RNA–Protein interactions for RNA: ENST00000393546.8

PDLIM7-204, Transcript of PDZ and LIM domain 7, humanhuman

TSL 3

Gene PDLIM7, Length 671 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-204ENST00000393546 DENND4BO75064 1496 aaPredicted RBP29.8■■■□□ 2.36
PDLIM7-204ENST00000393546 LRRC9Q6ZRR7 1453 aa29.8■■■□□ 2.36
PDLIM7-204ENST00000393546 CDC42BPBQ9Y5S2 1711 aa29.79■■■□□ 2.36
PDLIM7-204ENST00000393546 PREX2Q70Z35 1606 aa29.78■■■□□ 2.36
PDLIM7-204ENST00000393546 GPATCH8Q9UKJ3 1502 aaKnown RBP29.78■■■□□ 2.36
PDLIM7-204ENST00000393546 KANK4Q5T7N3 995 aaPredicted RBP29.78■■■□□ 2.36
PDLIM7-204ENST00000393546 AEBP2Q6ZN18 517 aaPredicted RBP29.78■■■□□ 2.36
PDLIM7-204ENST00000393546 CDC42BPAQ5VT25 1732 aa29.78■■■□□ 2.36
PDLIM7-204ENST00000393546 ADGRL1O94910 1474 aa29.78■■■□□ 2.36
PDLIM7-204ENST00000393546 SCAPERQ9BY12 1400 aa29.77■■■□□ 2.36
PDLIM7-204ENST00000393546 SUPT6HQ7KZ85 1726 aaKnown RBP29.75■■■□□ 2.35
PDLIM7-204ENST00000393546 CFDP1Q9UEE9 299 aaPredicted RBP29.75■■■□□ 2.35
PDLIM7-204ENST00000393546 ZNF777Q9ULD5 760 aaPredicted RBP29.73■■■□□ 2.35
PDLIM7-204ENST00000393546 NCOA2Q15596 1464 aa29.72■■■□□ 2.35
PDLIM7-204ENST00000393546 RICTORQ6R327 1708 aa29.68■■■□□ 2.34
PDLIM7-204ENST00000393546 FRMPD1Q5SYB0 1578 aa29.67■■■□□ 2.34
PDLIM7-204ENST00000393546 POGZQ7Z3K3 1410 aa29.65■■■□□ 2.34
PDLIM7-204ENST00000393546 ITSN2Q9NZM3 1697 aa29.64■■■□□ 2.34
PDLIM7-204ENST00000393546 AFAP1Q8N556 730 aa29.61■■■□□ 2.33
PDLIM7-204ENST00000393546 ABCC1P33527 1531 aa29.61■■■□□ 2.33
PDLIM7-204ENST00000393546 ZNF518AQ6AHZ1 1483 aa29.6■■■□□ 2.33
PDLIM7-204ENST00000393546 PLEKHH2Q8IVE3 1493 aa29.59■■■□□ 2.33
PDLIM7-204ENST00000393546 SAMD9LQ8IVG5 1584 aa29.59■■■□□ 2.33
PDLIM7-204ENST00000393546 HNRNPMP52272 730 aaKnown RBP eCLIP29.58■■■□□ 2.334e-8■■■■■ 27.6
PDLIM7-204ENST00000393546 ARHGEF12Q9NZN5 1544 aa29.58■■■□□ 2.33
PDLIM7-204ENST00000393546 ZMYM4Q5VZL5 1548 aa29.57■■■□□ 2.32
PDLIM7-204ENST00000393546 MAGI2Q86UL8 1455 aa29.57■■■□□ 2.32
PDLIM7-204ENST00000393546 KIAA1107Q9UPP5 1409 aa29.56■■■□□ 2.32
PDLIM7-204ENST00000393546 ZNF644Q9H582 1327 aaPredicted RBP29.56■■■□□ 2.32
PDLIM7-204ENST00000393546 MYT1LQ9UL68 1186 aa29.56■■■□□ 2.32
PDLIM7-204ENST00000393546 TRAPPC8Q9Y2L5 1435 aa29.55■■■□□ 2.32
PDLIM7-204ENST00000393546 SYCP2Q9BX26 1530 aa29.51■■■□□ 2.32
PDLIM7-204ENST00000393546 ZFYVE16Q7Z3T8 1539 aa29.5■■■□□ 2.31
PDLIM7-204ENST00000393546 MYOM3Q5VTT5 1437 aa29.5■■■□□ 2.31
PDLIM7-204ENST00000393546 KDM5CP41229 1560 aa29.5■■■□□ 2.31
PDLIM7-204ENST00000393546 YEATS2Q9ULM3 1422 aa29.48■■■□□ 2.31
PDLIM7-204ENST00000393546 ARHGEF40Q8TER5 1519 aa29.47■■■□□ 2.31
PDLIM7-204ENST00000393546 MIA2Q96PC5 1412 aa29.46■■■□□ 2.31
PDLIM7-204ENST00000393546 CAMSAP2Q08AD1 1489 aa29.45■■■□□ 2.31
PDLIM7-204ENST00000393546 MLH3Q9UHC1 1453 aa29.45■■■□□ 2.31
PDLIM7-204ENST00000393546 SPAG9O60271 1321 aaKnown RBP29.45■■■□□ 2.3
PDLIM7-204ENST00000393546 RSPH4AQ5TD94 716 aa29.44■■■□□ 2.3
PDLIM7-204ENST00000393546 ARID4BQ4LE39 1312 aaPredicted RBP29.44■■■□□ 2.3
PDLIM7-204ENST00000393546 HECW2Q9P2P5 1572 aa29.43■■■□□ 2.3
PDLIM7-204ENST00000393546 MBD5Q9P267 1494 aa29.42■■■□□ 2.3
PDLIM7-204ENST00000393546 KDM4FA0A1W2PPD8 638 aa29.42■■■□□ 2.3
PDLIM7-204ENST00000393546 ATP10AO60312 1499 aa29.42■■■□□ 2.3
PDLIM7-204ENST00000393546 PPARGC1BQ86YN6 1023 aaKnown RBP29.37■■■□□ 2.29
PDLIM7-204ENST00000393546 C9orf84Q5VXU9 1444 aa29.35■■■□□ 2.29
PDLIM7-204ENST00000393546 KIDINS220Q9ULH0 1771 aa29.34■■■□□ 2.29
PDLIM7-204ENST00000393546 TSPY4P0CV99 314 aa29.34■■■□□ 2.29
PDLIM7-204ENST00000393546 TSPY10P0CW01 314 aa29.34■■■□□ 2.29
PDLIM7-204ENST00000393546 CCDC141Q6ZP82 1450 aa29.34■■■□□ 2.29
PDLIM7-204ENST00000393546 FGD6Q6ZV73 1430 aa29.33■■■□□ 2.29
PDLIM7-204ENST00000393546 DIP2CQ9Y2E4 1556 aa29.32■■■□□ 2.28
PDLIM7-204ENST00000393546 ARHGEF5Q12774 1597 aa29.31■■■□□ 2.28
PDLIM7-204ENST00000393546 ATP7AQ04656 1500 aa29.3■■■□□ 2.28
PDLIM7-204ENST00000393546 ABCA6Q8N139 1617 aa29.3■■■□□ 2.28
PDLIM7-204ENST00000393546 PTPN23Q9H3S7 1636 aa29.3■■■□□ 2.28
PDLIM7-204ENST00000393546 RTEL1-TNFRSF6BF6WH68 1400 aa29.29■■■□□ 2.28
PDLIM7-204ENST00000393546 INO80Q9ULG1 1556 aaPredicted RBP29.27■■■□□ 2.28
PDLIM7-204ENST00000393546 TCOF1Q13428 1488 aaKnown RBP29.25■■■□□ 2.27
PDLIM7-204ENST00000393546 MLECQ14165 292 aa29.24■■■□□ 2.27
PDLIM7-204ENST00000393546 REREQ9P2R6 1566 aa29.24■■■□□ 2.27
PDLIM7-204ENST00000393546 BCORL1Q5H9F3 1711 aa29.23■■■□□ 2.27
PDLIM7-204ENST00000393546 SIGLEC1Q9BZZ2 1709 aa29.23■■■□□ 2.27
PDLIM7-204ENST00000393546 FAM50AQ14320 339 aaKnown RBP29.22■■■□□ 2.27
PDLIM7-204ENST00000393546 ADAMTSL3P82987 1691 aa29.18■■■□□ 2.26
PDLIM7-204ENST00000393546 A2MP01023 1474 aa29.18■■■□□ 2.26
PDLIM7-204ENST00000393546 AGLP35573 1532 aa29.17■■■□□ 2.26
PDLIM7-204ENST00000393546 ABCC5O15440 1437 aa29.16■■■□□ 2.26
PDLIM7-204ENST00000393546 ADGBQ8N7X0 1667 aa29.15■■■□□ 2.26
PDLIM7-204ENST00000393546 MAST1Q9Y2H9 1570 aa29.14■■■□□ 2.26
PDLIM7-204ENST00000393546 DAPK1P53355 1430 aa29.13■■■□□ 2.25
PDLIM7-204ENST00000393546 DHX29Q7Z478 1369 aaKnown RBP29.13■■■□□ 2.25
PDLIM7-204ENST00000393546 DNMT1P26358 1616 aaKnown RBP29.11■■■□□ 2.25
PDLIM7-204ENST00000393546 MADDQ8WXG6 1647 aa29.1■■■□□ 2.25
PDLIM7-204ENST00000393546 SHANK2Q9UPX8 1470 aa29.09■■■□□ 2.25
PDLIM7-204ENST00000393546 PLXNC1O60486 1568 aa29.09■■■□□ 2.25
PDLIM7-204ENST00000393546 CHIC2Q9UKJ5 165 aa29.07■■■□□ 2.24
PDLIM7-204ENST00000393546 CROCC2H7BZ55 1655 aa29.06■■■□□ 2.24
PDLIM7-204ENST00000393546 ESF1Q9H501 851 aaKnown RBP29.06■■■□□ 2.24
PDLIM7-204ENST00000393546 PTPRMP28827 1452 aa29.05■■■□□ 2.24
PDLIM7-204ENST00000393546 GGT6Q6P531 493 aa29.04■■■□□ 2.24
PDLIM7-204ENST00000393546 RIMS1Q86UR5 1692 aaKnown RBP29.03■■■□□ 2.24
PDLIM7-204ENST00000393546 RRP7BPQ9NSQ0 103 aa29.03■■■□□ 2.24
PDLIM7-204ENST00000393546 FER1L4A9Z1Z3 1794 aa29.03■■■□□ 2.24
PDLIM7-204ENST00000393546 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.02■■■□□ 2.242e-6■■■■□ 23.1
PDLIM7-204ENST00000393546 KIF3BO15066 747 aa29.02■■■□□ 2.24
PDLIM7-204ENST00000393546 ANKRD30AQ9BXX3 1397 aa29.01■■■□□ 2.23
PDLIM7-204ENST00000393546 KIF15Q9NS87 1388 aa28.99■■■□□ 2.23
PDLIM7-204ENST00000393546 PPP6R1Q9UPN7 881 aa28.98■■■□□ 2.23
PDLIM7-204ENST00000393546 RRBP1Q9P2E9 1410 aaKnown RBP28.97■■■□□ 2.23
PDLIM7-204ENST00000393546 PLPPR3Q6T4P5 718 aa28.97■■■□□ 2.23
PDLIM7-204ENST00000393546 DUOX2Q9NRD8 1548 aa28.97■■■□□ 2.23
PDLIM7-204ENST00000393546 ITGAEP38570 1179 aa28.96■■■□□ 2.23
PDLIM7-204ENST00000393546 NCOA1Q15788 1441 aa28.94■■■□□ 2.22
PDLIM7-204ENST00000393546 CNTLNQ9NXG0 1405 aa28.93■■■□□ 2.22
PDLIM7-204ENST00000393546 ADGRL2O95490 1459 aa28.92■■■□□ 2.22
PDLIM7-204ENST00000393546 PTPRKQ15262 1439 aa28.91■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms