RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 DPY19L2Q6NUT2 758 aa3.87□□□□□ -1.79
RNU6-540P-201ENST00000384622 KRTAP1-3Q8IUG1 177 aa3.87□□□□□ -1.79
RNU6-540P-201ENST00000384622 PLEKHG5O94827 1062 aa3.86□□□□□ -1.79
RNU6-540P-201ENST00000384622 KRTAP9-2Q9BYQ4 174 aa3.85□□□□□ -1.79
RNU6-540P-201ENST00000384622 KRTAP9-6A0A140TA67 174 aa3.84□□□□□ -1.79
RNU6-540P-201ENST00000384622 TK2O00142 265 aa3.84□□□□□ -1.79
RNU6-540P-201ENST00000384622 ARHGAP33O14559 1287 aa3.84□□□□□ -1.79
RNU6-540P-201ENST00000384622 KHSRPQ92945 711 aaKnown RBP eCLIP3.84□□□□□ -1.79
RNU6-540P-201ENST00000384622 ANO8Q9HCE9 1232 aaPredicted RBP3.84□□□□□ -1.79
RNU6-540P-201ENST00000384622 XP32Q5T750 250 aa3.83□□□□□ -1.8
RNU6-540P-201ENST00000384622 POTECB2RU33 542 aa3.81□□□□□ -1.8
RNU6-540P-201ENST00000384622 WFS1O76024 890 aa3.81□□□□□ -1.8
RNU6-540P-201ENST00000384622 FAM181BA6NEQ2 426 aa3.8□□□□□ -1.8
RNU6-540P-201ENST00000384622 PSMG3-AS1Q96PY0 264 aa3.8□□□□□ -1.8
RNU6-540P-201ENST00000384622 PCDHB8Q9UN66 801 aa3.8□□□□□ -1.8
RNU6-540P-201ENST00000384622 SPDYE4A6NLX3 237 aa3.79□□□□□ -1.8
RNU6-540P-201ENST00000384622 ZBTB22O15209 634 aa3.79□□□□□ -1.8
RNU6-540P-201ENST00000384622 WIPF1O43516 503 aa3.79□□□□□ -1.8
RNU6-540P-201ENST00000384622 ILDR1Q86SU0 546 aaPredicted RBP3.79□□□□□ -1.8
RNU6-540P-201ENST00000384622 THSD4Q6ZMP0 1018 aa3.78□□□□□ -1.8
RNU6-540P-201ENST00000384622 SLC4A1APQ9BWU0 796 aaKnown RBP3.78□□□□□ -1.8
RNU6-540P-201ENST00000384622 ITGBL1O95965 494 aaPredicted RBP3.77□□□□□ -1.81
RNU6-540P-201ENST00000384622 DMRTA1Q5VZB9 504 aa3.77□□□□□ -1.81
RNU6-540P-201ENST00000384622 MIER1Q8N108 512 aa3.77□□□□□ -1.81
RNU6-540P-201ENST00000384622 FAM212AQ96EL1 285 aa3.76□□□□□ -1.81
RNU6-540P-201ENST00000384622 EHMT2Q96KQ7 1210 aa3.76□□□□□ -1.81
RNU6-540P-201ENST00000384622 LHX6Q9UPM6 363 aa3.76□□□□□ -1.81
RNU6-540P-201ENST00000384622 PDZRN3Q9UPQ7 1066 aa3.76□□□□□ -1.81
RNU6-540P-201ENST00000384622 NUDT7P0C024 238 aa3.75□□□□□ -1.81
RNU6-540P-201ENST00000384622 PYGBP11216 843 aa3.74□□□□□ -1.81
RNU6-540P-201ENST00000384622 PSEN2P49810 448 aa3.74□□□□□ -1.81
RNU6-540P-201ENST00000384622 LCE3BQ5TA77 95 aa3.73□□□□□ -1.81
RNU6-540P-201ENST00000384622 TMEM92Q6UXU6 159 aa3.73□□□□□ -1.81
RNU6-540P-201ENST00000384622 PRKD2Q9BZL6 878 aa3.73□□□□□ -1.81
RNU6-540P-201ENST00000384622 GOLGA8CPA6NN73 597 aa3.72□□□□□ -1.81
RNU6-540P-201ENST00000384622 NUBP1P53384 320 aa3.72□□□□□ -1.81
RNU6-540P-201ENST00000384622 WNT2BQ93097 391 aa3.72□□□□□ -1.81
RNU6-540P-201ENST00000384622 KCNC4Q03721 635 aa3.71□□□□□ -1.82
RNU6-540P-201ENST00000384622 BTBD11A6QL63 1104 aa3.7□□□□□ -1.82
RNU6-540P-201ENST00000384622 KCTD17Q8N5Z5 321 aa3.69□□□□□ -1.82
RNU6-540P-201ENST00000384622 KRTAP4-8A0A0G2JLE6 195 aa3.68□□□□□ -1.82
RNU6-540P-201ENST00000384622 MYT1Q01538 1121 aa3.68□□□□□ -1.82
RNU6-540P-201ENST00000384622 NFX1Q12986 1120 aaKnown RBP3.68□□□□□ -1.82
RNU6-540P-201ENST00000384622 PKDCCQ504Y2 493 aa3.68□□□□□ -1.82
RNU6-540P-201ENST00000384622 PSDA5PKW4 1024 aaPredicted RBP3.67□□□□□ -1.82
RNU6-540P-201ENST00000384622 KRTAP9-9Q9BYP9 154 aa3.67□□□□□ -1.82
RNU6-540P-201ENST00000384622 KRTAP9-4Q9BYQ2 154 aa3.67□□□□□ -1.82
RNU6-540P-201ENST00000384622 V9GY48 417 aaPredicted RBP3.67□□□□□ -1.82
RNU6-540P-201ENST00000384622 VPS9D1Q9Y2B5 631 aa3.66□□□□□ -1.82
RNU6-540P-201ENST00000384622 ZNF467Q7Z7K2 595 aaPredicted RBP3.65□□□□□ -1.83
RNU6-540P-201ENST00000384622 PSEN1P49768 467 aa3.64□□□□□ -1.83
RNU6-540P-201ENST00000384622 KCNH8Q96L42 1107 aa3.64□□□□□ -1.83
RNU6-540P-201ENST00000384622 ZBTB47Q9UFB7 747 aaPredicted RBP3.64□□□□□ -1.83
RNU6-540P-201ENST00000384622 MICALL2Q8IY33 904 aa3.63□□□□□ -1.83
RNU6-540P-201ENST00000384622 DGAT1O75907 488 aa3.62□□□□□ -1.83
RNU6-540P-201ENST00000384622 PLCD3Q8N3E9 789 aa3.62□□□□□ -1.83
RNU6-540P-201ENST00000384622 MRPL50Q8N5N7 158 aaKnown RBP3.62□□□□□ -1.83
RNU6-540P-201ENST00000384622 ZSCAN1Q8NBB4 408 aa3.61□□□□□ -1.83
RNU6-540P-201ENST00000384622 CABP2Q9NPB3 220 aa3.61□□□□□ -1.83
RNU6-540P-201ENST00000384622 BHMG1C9JSJ3 638 aaPredicted RBP3.6□□□□□ -1.83
RNU6-540P-201ENST00000384622 KCNK17Q96T54 332 aa3.6□□□□□ -1.83
RNU6-540P-201ENST00000384622 PCDHGA4Q9Y5G9 962 aa3.6□□□□□ -1.83
RNU6-540P-201ENST00000384622 KRTAP4-7Q9BYR0 210 aa3.59□□□□□ -1.83
RNU6-540P-201ENST00000384622 LCE2CQ5TA81 110 aa3.58□□□□□ -1.84
RNU6-540P-201ENST00000384622 NYAP1Q6ZVC0 841 aa3.58□□□□□ -1.84
RNU6-540P-201ENST00000384622 LORP23490 312 aaPredicted RBP3.57□□□□□ -1.84
RNU6-540P-201ENST00000384622 PPP4R3BQ5MIZ7 849 aa3.57□□□□□ -1.84
RNU6-540P-201ENST00000384622 C11orf95C9JLR9 678 aaPredicted RBP3.56□□□□□ -1.84
RNU6-540P-201ENST00000384622 KRTAP4-12Q9BQ66 201 aa3.56□□□□□ -1.84
RNU6-540P-201ENST00000384622 ST8SIA5O15466 376 aa3.55□□□□□ -1.84
RNU6-540P-201ENST00000384622 KCNMA1Q12791 1236 aa3.55□□□□□ -1.84
RNU6-540P-201ENST00000384622 AAASQ9NRG9 546 aa3.55□□□□□ -1.84
RNU6-540P-201ENST00000384622 TERTO14746 1132 aaKnown RBP3.54□□□□□ -1.84
RNU6-540P-201ENST00000384622 PPP1R18Q6NYC8 613 aa3.54□□□□□ -1.84
RNU6-540P-201ENST00000384622 TMEM151AQ8N4L1 468 aa3.54□□□□□ -1.84
RNU6-540P-201ENST00000384622 SLC4A5Q9BY07 1137 aa3.54□□□□□ -1.84
RNU6-540P-201ENST00000384622 PDAP1Q13442 181 aaKnown RBP3.53□□□□□ -1.84
RNU6-540P-201ENST00000384622 ANKK1Q8NFD2 765 aa3.53□□□□□ -1.84
RNU6-540P-201ENST00000384622 NBPF3Q9H094 633 aa3.53□□□□□ -1.84
RNU6-540P-201ENST00000384622 FAM187AA6NFU0 413 aa3.52□□□□□ -1.85
RNU6-540P-201ENST00000384622 SLC34A2O95436 690 aa3.52□□□□□ -1.85
RNU6-540P-201ENST00000384622 GDF11O95390 407 aa3.51□□□□□ -1.85
RNU6-540P-201ENST00000384622 BCAMP50895 628 aa3.51□□□□□ -1.85
RNU6-540P-201ENST00000384622 TRIM67Q6ZTA4 783 aa3.51□□□□□ -1.85
RNU6-540P-201ENST00000384622 GMPR2Q9P2T1 348 aaKnown RBP3.51□□□□□ -1.85
RNU6-540P-201ENST00000384622 GSK3AP49840 483 aa3.5□□□□□ -1.85
RNU6-540P-201ENST00000384622 KRTAP17-1Q9BYP8 105 aa3.5□□□□□ -1.85
RNU6-540P-201ENST00000384622 WBP1LQ9NX94 342 aa3.5□□□□□ -1.85
RNU6-540P-201ENST00000384622 EIF4ENIF1Q9NRA8 985 aaKnown RBP3.49□□□□□ -1.85
RNU6-540P-201ENST00000384622 SOWAHBA6NEL2 793 aa3.48□□□□□ -1.85
RNU6-540P-201ENST00000384622 GPAT2Q6NUI2 795 aa3.48□□□□□ -1.85
RNU6-540P-201ENST00000384622 IGHA1P01876 353 aa3.47□□□□□ -1.85
RNU6-540P-201ENST00000384622 RASSF7Q02833 373 aa3.47□□□□□ -1.85
RNU6-540P-201ENST00000384622 PROM2Q8N271 834 aa3.47□□□□□ -1.85
RNU6-540P-201ENST00000384622 DACH1Q9UI36 760 aa3.47□□□□□ -1.85
RNU6-540P-201ENST00000384622 GMPRP36959 345 aa3.46□□□□□ -1.86
RNU6-540P-201ENST00000384622 LCE1DQ5T752 114 aa3.46□□□□□ -1.86
RNU6-540P-201ENST00000384622 Q8N3U1 123 aa3.46□□□□□ -1.86
RNU6-540P-201ENST00000384622 EFCAB3Q8N7B9 438 aa3.46□□□□□ -1.86
RNU6-540P-201ENST00000384622 SLC16A10Q8TF71 515 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms