RNA–Protein interactions for RNA: ENST00000395969.6

VPS41-203, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5 BASIC

Gene VPS41, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-203ENST00000395969 KANK4Q5T7N3 995 aaPredicted RBP8.09□□□□□ -1.11
VPS41-203ENST00000395969 ATP10BO94823 1461 aa8.09□□□□□ -1.11
VPS41-203ENST00000395969 ABCA9Q8IUA7 1624 aa8.09□□□□□ -1.11
VPS41-203ENST00000395969 MAPKBP1O60336 1514 aa8.09□□□□□ -1.11
VPS41-203ENST00000395969 NEURL4Q96JN8 1562 aa8.08□□□□□ -1.12
VPS41-203ENST00000395969 CDK13Q14004 1512 aaKnown RBP8.08□□□□□ -1.12
VPS41-203ENST00000395969 UACAQ9BZF9 1416 aa8.07□□□□□ -1.12
VPS41-203ENST00000395969 GPATCH8Q9UKJ3 1502 aaKnown RBP8.07□□□□□ -1.12
VPS41-203ENST00000395969 UNC13BO14795 1591 aa8.06□□□□□ -1.12
VPS41-203ENST00000395969 CFAP74Q9C0B2 1584 aa8.06□□□□□ -1.12
VPS41-203ENST00000395969 MAGI2Q86UL8 1455 aa8.06□□□□□ -1.12
VPS41-203ENST00000395969 TIMELESSQ9UNS1 1208 aa8.06□□□□□ -1.12
VPS41-203ENST00000395969 KIAA1107Q9UPP5 1409 aa8.06□□□□□ -1.12
VPS41-203ENST00000395969 PRG4Q92954 1404 aaPredicted RBP8.05□□□□□ -1.12
VPS41-203ENST00000395969 SETD5Q9C0A6 1442 aa8.05□□□□□ -1.12
VPS41-203ENST00000395969 DHX57Q6P158 1386 aaKnown RBP8.05□□□□□ -1.12
VPS41-203ENST00000395969 PLEKHH2Q8IVE3 1493 aa8.05□□□□□ -1.12
VPS41-203ENST00000395969 DEPDC5O75140 1603 aa8.04□□□□□ -1.12
VPS41-203ENST00000395969 GTF3C3Q9Y5Q9 886 aa8.04□□□□□ -1.12
VPS41-203ENST00000395969 PLB1Q6P1J6 1458 aa8.04□□□□□ -1.12
VPS41-203ENST00000395969 GLI2P10070 1586 aa8.04□□□□□ -1.12
VPS41-203ENST00000395969 EIF2AK4Q9P2K8 1649 aaKnown RBP8.04□□□□□ -1.12
VPS41-203ENST00000395969 APLP2Q06481 763 aa8.04□□□□□ -1.12
VPS41-203ENST00000395969 SAMD9LQ8IVG5 1584 aa8.04□□□□□ -1.12
VPS41-203ENST00000395969 NAIPQ13075 1403 aa8.03□□□□□ -1.12
VPS41-203ENST00000395969 JPH4Q96JJ6 628 aa8.03□□□□□ -1.12
VPS41-203ENST00000395969 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.03□□□□□ -1.12
VPS41-203ENST00000395969 PTPRGP23470 1445 aa8.03□□□□□ -1.12
VPS41-203ENST00000395969 DAPK1P53355 1430 aa8.02□□□□□ -1.13
VPS41-203ENST00000395969 CAMSAP2Q08AD1 1489 aa8.02□□□□□ -1.13
VPS41-203ENST00000395969 ERCC6L2Q5T890 1561 aa8.02□□□□□ -1.13
VPS41-203ENST00000395969 MBD5Q9P267 1494 aa8.02□□□□□ -1.13
VPS41-203ENST00000395969 PTPRKQ15262 1439 aa8.02□□□□□ -1.13
VPS41-203ENST00000395969 MTUS2Q5JR59 1369 aa8.01□□□□□ -1.13
VPS41-203ENST00000395969 TTC37Q6PGP7 1564 aa8.01□□□□□ -1.13
VPS41-203ENST00000395969 ABCC1P33527 1531 aa8.01□□□□□ -1.13
VPS41-203ENST00000395969 INO80Q9ULG1 1556 aaPredicted RBP8□□□□□ -1.13
VPS41-203ENST00000395969 CHMP7Q8WUX9 453 aaPredicted RBP8□□□□□ -1.13
VPS41-203ENST00000395969 POLR1AO95602 1720 aaPredicted RBP8□□□□□ -1.13
VPS41-203ENST00000395969 DENND4BO75064 1496 aaPredicted RBP8□□□□□ -1.13
VPS41-203ENST00000395969 CENPBP07199 599 aaPredicted RBP8□□□□□ -1.13
VPS41-203ENST00000395969 ABCC5O15440 1437 aa8□□□□□ -1.13
VPS41-203ENST00000395969 IQGAP3Q86VI3 1631 aa7.99□□□□□ -1.13
VPS41-203ENST00000395969 VWDEQ8N2E2 1590 aa7.99□□□□□ -1.13
VPS41-203ENST00000395969 FAM135AQ9P2D6 1515 aa7.98□□□□□ -1.13
VPS41-203ENST00000395969 RTEL1-TNFRSF6BF6WH68 1400 aa7.98□□□□□ -1.13
VPS41-203ENST00000395969 MAP3K4Q9Y6R4 1608 aa7.98□□□□□ -1.13
VPS41-203ENST00000395969 TEX14Q8IWB6 1497 aa7.98□□□□□ -1.13
VPS41-203ENST00000395969 ATP10AO60312 1499 aa7.98□□□□□ -1.13
VPS41-203ENST00000395969 KDM5CP41229 1560 aa7.97□□□□□ -1.13
VPS41-203ENST00000395969 LAMC1P11047 1609 aa7.97□□□□□ -1.13
VPS41-203ENST00000395969 CDK11AQ9UQ88 783 aaPredicted RBP7.97□□□□□ -1.13
VPS41-203ENST00000395969 RAB3GAP2Q9H2M9 1393 aa7.96□□□□□ -1.13
VPS41-203ENST00000395969 TTBK1Q5TCY1 1321 aaPredicted RBP7.96□□□□□ -1.13
VPS41-203ENST00000395969 TULP1O00294 542 aaPredicted RBP7.96□□□□□ -1.13
VPS41-203ENST00000395969 RNF17Q9BXT8 1623 aaKnown RBP7.96□□□□□ -1.13
VPS41-203ENST00000395969 RSPH4AQ5TD94 716 aa7.96□□□□□ -1.14
VPS41-203ENST00000395969 PLCH2O75038 1416 aa7.96□□□□□ -1.14
VPS41-203ENST00000395969 REREQ9P2R6 1566 aa7.96□□□□□ -1.14
VPS41-203ENST00000395969 KDM6BO15054 1643 aa7.95□□□□□ -1.14
VPS41-203ENST00000395969 NCOA1Q15788 1441 aa7.95□□□□□ -1.14
VPS41-203ENST00000395969 BCL11AQ9H165 835 aa7.95□□□□□ -1.14
VPS41-203ENST00000395969 SLC4A1APQ9BWU0 796 aaKnown RBP7.95□□□□□ -1.14
VPS41-203ENST00000395969 CCDC141Q6ZP82 1450 aa7.95□□□□□ -1.14
VPS41-203ENST00000395969 ARHGEF12Q9NZN5 1544 aa7.94□□□□□ -1.14
VPS41-203ENST00000395969 DUOX2Q9NRD8 1548 aa7.93□□□□□ -1.14
VPS41-203ENST00000395969 ERBINQ96RT1 1412 aa7.93□□□□□ -1.14
VPS41-203ENST00000395969 LMTK2Q8IWU2 1503 aa7.93□□□□□ -1.14
VPS41-203ENST00000395969 ZFYVE16Q7Z3T8 1539 aa7.92□□□□□ -1.14
VPS41-203ENST00000395969 DIEXFQ68CQ4 756 aaKnown RBP7.92□□□□□ -1.14
VPS41-203ENST00000395969 PZPP20742 1482 aa7.92□□□□□ -1.14
VPS41-203ENST00000395969 ZMYM4Q5VZL5 1548 aa7.92□□□□□ -1.14
VPS41-203ENST00000395969 TAOK2Q9UL54 1235 aa7.91□□□□□ -1.14
VPS41-203ENST00000395969 PRDM15P57071 1507 aaPredicted RBP7.91□□□□□ -1.14
VPS41-203ENST00000395969 ZC3H13Q5T200 1668 aaKnown RBP7.9□□□□□ -1.14
VPS41-203ENST00000395969 NEO1Q92859 1461 aa7.89□□□□□ -1.15
VPS41-203ENST00000395969 RPRD2Q5VT52 1461 aaKnown RBP7.89□□□□□ -1.15
VPS41-203ENST00000395969 MROH1Q8NDA8 1641 aa7.89□□□□□ -1.15
VPS41-203ENST00000395969 TET3O43151 1660 aa7.89□□□□□ -1.15
VPS41-203ENST00000395969 RICTORQ6R327 1708 aa7.89□□□□□ -1.15
VPS41-203ENST00000395969 KIAA1210Q9ULL0 1709 aa7.88□□□□□ -1.15
VPS41-203ENST00000395969 PPRC1Q5VV67 1664 aaKnown RBP7.88□□□□□ -1.15
VPS41-203ENST00000395969 YTHDC1Q96MU7 727 aaKnown RBP7.88□□□□□ -1.15
VPS41-203ENST00000395969 UHRF1BP1Q6BDS2 1440 aa7.88□□□□□ -1.15
VPS41-203ENST00000395969 C9orf84Q5VXU9 1444 aa7.87□□□□□ -1.15
VPS41-203ENST00000395969 CEP152O94986 1710 aa7.87□□□□□ -1.15
VPS41-203ENST00000395969 SYCP2Q9BX26 1530 aa7.87□□□□□ -1.15
VPS41-203ENST00000395969 TPRNQ4KMQ1 711 aa7.87□□□□□ -1.15
VPS41-203ENST00000395969 KIDINS220Q9ULH0 1771 aa7.87□□□□□ -1.15
VPS41-203ENST00000395969 IFT172Q9UG01 1749 aa7.87□□□□□ -1.15
VPS41-203ENST00000395969 RIMBP3CA6NJZ7 1639 aa7.86□□□□□ -1.15
VPS41-203ENST00000395969 RIMBP3BA6NNM3 1639 aa7.86□□□□□ -1.15
VPS41-203ENST00000395969 RIMBP3Q9UFD9 1639 aa7.86□□□□□ -1.15
VPS41-203ENST00000395969 MLH3Q9UHC1 1453 aa7.86□□□□□ -1.15
VPS41-203ENST00000395969 ANKRD30AQ9BXX3 1397 aa7.86□□□□□ -1.15
VPS41-203ENST00000395969 ANKRD30BQ9BXX2 1392 aa7.85□□□□□ -1.15
VPS41-203ENST00000395969 PPP4R3CPQ6ZMV5 832 aa7.85□□□□□ -1.15
VPS41-203ENST00000395969 DIP2BQ9P265 1576 aa7.84□□□□□ -1.15
VPS41-203ENST00000395969 ATP7AQ04656 1500 aa7.84□□□□□ -1.15
VPS41-203ENST00000395969 ARHGAP5Q13017 1502 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms