42-202ENST00000404008 TRAPPC8Q9Y2L5 1435 aa45.21■■■■■ 4.83
USP42-202ENST00000404008 MBD5Q9P267 1494 aa45.21■■■■■ 4.83
USP42-202ENST00000404008 HNRNPMP52272 730 aaKnown RBP eCLIP45.2■■■■■ 4.831e-6■■■□□ 14.6
USP42-202ENST00000404008 KDM5CP41229 1560 aa45.18■■■■■ 4.82
USP42-202ENST00000404008 ZMYM4Q5VZL5 1548 aa45.17■■■■■ 4.82
USP42-202ENST00000404008 ARHGEF5Q12774 1597 aa45.16■■■■■ 4.82
USP42-202ENST00000404008 AFAP1Q8N556 730 aa45.12■■■■■ 4.81
USP42-202ENST00000404008 CCDC141Q6ZP82 1450 aa45.08■■■■■ 4.81
USP42-202ENST00000404008 HECW2Q9P2P5 1572 aa45.06■■■■■ 4.8
USP42-202ENST00000404008 RRBP1Q9P2E9 1410 aaKnown RBP45.06■■■■■ 4.8
USP42-202ENST00000404008 RSPH4AQ5TD94 716 aa45.03■■■■■ 4.8
USP42-202ENST00000404008 DNMT1P26358 1616 aaKnown RBP45.03■■■■■ 4.8
USP42-202ENST00000404008 MAGI2Q86UL8 1455 aa45.02■■■■■ 4.8
USP42-202ENST00000404008 CROCC2H7BZ55 1655 aa45.01■■■■■ 4.8
USP42-202ENST00000404008 MLH3Q9UHC1 1453 aa45.01■■■■■ 4.8
USP42-202ENST00000404008 FAM50AQ14320 339 aaKnown RBP45■■■■■ 4.79
USP42-202ENST00000404008 INO80Q9ULG1 1556 aaPredicted RBP44.99■■■■■ 4.79
USP42-202ENST00000404008 KIDINS220Q9ULH0 1771 aa44.98■■■■■ 4.79
USP42-202ENST00000404008 ZFYVE16Q7Z3T8 1539 aa44.97■■■■■ 4.79
USP42-202ENST00000404008 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP44.96■■■■■ 4.79
USP42-202ENST00000404008 ARHGEF40Q8TER5 1519 aa44.96■■■■■ 4.79
USP42-202ENST00000404008 SPAG9O60271 1321 aaKnown RBP44.94■■■■■ 4.78
USP42-202ENST00000404008 ABCC5O15440 1437 aa44.93■■■■■ 4.78
USP42-202ENST00000404008 DAPK1P53355 1430 aa44.93■■■■■ 4.78
USP42-202ENST00000404008 ATP7AQ04656 1500 aa44.93■■■■■ 4.78
USP42-202ENST00000404008 YEATS2Q9ULM3 1422 aa44.92■■■■■ 4.78
USP42-202ENST00000404008 MAST1Q9Y2H9 1570 aa44.91■■■■■ 4.78
USP42-202ENST00000404008 ABCA6Q8N139 1617 aa44.89■■■■■ 4.78
USP42-202ENST00000404008 SHANK2Q9UPX8 1470 aa44.88■■■■■ 4.77
USP42-202ENST00000404008 RTEL1-TNFRSF6BF6WH68 1400 aa44.87■■■■■ 4.77
USP42-202ENST00000404008 DIP2CQ9Y2E4 1556 aa44.86■■■■■ 4.77
USP42-202ENST00000404008 TSPY4P0CV99 314 aa44.84■■■■■ 4.77
USP42-202ENST00000404008 TSPY10P0CW01 314 aa44.84■■■■■ 4.77
USP42-202ENST00000404008 MYT1LQ9UL68 1186 aa44.84■■■■■ 4.77
USP42-202ENST00000404008 C9orf84Q5VXU9 1444 aa44.84■■■■■ 4.77
USP42-202ENST00000404008 ATP10AO60312 1499 aa44.76■■■■■ 4.76
USP42-202ENST00000404008 ADGBQ8N7X0 1667 aa44.76■■■■■ 4.76
USP42-202ENST00000404008 PLXNC1O60486 1568 aa44.75■■■■■ 4.75
USP42-202ENST00000404008 PTPRKQ15262 1439 aa44.72■■■■■ 4.75
USP42-202ENST00000404008 REREQ9P2R6 1566 aa44.72■■■■■ 4.75
USP42-202ENST00000404008 SIGLEC1Q9BZZ2 1709 aa44.69■■■■■ 4.75
USP42-202ENST00000404008 ADGRL2O95490 1459 aa44.66■■■■■ 4.74
USP42-202ENST00000404008 ITGAEP38570 1179 aa44.64■■■■■ 4.74
USP42-202ENST00000404008 CHIC2Q9UKJ5 165 aa44.64■■■■■ 4.74
USP42-202ENST00000404008 A2MP01023 1474 aa44.61■■■■■ 4.73
USP42-202ENST00000404008 NCOA1Q15788 1441 aa44.59■■■■■ 4.73
USP42-202ENST00000404008 ANKRD30AQ9BXX3 1397 aa44.58■■■■■ 4.73
USP42-202ENST00000404008 ROCK1Q13464 1354 aa44.54■■■■■ 4.72
USP42-202ENST00000404008 KIF15Q9NS87 1388 aa44.54■■■■■ 4.72
USP42-202ENST00000404008 DUOX2Q9NRD8 1548 aa44.53■■■■■ 4.72
USP42-202ENST00000404008 AGLP35573 1532 aa44.52■■■■■ 4.72
USP42-202ENST00000404008 DHX29Q7Z478 1369 aaKnown RBP44.52■■■■■ 4.72
USP42-202ENST00000404008 RRP7BPQ9NSQ0 103 aa44.51■■■■■ 4.72
USP42-202ENST00000404008 BCORL1Q5H9F3 1711 aa44.45■■■■■ 4.71
USP42-202ENST00000404008 ARID4BQ4LE39 1312 aaPredicted RBP44.44■■■■■ 4.71
USP42-202ENST00000404008 EIF2AK4Q9P2K8 1649 aaKnown RBP44.43■■■■■ 4.7
USP42-202ENST00000404008 ERBINQ96RT1 1412 aa44.4■■■■■ 4.7
USP42-202ENST00000404008 GCC2Q8IWJ2 1684 aa44.35■■■■■ 4.69
USP42-202ENST00000404008 ANKRD50Q9ULJ7 1429 aa44.3■■■■■ 4.68
USP42-202ENST00000404008 RNF17Q9BXT8 1623 aaKnown RBP44.3■■■■■ 4.68
USP42-202ENST00000404008 ADAMTSL3P82987 1691 aa44.29■■■■■ 4.68
USP42-202ENST00000404008 KIF3BO15066 747 aa44.28■■■■■ 4.68
USP42-202ENST00000404008 HFM1A2PYH4 1435 aa44.27■■■■■ 4.68
USP42-202ENST00000404008 NAIPQ13075 1403 aa44.27■■■■■ 4.68
USP42-202ENST00000404008 MLECQ14165 292 aa44.26■■■■■ 4.68
USP42-202ENST00000404008 DEPDC5O75140 1603 aa44.23■■■■■ 4.67
USP42-202ENST00000404008 FER1L4A9Z1Z3 1794 aa44.21■■■■■ 4.67
USP42-202ENST00000404008 MROH1Q8NDA8 1641 aa44.2■■■■■ 4.67
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms