RNA–Protein interactions for RNA: ENST00000397099.1

SEC13-204, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 4

Gene SEC13, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-204ENST00000397099 ARHGEF40Q8TER5 1519 aa22.29■■□□□ 1.16
SEC13-204ENST00000397099 ARHGAP5Q13017 1502 aa22.28■■□□□ 1.16
SEC13-204ENST00000397099 HECW2Q9P2P5 1572 aa22.28■■□□□ 1.16
SEC13-204ENST00000397099 SCAPERQ9BY12 1400 aa22.27■■□□□ 1.16
SEC13-204ENST00000397099 PREX2Q70Z35 1606 aa22.27■■□□□ 1.16
SEC13-204ENST00000397099 POGZQ7Z3K3 1410 aa22.25■■□□□ 1.15
SEC13-204ENST00000397099 CDC42BPBQ9Y5S2 1711 aa22.25■■□□□ 1.15
SEC13-204ENST00000397099 ZFYVE16Q7Z3T8 1539 aa22.24■■□□□ 1.15
SEC13-204ENST00000397099 ADAMTSL3P82987 1691 aa22.23■■□□□ 1.15
SEC13-204ENST00000397099 ZNF518AQ6AHZ1 1483 aa22.22■■□□□ 1.15
SEC13-204ENST00000397099 BCORL1Q5H9F3 1711 aa22.22■■□□□ 1.15
SEC13-204ENST00000397099 MTUS2Q5JR59 1369 aa22.22■■□□□ 1.15
SEC13-204ENST00000397099 YEATS2Q9ULM3 1422 aa22.22■■□□□ 1.15
SEC13-204ENST00000397099 PTPRMP28827 1452 aa22.22■■□□□ 1.15
SEC13-204ENST00000397099 CDC42BPAQ5VT25 1732 aa22.21■■□□□ 1.15
SEC13-204ENST00000397099 LOC105371045A0A1W2PR82 267 aa22.2■■□□□ 1.14
SEC13-204ENST00000397099 MADDQ8WXG6 1647 aa22.18■■□□□ 1.14
SEC13-204ENST00000397099 EHBP1L1Q8N3D4 1523 aa22.18■■□□□ 1.14
SEC13-204ENST00000397099 MYT1LQ9UL68 1186 aa22.17■■□□□ 1.14
SEC13-204ENST00000397099 VPS8Q8N3P4 1428 aa22.15■■□□□ 1.14
SEC13-204ENST00000397099 KDM5CP41229 1560 aa22.15■■□□□ 1.14
SEC13-204ENST00000397099 ABCC1P33527 1531 aa22.15■■□□□ 1.14
SEC13-204ENST00000397099 MLECQ14165 292 aa22.14■■□□□ 1.13
SEC13-204ENST00000397099 GPATCH8Q9UKJ3 1502 aaKnown RBP22.13■■□□□ 1.13
SEC13-204ENST00000397099 CCNB3Q8WWL7 1395 aa22.12■■□□□ 1.13
SEC13-204ENST00000397099 PLEKHH2Q8IVE3 1493 aa22.12■■□□□ 1.13
SEC13-204ENST00000397099 PLPPR3Q6T4P5 718 aa22.12■■□□□ 1.13
SEC13-204ENST00000397099 RIMS1Q86UR5 1692 aaKnown RBP22.11■■□□□ 1.13
SEC13-204ENST00000397099 ITSN2Q9NZM3 1697 aa22.11■■□□□ 1.13
SEC13-204ENST00000397099 ATP10AO60312 1499 aa22.11■■□□□ 1.13
SEC13-204ENST00000397099 AFAP1Q8N556 730 aa22.11■■□□□ 1.13
SEC13-204ENST00000397099 MLH3Q9UHC1 1453 aa22.09■■□□□ 1.13
SEC13-204ENST00000397099 C9orf84Q5VXU9 1444 aa22.09■■□□□ 1.13
SEC13-204ENST00000397099 SIGLEC1Q9BZZ2 1709 aa22.09■■□□□ 1.13
SEC13-204ENST00000397099 TIAM1Q13009 1591 aa22.08■■□□□ 1.13
SEC13-204ENST00000397099 KIAA1107Q9UPP5 1409 aa22.08■■□□□ 1.13
SEC13-204ENST00000397099 MAP3K1Q13233 1512 aa22.08■■□□□ 1.13
SEC13-204ENST00000397099 CFDP1Q9UEE9 299 aaPredicted RBP22.08■■□□□ 1.13
SEC13-204ENST00000397099 SUPT6HQ7KZ85 1726 aaKnown RBP22.08■■□□□ 1.12
SEC13-204ENST00000397099 SAMD9LQ8IVG5 1584 aa22.05■■□□□ 1.12
SEC13-204ENST00000397099 ZNF777Q9ULD5 760 aaPredicted RBP22.05■■□□□ 1.12
SEC13-204ENST00000397099 REREQ9P2R6 1566 aa22.04■■□□□ 1.12
SEC13-204ENST00000397099 ARHGEF12Q9NZN5 1544 aa22.03■■□□□ 1.12
SEC13-204ENST00000397099 TRAPPC8Q9Y2L5 1435 aa22.02■■□□□ 1.12
SEC13-204ENST00000397099 FER1L4A9Z1Z3 1794 aa22.01■■□□□ 1.11
SEC13-204ENST00000397099 SYCP2Q9BX26 1530 aa22.01■■□□□ 1.11
SEC13-204ENST00000397099 DIP2CQ9Y2E4 1556 aa21.99■■□□□ 1.11
SEC13-204ENST00000397099 NCOA2Q15596 1464 aa21.99■■□□□ 1.11
SEC13-204ENST00000397099 LRRC9Q6ZRR7 1453 aa21.99■■□□□ 1.11
SEC13-204ENST00000397099 LMTK3Q96Q04 1460 aa21.97■■□□□ 1.11
SEC13-204ENST00000397099 KIDINS220Q9ULH0 1771 aa21.97■■□□□ 1.11
SEC13-204ENST00000397099 ABCA6Q8N139 1617 aa21.97■■□□□ 1.11
SEC13-204ENST00000397099 APLP2Q06481 763 aa21.96■■□□□ 1.11
SEC13-204ENST00000397099 ILDR1Q86SU0 546 aaPredicted RBP21.96■■□□□ 1.11
SEC13-204ENST00000397099 SPAG9O60271 1321 aaKnown RBP21.96■■□□□ 1.11
SEC13-204ENST00000397099 AGLP35573 1532 aa21.96■■□□□ 1.11
SEC13-204ENST00000397099 HNRNPMP52272 730 aaKnown RBP eCLIP21.95■■□□□ 1.1
SEC13-204ENST00000397099 RSPH4AQ5TD94 716 aa21.94■■□□□ 1.1
SEC13-204ENST00000397099 ATP7AQ04656 1500 aa21.91■■□□□ 1.1
SEC13-204ENST00000397099 HSPA2P54652 639 aa21.91■■□□□ 1.1
SEC13-204ENST00000397099 INO80Q9ULG1 1556 aaPredicted RBP21.91■■□□□ 1.1
SEC13-204ENST00000397099 ESF1Q9H501 851 aaKnown RBP21.9■■□□□ 1.1
SEC13-204ENST00000397099 CEBPAP49715 358 aaPredicted RBP21.89■■□□□ 1.09
SEC13-204ENST00000397099 MBD5Q9P267 1494 aa21.89■■□□□ 1.09
SEC13-204ENST00000397099 RTEL1-TNFRSF6BF6WH68 1400 aa21.89■■□□□ 1.09
SEC13-204ENST00000397099 ADGBQ8N7X0 1667 aa21.86■■□□□ 1.09
SEC13-204ENST00000397099 CAMSAP2Q08AD1 1489 aa21.86■■□□□ 1.09
SEC13-204ENST00000397099 MIA2Q96PC5 1412 aa21.86■■□□□ 1.09
SEC13-204ENST00000397099 CCDC141Q6ZP82 1450 aa21.85■■□□□ 1.09
SEC13-204ENST00000397099 ZNF644Q9H582 1327 aaPredicted RBP21.84■■□□□ 1.09
SEC13-204ENST00000397099 ARHGEF5Q12774 1597 aa21.84■■□□□ 1.09
SEC13-204ENST00000397099 MYOM3Q5VTT5 1437 aa21.82■■□□□ 1.08
SEC13-204ENST00000397099 CNTLNQ9NXG0 1405 aa21.82■■□□□ 1.08
SEC13-204ENST00000397099 KANK4Q5T7N3 995 aaPredicted RBP21.82■■□□□ 1.08
SEC13-204ENST00000397099 A2MP01023 1474 aa21.82■■□□□ 1.08
SEC13-204ENST00000397099 PLXNC1O60486 1568 aa21.82■■□□□ 1.08
SEC13-204ENST00000397099 PREX1Q8TCU6 1659 aa21.79■■□□□ 1.08
SEC13-204ENST00000397099 TSPY4P0CV99 314 aa21.79■■□□□ 1.08
SEC13-204ENST00000397099 TSPY10P0CW01 314 aa21.79■■□□□ 1.08
SEC13-204ENST00000397099 SETD1BQ9UPS6 1966 aaKnown RBP21.78■■□□□ 1.08
SEC13-204ENST00000397099 PPP6R1Q9UPN7 881 aa21.78■■□□□ 1.08
SEC13-204ENST00000397099 UHRF1BP1Q6BDS2 1440 aa21.77■■□□□ 1.08
SEC13-204ENST00000397099 C3P01024 1663 aa21.75■■□□□ 1.07
SEC13-204ENST00000397099 MROH2AA6NES4 1674 aa21.75■■□□□ 1.07
SEC13-204ENST00000397099 DHX29Q7Z478 1369 aaKnown RBP21.74■■□□□ 1.07
SEC13-204ENST00000397099 MAST1Q9Y2H9 1570 aa21.73■■□□□ 1.07
SEC13-204ENST00000397099 GGT6Q6P531 493 aa21.71■■□□□ 1.07
SEC13-204ENST00000397099 FBXO41Q8TF61 875 aa21.7■■□□□ 1.06
SEC13-204ENST00000397099 FAM135AQ9P2D6 1515 aa21.7■■□□□ 1.06
SEC13-204ENST00000397099 PTPN23Q9H3S7 1636 aa21.68■■□□□ 1.06
SEC13-204ENST00000397099 ZMYM3Q14202 1370 aa21.66■■□□□ 1.06
SEC13-204ENST00000397099 NPATQ14207 1427 aa21.65■■□□□ 1.06
SEC13-204ENST00000397099 FGD6Q6ZV73 1430 aa21.65■■□□□ 1.06
SEC13-204ENST00000397099 CLTCQ00610 1675 aaKnown RBP21.64■■□□□ 1.05
SEC13-204ENST00000397099 DMRT2Q9Y5R5 561 aa21.64■■□□□ 1.05
SEC13-204ENST00000397099 TCOF1Q13428 1488 aaKnown RBP21.64■■□□□ 1.05
SEC13-204ENST00000397099 SHANK2Q9UPX8 1470 aa21.64■■□□□ 1.05
SEC13-204ENST00000397099 CROCC2H7BZ55 1655 aa21.61■■□□□ 1.05
SEC13-204ENST00000397099 KIF3BO15066 747 aa21.61■■□□□ 1.05
SEC13-204ENST00000397099 EIF2AK4Q9P2K8 1649 aaKnown RBP21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms