RNA–Protein interactions for RNA: ENST00000396082.2

UPK3A-202, Transcript of uroplakin 3A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene UPK3A, Length 627 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3A-202ENST00000396082 PREX2Q70Z35 1606 aa27.89■■■□□ 2.06
UPK3A-202ENST00000396082 MTUS2Q5JR59 1369 aa27.88■■■□□ 2.05
UPK3A-202ENST00000396082 CDC42BPBQ9Y5S2 1711 aa27.88■■■□□ 2.05
UPK3A-202ENST00000396082 POGZQ7Z3K3 1410 aa27.85■■■□□ 2.05
UPK3A-202ENST00000396082 ZMYM4Q5VZL5 1548 aa27.85■■■□□ 2.05
UPK3A-202ENST00000396082 ARHGEF40Q8TER5 1519 aa27.85■■■□□ 2.05
UPK3A-202ENST00000396082 CDC42BPAQ5VT25 1732 aa27.84■■■□□ 2.05
UPK3A-202ENST00000396082 VPS8Q8N3P4 1428 aa27.82■■■□□ 2.04
UPK3A-202ENST00000396082 EHBP1L1Q8N3D4 1523 aa27.82■■■□□ 2.04
UPK3A-202ENST00000396082 ZFYVE16Q7Z3T8 1539 aa27.81■■■□□ 2.04
UPK3A-202ENST00000396082 ZNF518AQ6AHZ1 1483 aa27.77■■■□□ 2.04
UPK3A-202ENST00000396082 MAGI2Q86UL8 1455 aa27.77■■■□□ 2.04
UPK3A-202ENST00000396082 ARID4BQ4LE39 1312 aaPredicted RBP27.77■■■□□ 2.04
UPK3A-202ENST00000396082 CCNB3Q8WWL7 1395 aa27.75■■■□□ 2.03
UPK3A-202ENST00000396082 ABCC1P33527 1531 aa27.75■■■□□ 2.03
UPK3A-202ENST00000396082 GPATCH8Q9UKJ3 1502 aaKnown RBP27.74■■■□□ 2.03
UPK3A-202ENST00000396082 ZNF777Q9ULD5 760 aaPredicted RBP27.74■■■□□ 2.03
UPK3A-202ENST00000396082 YEATS2Q9ULM3 1422 aa27.74■■■□□ 2.03
UPK3A-202ENST00000396082 TIAM1Q13009 1591 aa27.73■■■□□ 2.03
UPK3A-202ENST00000396082 ITSN2Q9NZM3 1697 aa27.72■■■□□ 2.03
UPK3A-202ENST00000396082 MYT1LQ9UL68 1186 aa27.72■■■□□ 2.03
UPK3A-202ENST00000396082 KDM5CP41229 1560 aa27.69■■■□□ 2.02
UPK3A-202ENST00000396082 AFAP1Q8N556 730 aa27.69■■■□□ 2.02
UPK3A-202ENST00000396082 CFDP1Q9UEE9 299 aaPredicted RBP27.69■■■□□ 2.02
UPK3A-202ENST00000396082 SAMD9LQ8IVG5 1584 aa27.68■■■□□ 2.02
UPK3A-202ENST00000396082 HECW2Q9P2P5 1572 aa27.68■■■□□ 2.02
UPK3A-202ENST00000396082 BCORL1Q5H9F3 1711 aa27.67■■■□□ 2.02
UPK3A-202ENST00000396082 SUPT6HQ7KZ85 1726 aaKnown RBP27.67■■■□□ 2.02
UPK3A-202ENST00000396082 ARHGEF12Q9NZN5 1544 aa27.67■■■□□ 2.02
UPK3A-202ENST00000396082 TRAPPC8Q9Y2L5 1435 aa27.65■■■□□ 2.02
UPK3A-202ENST00000396082 ADAMTSL3P82987 1691 aa27.65■■■□□ 2.02
UPK3A-202ENST00000396082 SYCP2Q9BX26 1530 aa27.64■■■□□ 2.02
UPK3A-202ENST00000396082 ATP10AO60312 1499 aa27.63■■■□□ 2.01
UPK3A-202ENST00000396082 C9orf84Q5VXU9 1444 aa27.62■■■□□ 2.01
UPK3A-202ENST00000396082 NCOA2Q15596 1464 aa27.62■■■□□ 2.01
UPK3A-202ENST00000396082 PLEKHH2Q8IVE3 1493 aa27.62■■■□□ 2.01
UPK3A-202ENST00000396082 LRRC9Q6ZRR7 1453 aa27.6■■■□□ 2.01
UPK3A-202ENST00000396082 MLH3Q9UHC1 1453 aa27.59■■■□□ 2.01
UPK3A-202ENST00000396082 SIGLEC1Q9BZZ2 1709 aa27.59■■■□□ 2.01
UPK3A-202ENST00000396082 MADDQ8WXG6 1647 aa27.59■■■□□ 2.01
UPK3A-202ENST00000396082 MAP3K1Q13233 1512 aa27.58■■■□□ 2.01
UPK3A-202ENST00000396082 DIP2CQ9Y2E4 1556 aa27.57■■■□□ 2
UPK3A-202ENST00000396082 HNRNPMP52272 730 aaKnown RBP eCLIP27.57■■■□□ 2
UPK3A-202ENST00000396082 APLP2Q06481 763 aa27.57■■■□□ 2
UPK3A-202ENST00000396082 KIAA1107Q9UPP5 1409 aa27.56■■■□□ 2
UPK3A-202ENST00000396082 ABCA6Q8N139 1617 aa27.56■■■□□ 2
UPK3A-202ENST00000396082 MLECQ14165 292 aa27.54■■■□□ 2
UPK3A-202ENST00000396082 PTPRMP28827 1452 aa27.53■■■□□ 2
UPK3A-202ENST00000396082 KIDINS220Q9ULH0 1771 aa27.53■■■□□ 2
UPK3A-202ENST00000396082 RIMS1Q86UR5 1692 aaKnown RBP27.52■■■□□ 2
UPK3A-202ENST00000396082 SPAG9O60271 1321 aaKnown RBP27.51■■□□□ 1.99
UPK3A-202ENST00000396082 ZNF644Q9H582 1327 aaPredicted RBP27.5■■□□□ 1.99
UPK3A-202ENST00000396082 KANK4Q5T7N3 995 aaPredicted RBP27.5■■□□□ 1.99
UPK3A-202ENST00000396082 REREQ9P2R6 1566 aa27.48■■□□□ 1.99
UPK3A-202ENST00000396082 FER1L4A9Z1Z3 1794 aa27.48■■□□□ 1.99
UPK3A-202ENST00000396082 ATP7AQ04656 1500 aa27.46■■□□□ 1.99
UPK3A-202ENST00000396082 CAMSAP2Q08AD1 1489 aa27.45■■□□□ 1.99
UPK3A-202ENST00000396082 INO80Q9ULG1 1556 aaPredicted RBP27.43■■□□□ 1.98
UPK3A-202ENST00000396082 MBD5Q9P267 1494 aa27.41■■□□□ 1.98
UPK3A-202ENST00000396082 PLPPR3Q6T4P5 718 aa27.41■■□□□ 1.98
UPK3A-202ENST00000396082 AGLP35573 1532 aa27.39■■□□□ 1.98
UPK3A-202ENST00000396082 CCDC141Q6ZP82 1450 aa27.38■■□□□ 1.97
UPK3A-202ENST00000396082 MYOM3Q5VTT5 1437 aa27.36■■□□□ 1.97
UPK3A-202ENST00000396082 ADGBQ8N7X0 1667 aa27.33■■□□□ 1.97
UPK3A-202ENST00000396082 RSPH4AQ5TD94 716 aa27.33■■□□□ 1.97
UPK3A-202ENST00000396082 A2MP01023 1474 aa27.32■■□□□ 1.96
UPK3A-202ENST00000396082 ESF1Q9H501 851 aaKnown RBP27.32■■□□□ 1.96
UPK3A-202ENST00000396082 MIA2Q96PC5 1412 aa27.32■■□□□ 1.96
UPK3A-202ENST00000396082 ARHGEF5Q12774 1597 aa27.31■■□□□ 1.96
UPK3A-202ENST00000396082 RTEL1-TNFRSF6BF6WH68 1400 aa27.31■■□□□ 1.96
UPK3A-202ENST00000396082 PLXNC1O60486 1568 aa27.29■■□□□ 1.96
UPK3A-202ENST00000396082 TSPY4P0CV99 314 aa27.26■■□□□ 1.95
UPK3A-202ENST00000396082 TSPY10P0CW01 314 aa27.26■■□□□ 1.95
UPK3A-202ENST00000396082 PTPN23Q9H3S7 1636 aa27.22■■□□□ 1.95
UPK3A-202ENST00000396082 CEBPAP49715 358 aaPredicted RBP27.21■■□□□ 1.95
UPK3A-202ENST00000396082 CNTLNQ9NXG0 1405 aa27.21■■□□□ 1.95
UPK3A-202ENST00000396082 LMTK3Q96Q04 1460 aa27.19■■□□□ 1.94
UPK3A-202ENST00000396082 C3P01024 1663 aa27.18■■□□□ 1.94
UPK3A-202ENST00000396082 GGT6Q6P531 493 aa27.18■■□□□ 1.94
UPK3A-202ENST00000396082 DHX29Q7Z478 1369 aaKnown RBP27.18■■□□□ 1.94
UPK3A-202ENST00000396082 FGD6Q6ZV73 1430 aa27.17■■□□□ 1.94
UPK3A-202ENST00000396082 MAST1Q9Y2H9 1570 aa27.17■■□□□ 1.94
UPK3A-202ENST00000396082 MROH2AA6NES4 1674 aa27.14■■□□□ 1.93
UPK3A-202ENST00000396082 CLTCQ00610 1675 aaKnown RBP27.14■■□□□ 1.93
UPK3A-202ENST00000396082 PREX1Q8TCU6 1659 aa27.14■■□□□ 1.93
UPK3A-202ENST00000396082 KIF3BO15066 747 aa27.11■■□□□ 1.93
UPK3A-202ENST00000396082 TCOF1Q13428 1488 aaKnown RBP27.11■■□□□ 1.93
UPK3A-202ENST00000396082 CROCC2H7BZ55 1655 aa27.11■■□□□ 1.93
UPK3A-202ENST00000396082 DNMT1P26358 1616 aaKnown RBP27.08■■□□□ 1.93
UPK3A-202ENST00000396082 SETD1BQ9UPS6 1966 aaKnown RBP27.08■■□□□ 1.92
UPK3A-202ENST00000396082 SHANK2Q9UPX8 1470 aa27.07■■□□□ 1.92
UPK3A-202ENST00000396082 HSPA2P54652 639 aa27.07■■□□□ 1.92
UPK3A-202ENST00000396082 PPP6R1Q9UPN7 881 aa27.07■■□□□ 1.92
UPK3A-202ENST00000396082 ABCC5O15440 1437 aa27.07■■□□□ 1.92
UPK3A-202ENST00000396082 DAPK1P53355 1430 aa27.07■■□□□ 1.92
UPK3A-202ENST00000396082 ZMYM3Q14202 1370 aa27.06■■□□□ 1.92
UPK3A-202ENST00000396082 UHRF1BP1Q6BDS2 1440 aa27.06■■□□□ 1.92
UPK3A-202ENST00000396082 FAM50AQ14320 339 aaKnown RBP27.03■■□□□ 1.92
UPK3A-202ENST00000396082 EIF2AK4Q9P2K8 1649 aaKnown RBP27.01■■□□□ 1.91
UPK3A-202ENST00000396082 DUOX2Q9NRD8 1548 aa27■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 1223 ms