RNA–Protein interactions for RNA: ENST00000397200.8

CAPN3-207, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-207ENST00000397200 FGD6Q6ZV73 1430 aa22.66■■□□□ 1.22
CAPN3-207ENST00000397200 CFDP1Q9UEE9 299 aaPredicted RBP22.66■■□□□ 1.22
CAPN3-207ENST00000397200 ARHGAP5Q13017 1502 aa22.66■■□□□ 1.22
CAPN3-207ENST00000397200 ARAP3Q8WWN8 1544 aa22.66■■□□□ 1.22
CAPN3-207ENST00000397200 MIA2Q96PC5 1412 aa22.65■■□□□ 1.22
CAPN3-207ENST00000397200 PTPN23Q9H3S7 1636 aa22.62■■□□□ 1.21
CAPN3-207ENST00000397200 TSPOAP1O95153 1857 aa22.62■■□□□ 1.21
CAPN3-207ENST00000397200 TRHP20396 242 aaPredicted RBP22.61■■□□□ 1.21
CAPN3-207ENST00000397200 RRBP1Q9P2E9 1410 aaKnown RBP22.61■■□□□ 1.21
CAPN3-207ENST00000397200 EFCAB2Q5VUJ9 269 aa22.6■■□□□ 1.21
CAPN3-207ENST00000397200 ZNF777Q9ULD5 760 aaPredicted RBP22.6■■□□□ 1.21
CAPN3-207ENST00000397200 ZEB1P37275 1124 aaPredicted RBP22.59■■□□□ 1.21
CAPN3-207ENST00000397200 CFAP74Q9C0B2 1584 aa22.59■■□□□ 1.21
CAPN3-207ENST00000397200 FANCAO15360 1455 aa22.59■■□□□ 1.21
CAPN3-207ENST00000397200 PPRC1Q5VV67 1664 aaKnown RBP22.57■■□□□ 1.2
CAPN3-207ENST00000397200 CAMSAP2Q08AD1 1489 aa22.56■■□□□ 1.2
CAPN3-207ENST00000397200 TCOF1Q13428 1488 aaKnown RBP22.56■■□□□ 1.2
CAPN3-207ENST00000397200 SAMD9LQ8IVG5 1584 aa22.56■■□□□ 1.2
CAPN3-207ENST00000397200 FAM50AQ14320 339 aaKnown RBP22.55■■□□□ 1.2
CAPN3-207ENST00000397200 TEX14Q8IWB6 1497 aa22.54■■□□□ 1.2
CAPN3-207ENST00000397200 ZNF644Q9H582 1327 aaPredicted RBP22.54■■□□□ 1.2
CAPN3-207ENST00000397200 PLEKHH2Q8IVE3 1493 aa22.52■■□□□ 1.2
CAPN3-207ENST00000397200 NEO1Q92859 1461 aa22.52■■□□□ 1.2
CAPN3-207ENST00000397200 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.52■■□□□ 1.2
CAPN3-207ENST00000397200 AKNAQ7Z591 1439 aa22.51■■□□□ 1.19
CAPN3-207ENST00000397200 ABCC1P33527 1531 aa22.5■■□□□ 1.19
CAPN3-207ENST00000397200 ADGRL1O94910 1474 aa22.48■■□□□ 1.19
CAPN3-207ENST00000397200 SYCP2Q9BX26 1530 aa22.48■■□□□ 1.19
CAPN3-207ENST00000397200 KIAA1107Q9UPP5 1409 aa22.47■■□□□ 1.19
CAPN3-207ENST00000397200 HNRNPMP52272 730 aaKnown RBP eCLIP22.45■■□□□ 1.18
CAPN3-207ENST00000397200 DNMT1P26358 1616 aaKnown RBP22.45■■□□□ 1.18
CAPN3-207ENST00000397200 ARHGEF5Q12774 1597 aa22.44■■□□□ 1.18
CAPN3-207ENST00000397200 SCAPERQ9BY12 1400 aa22.44■■□□□ 1.18
CAPN3-207ENST00000397200 ARHGEF12Q9NZN5 1544 aa22.43■■□□□ 1.18
CAPN3-207ENST00000397200 MBD5Q9P267 1494 aa22.43■■□□□ 1.18
CAPN3-207ENST00000397200 ITGAEP38570 1179 aa22.41■■□□□ 1.18
CAPN3-207ENST00000397200 CCDC141Q6ZP82 1450 aa22.41■■□□□ 1.18
CAPN3-207ENST00000397200 DAPK1P53355 1430 aa22.4■■□□□ 1.18
CAPN3-207ENST00000397200 RSPH4AQ5TD94 716 aa22.4■■□□□ 1.18
CAPN3-207ENST00000397200 CROCC2H7BZ55 1655 aa22.4■■□□□ 1.18
CAPN3-207ENST00000397200 ABCC5O15440 1437 aa22.39■■□□□ 1.17
CAPN3-207ENST00000397200 DENND4BO75064 1496 aaPredicted RBP22.38■■□□□ 1.17
CAPN3-207ENST00000397200 TRAPPC8Q9Y2L5 1435 aa22.38■■□□□ 1.17
CAPN3-207ENST00000397200 POGZQ7Z3K3 1410 aa22.37■■□□□ 1.17
CAPN3-207ENST00000397200 ZNF518AQ6AHZ1 1483 aa22.35■■□□□ 1.17
CAPN3-207ENST00000397200 SHANK2Q9UPX8 1470 aa22.34■■□□□ 1.17
CAPN3-207ENST00000397200 RICTORQ6R327 1708 aa22.34■■□□□ 1.17
CAPN3-207ENST00000397200 TSPY4P0CV99 314 aa22.34■■□□□ 1.17
CAPN3-207ENST00000397200 TSPY10P0CW01 314 aa22.34■■□□□ 1.17
CAPN3-207ENST00000397200 AFAP1Q8N556 730 aa22.33■■□□□ 1.17
CAPN3-207ENST00000397200 PTPRKQ15262 1439 aa22.32■■□□□ 1.16
CAPN3-207ENST00000397200 C9orf84Q5VXU9 1444 aa22.31■■□□□ 1.16
CAPN3-207ENST00000397200 ADGBQ8N7X0 1667 aa22.31■■□□□ 1.16
CAPN3-207ENST00000397200 KDM5CP41229 1560 aa22.31■■□□□ 1.16
CAPN3-207ENST00000397200 MAST1Q9Y2H9 1570 aa22.31■■□□□ 1.16
CAPN3-207ENST00000397200 RAPGEF3O95398 923 aa22.31■■□□□ 1.16
CAPN3-207ENST00000397200 FRMPD1Q5SYB0 1578 aa22.3■■□□□ 1.16
CAPN3-207ENST00000397200 CHIC2Q9UKJ5 165 aa22.3■■□□□ 1.16
CAPN3-207ENST00000397200 SPAG9O60271 1321 aaKnown RBP22.29■■□□□ 1.16
CAPN3-207ENST00000397200 KDM6BO15054 1643 aa22.29■■□□□ 1.16
CAPN3-207ENST00000397200 COL17A1Q9UMD9 1497 aaPredicted RBP22.28■■□□□ 1.16
CAPN3-207ENST00000397200 HECW2Q9P2P5 1572 aa22.26■■□□□ 1.15
CAPN3-207ENST00000397200 INO80Q9ULG1 1556 aaPredicted RBP22.26■■□□□ 1.15
CAPN3-207ENST00000397200 ZFYVE16Q7Z3T8 1539 aa22.26■■□□□ 1.15
CAPN3-207ENST00000397200 ADGRL2O95490 1459 aa22.25■■□□□ 1.15
CAPN3-207ENST00000397200 MYT1LQ9UL68 1186 aa22.25■■□□□ 1.15
CAPN3-207ENST00000397200 ATP7AQ04656 1500 aa22.25■■□□□ 1.15
CAPN3-207ENST00000397200 RTEL1-TNFRSF6BF6WH68 1400 aa22.25■■□□□ 1.15
CAPN3-207ENST00000397200 ZMYM4Q5VZL5 1548 aa22.24■■□□□ 1.15
CAPN3-207ENST00000397200 ROCK1Q13464 1354 aa22.24■■□□□ 1.15
CAPN3-207ENST00000397200 ANKRD30AQ9BXX3 1397 aa22.24■■□□□ 1.15
CAPN3-207ENST00000397200 MLH3Q9UHC1 1453 aa22.23■■□□□ 1.15
CAPN3-207ENST00000397200 KIDINS220Q9ULH0 1771 aa22.23■■□□□ 1.15
CAPN3-207ENST00000397200 CCER1Q8TC90 406 aaPredicted RBP22.23■■□□□ 1.15
CAPN3-207ENST00000397200 PLXNC1O60486 1568 aa22.22■■□□□ 1.15
CAPN3-207ENST00000397200 NCOA1Q15788 1441 aa22.21■■□□□ 1.15
CAPN3-207ENST00000397200 RRP7BPQ9NSQ0 103 aa22.2■■□□□ 1.14
CAPN3-207ENST00000397200 MAGI2Q86UL8 1455 aa22.19■■□□□ 1.14
CAPN3-207ENST00000397200 GCC2Q8IWJ2 1684 aa22.18■■□□□ 1.14
CAPN3-207ENST00000397200 HFM1A2PYH4 1435 aa22.18■■□□□ 1.14
CAPN3-207ENST00000397200 KIF15Q9NS87 1388 aa22.17■■□□□ 1.14
CAPN3-207ENST00000397200 ABCA6Q8N139 1617 aa22.16■■□□□ 1.14
CAPN3-207ENST00000397200 NAIPQ13075 1403 aa22.15■■□□□ 1.14
CAPN3-207ENST00000397200 DIP2CQ9Y2E4 1556 aa22.14■■□□□ 1.14
CAPN3-207ENST00000397200 YEATS2Q9ULM3 1422 aa22.13■■□□□ 1.13
CAPN3-207ENST00000397200 DUOX2Q9NRD8 1548 aa22.13■■□□□ 1.13
CAPN3-207ENST00000397200 SETD5Q9C0A6 1442 aa22.13■■□□□ 1.13
CAPN3-207ENST00000397200 ARHGEF40Q8TER5 1519 aa22.12■■□□□ 1.13
CAPN3-207ENST00000397200 ANKRD50Q9ULJ7 1429 aa22.09■■□□□ 1.13
CAPN3-207ENST00000397200 A2MP01023 1474 aa22.08■■□□□ 1.13
CAPN3-207ENST00000397200 ATP10AO60312 1499 aa22.08■■□□□ 1.12
CAPN3-207ENST00000397200 ERBINQ96RT1 1412 aa22.07■■□□□ 1.12
CAPN3-207ENST00000397200 DHX29Q7Z478 1369 aaKnown RBP22.07■■□□□ 1.12
CAPN3-207ENST00000397200 RAB3GAP2Q9H2M9 1393 aa22.06■■□□□ 1.12
CAPN3-207ENST00000397200 REREQ9P2R6 1566 aa22.03■■□□□ 1.12
CAPN3-207ENST00000397200 EIF2AK4Q9P2K8 1649 aaKnown RBP22.03■■□□□ 1.12
CAPN3-207ENST00000397200 BCORL1Q5H9F3 1711 aa21.98■■□□□ 1.11
CAPN3-207ENST00000397200 KIF3BO15066 747 aa21.97■■□□□ 1.11
CAPN3-207ENST00000397200 ACIN1Q9UKV3 1341 aaKnown RBP21.96■■□□□ 1.11
CAPN3-207ENST00000397200 SIGLEC1Q9BZZ2 1709 aa21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms