RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 VPS8Q8N3P4 1428 aa37.6■■■■□ 3.61
SHMT1-204ENST00000395682 RICTORQ6R327 1708 aa37.56■■■■□ 3.6
SHMT1-204ENST00000395682 CDC42BPBQ9Y5S2 1711 aa37.53■■■■□ 3.6
SHMT1-204ENST00000395682 POGZQ7Z3K3 1410 aa37.5■■■■□ 3.59
SHMT1-204ENST00000395682 PREX2Q70Z35 1606 aa37.5■■■■□ 3.59
SHMT1-204ENST00000395682 GPATCH8Q9UKJ3 1502 aaKnown RBP37.47■■■■□ 3.59
SHMT1-204ENST00000395682 CCNB3Q8WWL7 1395 aa37.46■■■■□ 3.59
SHMT1-204ENST00000395682 CDC42BPAQ5VT25 1732 aa37.46■■■■□ 3.59
SHMT1-204ENST00000395682 ZNF777Q9ULD5 760 aaPredicted RBP37.45■■■■□ 3.59
SHMT1-204ENST00000395682 AFAP1Q8N556 730 aa37.44■■■■□ 3.58
SHMT1-204ENST00000395682 ZMYM4Q5VZL5 1548 aa37.44■■■■□ 3.58
SHMT1-204ENST00000395682 EHBP1L1Q8N3D4 1523 aa37.44■■■■□ 3.58
SHMT1-204ENST00000395682 CFDP1Q9UEE9 299 aaPredicted RBP37.42■■■■□ 3.58
SHMT1-204ENST00000395682 MAGI2Q86UL8 1455 aa37.4■■■■□ 3.58
SHMT1-204ENST00000395682 TIAM1Q13009 1591 aa37.4■■■■□ 3.58
SHMT1-204ENST00000395682 ARID4BQ4LE39 1312 aaPredicted RBP37.38■■■■□ 3.58
SHMT1-204ENST00000395682 YEATS2Q9ULM3 1422 aa37.38■■■■□ 3.57
SHMT1-204ENST00000395682 ZNF518AQ6AHZ1 1483 aa37.38■■■■□ 3.57
SHMT1-204ENST00000395682 ARHGEF40Q8TER5 1519 aa37.37■■■■□ 3.57
SHMT1-204ENST00000395682 ZFYVE16Q7Z3T8 1539 aa37.36■■■■□ 3.57
SHMT1-204ENST00000395682 ABCC1P33527 1531 aa37.34■■■■□ 3.57
SHMT1-204ENST00000395682 ARHGEF12Q9NZN5 1544 aa37.34■■■■□ 3.57
SHMT1-204ENST00000395682 MYT1LQ9UL68 1186 aa37.33■■■■□ 3.57
SHMT1-204ENST00000395682 TRAPPC8Q9Y2L5 1435 aa37.32■■■■□ 3.56
SHMT1-204ENST00000395682 LRRC9Q6ZRR7 1453 aa37.29■■■■□ 3.56
SHMT1-204ENST00000395682 KANK4Q5T7N3 995 aaPredicted RBP37.29■■■■□ 3.56
SHMT1-204ENST00000395682 MAP3K1Q13233 1512 aa37.28■■■■□ 3.56
SHMT1-204ENST00000395682 HNRNPMP52272 730 aaKnown RBP eCLIP37.28■■■■□ 3.56
SHMT1-204ENST00000395682 SAMD9LQ8IVG5 1584 aa37.28■■■■□ 3.56
SHMT1-204ENST00000395682 NCOA2Q15596 1464 aa37.27■■■■□ 3.56
SHMT1-204ENST00000395682 APLP2Q06481 763 aa37.27■■■■□ 3.56
SHMT1-204ENST00000395682 KDM5CP41229 1560 aa37.26■■■■□ 3.56
SHMT1-204ENST00000395682 ATP10AO60312 1499 aa37.25■■■■□ 3.55
SHMT1-204ENST00000395682 ITSN2Q9NZM3 1697 aa37.25■■■■□ 3.55
SHMT1-204ENST00000395682 SUPT6HQ7KZ85 1726 aaKnown RBP37.24■■■■□ 3.55
SHMT1-204ENST00000395682 ZNF644Q9H582 1327 aaPredicted RBP37.22■■■■□ 3.55
SHMT1-204ENST00000395682 PLEKHH2Q8IVE3 1493 aa37.21■■■■□ 3.55
SHMT1-204ENST00000395682 KIAA1107Q9UPP5 1409 aa37.21■■■■□ 3.55
SHMT1-204ENST00000395682 SYCP2Q9BX26 1530 aa37.2■■■■□ 3.55
SHMT1-204ENST00000395682 MLH3Q9UHC1 1453 aa37.2■■■■□ 3.54
SHMT1-204ENST00000395682 HECW2Q9P2P5 1572 aa37.17■■■■□ 3.54
SHMT1-204ENST00000395682 C9orf84Q5VXU9 1444 aa37.16■■■■□ 3.54
SHMT1-204ENST00000395682 BCORL1Q5H9F3 1711 aa37.15■■■■□ 3.54
SHMT1-204ENST00000395682 ADAMTSL3P82987 1691 aa37.14■■■■□ 3.54
SHMT1-204ENST00000395682 SPAG9O60271 1321 aaKnown RBP37.12■■■■□ 3.53
SHMT1-204ENST00000395682 MLECQ14165 292 aa37.12■■■■□ 3.53
SHMT1-204ENST00000395682 SIGLEC1Q9BZZ2 1709 aa37.11■■■■□ 3.53
SHMT1-204ENST00000395682 DIP2CQ9Y2E4 1556 aa37.08■■■■□ 3.53
SHMT1-204ENST00000395682 KIDINS220Q9ULH0 1771 aa37.04■■■■□ 3.52
SHMT1-204ENST00000395682 ABCA6Q8N139 1617 aa37.04■■■■□ 3.52
SHMT1-204ENST00000395682 MBD5Q9P267 1494 aa37.04■■■■□ 3.52
SHMT1-204ENST00000395682 MADDQ8WXG6 1647 aa37.03■■■■□ 3.52
SHMT1-204ENST00000395682 PTPRMP28827 1452 aa37.02■■■■□ 3.52
SHMT1-204ENST00000395682 CAMSAP2Q08AD1 1489 aa37■■■■□ 3.51
SHMT1-204ENST00000395682 REREQ9P2R6 1566 aa36.97■■■■□ 3.51
SHMT1-204ENST00000395682 RSPH4AQ5TD94 716 aa36.97■■■■□ 3.51
SHMT1-204ENST00000395682 ATP7AQ04656 1500 aa36.95■■■■□ 3.51
SHMT1-204ENST00000395682 MYOM3Q5VTT5 1437 aa36.95■■■■□ 3.51
SHMT1-204ENST00000395682 MIA2Q96PC5 1412 aa36.91■■■■□ 3.5
SHMT1-204ENST00000395682 INO80Q9ULG1 1556 aaPredicted RBP36.91■■■■□ 3.5
SHMT1-204ENST00000395682 RIMS1Q86UR5 1692 aaKnown RBP36.9■■■■□ 3.5
SHMT1-204ENST00000395682 AGLP35573 1532 aa36.89■■■■□ 3.5
SHMT1-204ENST00000395682 CCDC141Q6ZP82 1450 aa36.88■■■■□ 3.5
SHMT1-204ENST00000395682 PLPPR3Q6T4P5 718 aa36.87■■■■□ 3.49
SHMT1-204ENST00000395682 RTEL1-TNFRSF6BF6WH68 1400 aa36.86■■■■□ 3.49
SHMT1-204ENST00000395682 TSPY4P0CV99 314 aa36.85■■■■□ 3.49
SHMT1-204ENST00000395682 TSPY10P0CW01 314 aa36.85■■■■□ 3.49
SHMT1-204ENST00000395682 A2MP01023 1474 aa36.82■■■■□ 3.49
SHMT1-204ENST00000395682 FER1L4A9Z1Z3 1794 aa36.82■■■■□ 3.48
SHMT1-204ENST00000395682 ARHGEF5Q12774 1597 aa36.82■■■■□ 3.48
SHMT1-204ENST00000395682 ESF1Q9H501 851 aaKnown RBP36.78■■■■□ 3.48
SHMT1-204ENST00000395682 CEBPAP49715 358 aaPredicted RBP36.73■■■■□ 3.47
SHMT1-204ENST00000395682 ADGBQ8N7X0 1667 aa36.73■■■■□ 3.47
SHMT1-204ENST00000395682 PLXNC1O60486 1568 aa36.72■■■■□ 3.47
SHMT1-204ENST00000395682 DHX29Q7Z478 1369 aaKnown RBP36.72■■■■□ 3.47
SHMT1-204ENST00000395682 FGD6Q6ZV73 1430 aa36.71■■■■□ 3.47
SHMT1-204ENST00000395682 PTPN23Q9H3S7 1636 aa36.69■■■■□ 3.46
SHMT1-204ENST00000395682 GGT6Q6P531 493 aa36.68■■■■□ 3.46
SHMT1-204ENST00000395682 TCOF1Q13428 1488 aaKnown RBP36.62■■■■□ 3.45
SHMT1-204ENST00000395682 CNTLNQ9NXG0 1405 aa36.61■■■■□ 3.45
SHMT1-204ENST00000395682 KIF3BO15066 747 aa36.61■■■■□ 3.45
SHMT1-204ENST00000395682 PPARGC1BQ86YN6 1023 aaKnown RBP36.61■■■■□ 3.45
SHMT1-204ENST00000395682 MAST1Q9Y2H9 1570 aa36.61■■■■□ 3.45
SHMT1-204ENST00000395682 ABCC5O15440 1437 aa36.59■■■■□ 3.45
SHMT1-204ENST00000395682 PPP6R1Q9UPN7 881 aa36.59■■■■□ 3.45
SHMT1-204ENST00000395682 FAM50AQ14320 339 aaKnown RBP36.56■■■■□ 3.44
SHMT1-204ENST00000395682 LMTK3Q96Q04 1460 aa36.54■■■■□ 3.44
SHMT1-204ENST00000395682 DAPK1P53355 1430 aa36.53■■■■□ 3.44
SHMT1-204ENST00000395682 ZMYM3Q14202 1370 aa36.53■■■■□ 3.44
SHMT1-204ENST00000395682 C3P01024 1663 aa36.5■■■■□ 3.43
SHMT1-204ENST00000395682 SHANK2Q9UPX8 1470 aa36.49■■■■□ 3.43
SHMT1-204ENST00000395682 DNMT1P26358 1616 aaKnown RBP36.48■■■■□ 3.43
SHMT1-204ENST00000395682 RRP7BPQ9NSQ0 103 aa36.48■■■■□ 3.43
SHMT1-204ENST00000395682 CHIC2Q9UKJ5 165 aa36.48■■■■□ 3.43
SHMT1-204ENST00000395682 HSPA2P54652 639 aa36.46■■■■□ 3.43
SHMT1-204ENST00000395682 CROCC2H7BZ55 1655 aa36.45■■■■□ 3.42
SHMT1-204ENST00000395682 CLTCQ00610 1675 aaKnown RBP36.45■■■■□ 3.42
SHMT1-204ENST00000395682 MROH2AA6NES4 1674 aa36.43■■■■□ 3.42
SHMT1-204ENST00000395682 SETD1BQ9UPS6 1966 aaKnown RBP36.43■■■■□ 3.42
SHMT1-204ENST00000395682 KIF15Q9NS87 1388 aa36.42■■■■□ 3.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms