RNA–Protein interactions for RNA: ENST00000399275.6

SMAD9-203, Transcript of SMAD family member 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMAD9, Length 5,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-203ENST00000399275 TOP2AP11388 1531 aaKnown RBP12.15□□□□□ -0.46
SMAD9-203ENST00000399275 KCNH8Q96L42 1107 aa12.15□□□□□ -0.46
SMAD9-203ENST00000399275 CARD11Q9BXL7 1154 aa12.14□□□□□ -0.47
SMAD9-203ENST00000399275 PLEKHG5O94827 1062 aa12.13□□□□□ -0.47
SMAD9-203ENST00000399275 TSPY4P0CV99 314 aa12.13□□□□□ -0.47
SMAD9-203ENST00000399275 TSPY10P0CW01 314 aa12.13□□□□□ -0.47
SMAD9-203ENST00000399275 RGS3P49796 1198 aa12.12□□□□□ -0.47
SMAD9-203ENST00000399275 TAF7LQ5H9L4 462 aa12.12□□□□□ -0.47
SMAD9-203ENST00000399275 TEX35Q5T0J7 233 aa12.12□□□□□ -0.47
SMAD9-203ENST00000399275 MEX3CQ5U5Q3 659 aaKnown RBP12.12□□□□□ -0.47
SMAD9-203ENST00000399275 RRP9O43818 475 aaKnown RBP12.11□□□□□ -0.47
SMAD9-203ENST00000399275 CDCA8Q53HL2 280 aa12.11□□□□□ -0.47
SMAD9-203ENST00000399275 HSCBQ8IWL3 235 aa12.11□□□□□ -0.47
SMAD9-203ENST00000399275 GBP4Q96PP9 640 aa12.1□□□□□ -0.47
SMAD9-203ENST00000399275 ZMYND15Q9H091 742 aa12.1□□□□□ -0.47
SMAD9-203ENST00000399275 RCAN3Q9UKA8 241 aa12.1□□□□□ -0.47
SMAD9-203ENST00000399275 ZBED9Q6R2W3 1325 aa12.1□□□□□ -0.47
SMAD9-203ENST00000399275 HTATSF1O43719 755 aaKnown RBP12.1□□□□□ -0.47
SMAD9-203ENST00000399275 GPS2Q13227 327 aa12.09□□□□□ -0.47
SMAD9-203ENST00000399275 NEFHP12036 1026 aa12.08□□□□□ -0.48
SMAD9-203ENST00000399275 KNSTRNQ9Y448 316 aa12.08□□□□□ -0.48
SMAD9-203ENST00000399275 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.08□□□□□ -0.48
SMAD9-203ENST00000399275 TAF3Q5VWG9 929 aa12.08□□□□□ -0.48
SMAD9-203ENST00000399275 RALBP1Q15311 655 aa12.07□□□□□ -0.48
SMAD9-203ENST00000399275 FAM43AQ8N2R8 423 aa12.07□□□□□ -0.48
SMAD9-203ENST00000399275 MAPK8IP2Q13387 824 aaPredicted RBP12.07□□□□□ -0.48
SMAD9-203ENST00000399275 BBXQ8WY36 941 aaPredicted RBP12.07□□□□□ -0.48
SMAD9-203ENST00000399275 PDE3BQ13370 1112 aa12.07□□□□□ -0.48
SMAD9-203ENST00000399275 AEBP1Q8IUX7 1158 aa12.07□□□□□ -0.48
SMAD9-203ENST00000399275 TPM2P07951 284 aa12.06□□□□□ -0.48
SMAD9-203ENST00000399275 SMARCA4P51532 1647 aa12.06□□□□□ -0.48
SMAD9-203ENST00000399275 SENP3-EIF4A1A0A087X0R7 540 aa12.06□□□□□ -0.48
SMAD9-203ENST00000399275 IL27Q8NEV9 243 aa12.06□□□□□ -0.48
SMAD9-203ENST00000399275 ZNF526Q8TF50 670 aaPredicted RBP12.05□□□□□ -0.48
SMAD9-203ENST00000399275 SPRYD3Q8NCJ5 442 aa12.05□□□□□ -0.48
SMAD9-203ENST00000399275 FMN1Q68DA7 1419 aa12.05□□□□□ -0.48
SMAD9-203ENST00000399275 MS4A1P11836 297 aa12.05□□□□□ -0.48
SMAD9-203ENST00000399275 HOMEZQ8IX15 550 aa12.05□□□□□ -0.48
SMAD9-203ENST00000399275 RUSC2Q8N2Y8 1516 aa12.04□□□□□ -0.48
SMAD9-203ENST00000399275 GOLGA6L4A6NEF3 574 aa12.04□□□□□ -0.48
SMAD9-203ENST00000399275 CARMIL1Q5VZK9 1371 aa12.04□□□□□ -0.48
SMAD9-203ENST00000399275 SLKQ9H2G2 1235 aaPredicted RBP12.04□□□□□ -0.48
SMAD9-203ENST00000399275 RAPGEF2Q9Y4G8 1499 aa12.03□□□□□ -0.48
SMAD9-203ENST00000399275 CASC1Q6TDU7 716 aa12.03□□□□□ -0.48
SMAD9-203ENST00000399275 KTN1Q86UP2 1357 aaKnown RBP12.03□□□□□ -0.48
SMAD9-203ENST00000399275 FBLN2P98095 1184 aa12.03□□□□□ -0.48
SMAD9-203ENST00000399275 CSPP1Q1MSJ5 1256 aa12.03□□□□□ -0.48
SMAD9-203ENST00000399275 CWC15Q9P013 229 aaKnown RBP12.03□□□□□ -0.48
SMAD9-203ENST00000399275 RDXP35241 583 aaKnown RBP12.03□□□□□ -0.48
SMAD9-203ENST00000399275 ROCK2O75116 1388 aaKnown RBP12.03□□□□□ -0.48
SMAD9-203ENST00000399275 PDE4AP27815 886 aa12.02□□□□□ -0.48
SMAD9-203ENST00000399275 FTSJ3Q8IY81 847 aaKnown RBP12.02□□□□□ -0.49
SMAD9-203ENST00000399275 CFAP53Q96M91 514 aa12.01□□□□□ -0.49
SMAD9-203ENST00000399275 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.01□□□□□ -0.49
SMAD9-203ENST00000399275 SYAP1Q96A49 352 aaPredicted RBP12□□□□□ -0.49
SMAD9-203ENST00000399275 CHMP4BQ9H444 224 aaKnown RBP12□□□□□ -0.49
SMAD9-203ENST00000399275 PRKRIP1Q9H875 184 aaPredicted RBP12□□□□□ -0.49
SMAD9-203ENST00000399275 CC2D1BQ5T0F9 858 aaKnown RBP11.99□□□□□ -0.49
SMAD9-203ENST00000399275 PAXIP1Q6ZW49 1069 aaPredicted RBP11.99□□□□□ -0.49
SMAD9-203ENST00000399275 HMGB1P09429 215 aaKnown RBP11.98□□□□□ -0.49
SMAD9-203ENST00000399275 HSP90AB3PQ58FF7 597 aa11.98□□□□□ -0.49
SMAD9-203ENST00000399275 CUX2O14529 1486 aa11.98□□□□□ -0.49
SMAD9-203ENST00000399275 SMARCA2P51531 1590 aa11.98□□□□□ -0.49
SMAD9-203ENST00000399275 MPHOSPH9Q99550 1183 aa11.97□□□□□ -0.49
SMAD9-203ENST00000399275 CFDP1Q9UEE9 299 aaPredicted RBP11.97□□□□□ -0.49
SMAD9-203ENST00000399275 TMF1P82094 1093 aa11.97□□□□□ -0.49
SMAD9-203ENST00000399275 PHLDB1Q86UU1 1377 aa11.97□□□□□ -0.49
SMAD9-203ENST00000399275 DEF6Q9H4E7 631 aa11.96□□□□□ -0.49
SMAD9-203ENST00000399275 CALD1Q05682 793 aaKnown RBP11.96□□□□□ -0.5
SMAD9-203ENST00000399275 RRP12Q5JTH9 1297 aaKnown RBP11.96□□□□□ -0.5
SMAD9-203ENST00000399275 RRP1P56182 461 aaKnown RBP11.96□□□□□ -0.5
SMAD9-203ENST00000399275 FRAT1Q92837 279 aaPredicted RBP11.96□□□□□ -0.5
SMAD9-203ENST00000399275 CFAP44Q96MT7 982 aa11.96□□□□□ -0.5
SMAD9-203ENST00000399275 IRX3P78415 501 aaPredicted RBP11.95□□□□□ -0.5
SMAD9-203ENST00000399275 FAM161AQ3B820 660 aa11.95□□□□□ -0.5
SMAD9-203ENST00000399275 CENPQQ7L2Z9 268 aaPredicted RBP11.95□□□□□ -0.5
SMAD9-203ENST00000399275 KIF15Q9NS87 1388 aa11.94□□□□□ -0.5
SMAD9-203ENST00000399275 RBM10P98175 930 aaKnown RBP11.94□□□□□ -0.5
SMAD9-203ENST00000399275 R3HCC1Q9Y3T6 440 aaKnown RBP11.94□□□□□ -0.5
SMAD9-203ENST00000399275 KIF21BO75037 1637 aa11.94□□□□□ -0.5
SMAD9-203ENST00000399275 H0YHG0 523 aa11.93□□□□□ -0.5
SMAD9-203ENST00000399275 RGL3Q3MIN7 710 aa11.93□□□□□ -0.5
SMAD9-203ENST00000399275 NLRP13Q86W25 1043 aa11.93□□□□□ -0.5
SMAD9-203ENST00000399275 L3MBTL2Q969R5 705 aa11.93□□□□□ -0.5
SMAD9-203ENST00000399275 TSPYL1Q9H0U9 437 aa11.93□□□□□ -0.5
SMAD9-203ENST00000399275 BRPF3Q9ULD4 1205 aa11.93□□□□□ -0.5
SMAD9-203ENST00000399275 PMFBP1Q8TBY8 1022 aa11.92□□□□□ -0.5
SMAD9-203ENST00000399275 MYBBP1AQ9BQG0 1328 aaKnown RBP11.92□□□□□ -0.5
SMAD9-203ENST00000399275 RRBP1Q9P2E9 1410 aaKnown RBP11.92□□□□□ -0.5
SMAD9-203ENST00000399275 CCDC191Q8NCU4 936 aa11.92□□□□□ -0.5
SMAD9-203ENST00000399275 CHGAP10645 457 aaKnown RBP11.92□□□□□ -0.5
SMAD9-203ENST00000399275 CNTLNQ9NXG0 1405 aa11.91□□□□□ -0.5
SMAD9-203ENST00000399275 TULP1O00294 542 aaPredicted RBP11.91□□□□□ -0.5
SMAD9-203ENST00000399275 RWDD1Q9H446 243 aaPredicted RBP11.91□□□□□ -0.5
SMAD9-203ENST00000399275 PLEKHD1A6NEE1 506 aa11.91□□□□□ -0.5
SMAD9-203ENST00000399275 DDX11L8A8MPP1 907 aa11.91□□□□□ -0.5
SMAD9-203ENST00000399275 DCAF11Q8TEB1 546 aa11.91□□□□□ -0.5
SMAD9-203ENST00000399275 CCDC9Q9Y3X0 531 aaKnown RBP11.91□□□□□ -0.5
SMAD9-203ENST00000399275 CCDC18Q5T9S5 1454 aa11.9□□□□□ -0.5
SMAD9-203ENST00000399275 EXOC6Q8TAG9 804 aa11.9□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms