RNA–Protein interactions for RNA: ENST00000377808.8

SMARCE1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,307 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-203ENST00000377808 ARID4BQ4LE39 1312 aaPredicted RBP18.44■□□□□ 0.54
SMARCE1-203ENST00000377808 MTUS2Q5JR59 1369 aa18.43■□□□□ 0.54
SMARCE1-203ENST00000377808 POGZQ7Z3K3 1410 aa18.42■□□□□ 0.54
SMARCE1-203ENST00000377808 MYT1LQ9UL68 1186 aa18.41■□□□□ 0.54
SMARCE1-203ENST00000377808 ARHGEF40Q8TER5 1519 aa18.41■□□□□ 0.54
SMARCE1-203ENST00000377808 PREX2Q70Z35 1606 aa18.41■□□□□ 0.54
SMARCE1-203ENST00000377808 CDC42BPBQ9Y5S2 1711 aa18.4■□□□□ 0.54
SMARCE1-203ENST00000377808 ZFYVE16Q7Z3T8 1539 aa18.39■□□□□ 0.53
SMARCE1-203ENST00000377808 ZNF777Q9ULD5 760 aaPredicted RBP18.39■□□□□ 0.53
SMARCE1-203ENST00000377808 ZMYM4Q5VZL5 1548 aa18.38■□□□□ 0.53
SMARCE1-203ENST00000377808 CDC42BPAQ5VT25 1732 aa18.37■□□□□ 0.53
SMARCE1-203ENST00000377808 VPS8Q8N3P4 1428 aa18.36■□□□□ 0.53
SMARCE1-203ENST00000377808 YEATS2Q9ULM3 1422 aa18.36■□□□□ 0.53
SMARCE1-203ENST00000377808 CCNB3Q8WWL7 1395 aa18.36■□□□□ 0.53
SMARCE1-203ENST00000377808 EHBP1L1Q8N3D4 1523 aa18.36■□□□□ 0.53
SMARCE1-203ENST00000377808 ZNF518AQ6AHZ1 1483 aa18.36■□□□□ 0.53
SMARCE1-203ENST00000377808 AFAP1Q8N556 730 aa18.35■□□□□ 0.53
SMARCE1-203ENST00000377808 MAGI2Q86UL8 1455 aa18.35■□□□□ 0.53
SMARCE1-203ENST00000377808 ABCC1P33527 1531 aa18.33■□□□□ 0.53
SMARCE1-203ENST00000377808 GPATCH8Q9UKJ3 1502 aaKnown RBP18.33■□□□□ 0.53
SMARCE1-203ENST00000377808 CFDP1Q9UEE9 299 aaPredicted RBP18.32■□□□□ 0.52
SMARCE1-203ENST00000377808 ITSN2Q9NZM3 1697 aa18.3■□□□□ 0.52
SMARCE1-203ENST00000377808 TIAM1Q13009 1591 aa18.3■□□□□ 0.52
SMARCE1-203ENST00000377808 BCORL1Q5H9F3 1711 aa18.29■□□□□ 0.52
SMARCE1-203ENST00000377808 MLECQ14165 292 aa18.29■□□□□ 0.52
SMARCE1-203ENST00000377808 TRAPPC8Q9Y2L5 1435 aa18.29■□□□□ 0.52
SMARCE1-203ENST00000377808 ARHGEF12Q9NZN5 1544 aa18.29■□□□□ 0.52
SMARCE1-203ENST00000377808 KDM5CP41229 1560 aa18.28■□□□□ 0.52
SMARCE1-203ENST00000377808 SAMD9LQ8IVG5 1584 aa18.28■□□□□ 0.52
SMARCE1-203ENST00000377808 HECW2Q9P2P5 1572 aa18.28■□□□□ 0.52
SMARCE1-203ENST00000377808 SYCP2Q9BX26 1530 aa18.28■□□□□ 0.52
SMARCE1-203ENST00000377808 C9orf84Q5VXU9 1444 aa18.28■□□□□ 0.52
SMARCE1-203ENST00000377808 ATP10AO60312 1499 aa18.27■□□□□ 0.52
SMARCE1-203ENST00000377808 ADAMTSL3P82987 1691 aa18.27■□□□□ 0.51
SMARCE1-203ENST00000377808 SUPT6HQ7KZ85 1726 aaKnown RBP18.26■□□□□ 0.51
SMARCE1-203ENST00000377808 MADDQ8WXG6 1647 aa18.26■□□□□ 0.51
SMARCE1-203ENST00000377808 HNRNPMP52272 730 aaKnown RBP eCLIP18.25■□□□□ 0.51
SMARCE1-203ENST00000377808 PLPPR3Q6T4P5 718 aa18.25■□□□□ 0.51
SMARCE1-203ENST00000377808 SIGLEC1Q9BZZ2 1709 aa18.25■□□□□ 0.51
SMARCE1-203ENST00000377808 NCOA2Q15596 1464 aa18.24■□□□□ 0.51
SMARCE1-203ENST00000377808 APLP2Q06481 763 aa18.23■□□□□ 0.51
SMARCE1-203ENST00000377808 PLEKHH2Q8IVE3 1493 aa18.23■□□□□ 0.51
SMARCE1-203ENST00000377808 PTPRMP28827 1452 aa18.22■□□□□ 0.51
SMARCE1-203ENST00000377808 LRRC9Q6ZRR7 1453 aa18.22■□□□□ 0.51
SMARCE1-203ENST00000377808 MLH3Q9UHC1 1453 aa18.22■□□□□ 0.51
SMARCE1-203ENST00000377808 DIP2CQ9Y2E4 1556 aa18.22■□□□□ 0.51
SMARCE1-203ENST00000377808 RIMS1Q86UR5 1692 aaKnown RBP18.22■□□□□ 0.51
SMARCE1-203ENST00000377808 SPAG9O60271 1321 aaKnown RBP18.21■□□□□ 0.51
SMARCE1-203ENST00000377808 ABCA6Q8N139 1617 aa18.21■□□□□ 0.51
SMARCE1-203ENST00000377808 ZNF644Q9H582 1327 aaPredicted RBP18.2■□□□□ 0.5
SMARCE1-203ENST00000377808 KIAA1107Q9UPP5 1409 aa18.19■□□□□ 0.5
SMARCE1-203ENST00000377808 KANK4Q5T7N3 995 aaPredicted RBP18.19■□□□□ 0.5
SMARCE1-203ENST00000377808 KIDINS220Q9ULH0 1771 aa18.17■□□□□ 0.5
SMARCE1-203ENST00000377808 MAP3K1Q13233 1512 aa18.17■□□□□ 0.5
SMARCE1-203ENST00000377808 FER1L4A9Z1Z3 1794 aa18.16■□□□□ 0.5
SMARCE1-203ENST00000377808 ATP7AQ04656 1500 aa18.14■□□□□ 0.49
SMARCE1-203ENST00000377808 CAMSAP2Q08AD1 1489 aa18.14■□□□□ 0.49
SMARCE1-203ENST00000377808 REREQ9P2R6 1566 aa18.13■□□□□ 0.49
SMARCE1-203ENST00000377808 INO80Q9ULG1 1556 aaPredicted RBP18.11■□□□□ 0.49
SMARCE1-203ENST00000377808 ESF1Q9H501 851 aaKnown RBP18.11■□□□□ 0.49
SMARCE1-203ENST00000377808 MBD5Q9P267 1494 aa18.1■□□□□ 0.49
SMARCE1-203ENST00000377808 CCDC141Q6ZP82 1450 aa18.09■□□□□ 0.49
SMARCE1-203ENST00000377808 AGLP35573 1532 aa18.09■□□□□ 0.49
SMARCE1-203ENST00000377808 A2MP01023 1474 aa18.07■□□□□ 0.48
SMARCE1-203ENST00000377808 MYOM3Q5VTT5 1437 aa18.06■□□□□ 0.48
SMARCE1-203ENST00000377808 CEBPAP49715 358 aaPredicted RBP18.05■□□□□ 0.48
SMARCE1-203ENST00000377808 TSPY4P0CV99 314 aa18.04■□□□□ 0.48
SMARCE1-203ENST00000377808 TSPY10P0CW01 314 aa18.04■□□□□ 0.48
SMARCE1-203ENST00000377808 RSPH4AQ5TD94 716 aa18.04■□□□□ 0.48
SMARCE1-203ENST00000377808 ADGBQ8N7X0 1667 aa18.03■□□□□ 0.48
SMARCE1-203ENST00000377808 RTEL1-TNFRSF6BF6WH68 1400 aa18.03■□□□□ 0.48
SMARCE1-203ENST00000377808 MIA2Q96PC5 1412 aa18.02■□□□□ 0.48
SMARCE1-203ENST00000377808 PLXNC1O60486 1568 aa18.02■□□□□ 0.47
SMARCE1-203ENST00000377808 ARHGEF5Q12774 1597 aa18.02■□□□□ 0.47
SMARCE1-203ENST00000377808 GGT6Q6P531 493 aa18.01■□□□□ 0.47
SMARCE1-203ENST00000377808 LMTK3Q96Q04 1460 aa18■□□□□ 0.47
SMARCE1-203ENST00000377808 CNTLNQ9NXG0 1405 aa17.98■□□□□ 0.47
SMARCE1-203ENST00000377808 HSPA2P54652 639 aa17.98■□□□□ 0.47
SMARCE1-203ENST00000377808 DHX29Q7Z478 1369 aaKnown RBP17.97■□□□□ 0.47
SMARCE1-203ENST00000377808 PTPN23Q9H3S7 1636 aa17.97■□□□□ 0.47
SMARCE1-203ENST00000377808 C3P01024 1663 aa17.97■□□□□ 0.47
SMARCE1-203ENST00000377808 KIF3BO15066 747 aa17.95■□□□□ 0.46
SMARCE1-203ENST00000377808 CLTCQ00610 1675 aaKnown RBP17.95■□□□□ 0.46
SMARCE1-203ENST00000377808 FGD6Q6ZV73 1430 aa17.94■□□□□ 0.46
SMARCE1-203ENST00000377808 PREX1Q8TCU6 1659 aa17.93■□□□□ 0.46
SMARCE1-203ENST00000377808 UHRF1BP1Q6BDS2 1440 aa17.93■□□□□ 0.46
SMARCE1-203ENST00000377808 ZMYM3Q14202 1370 aa17.92■□□□□ 0.46
SMARCE1-203ENST00000377808 MAST1Q9Y2H9 1570 aa17.92■□□□□ 0.46
SMARCE1-203ENST00000377808 MROH2AA6NES4 1674 aa17.9■□□□□ 0.46
SMARCE1-203ENST00000377808 FAM50AQ14320 339 aaKnown RBP17.9■□□□□ 0.46
SMARCE1-203ENST00000377808 PPARGC1BQ86YN6 1023 aaKnown RBP17.9■□□□□ 0.46
SMARCE1-203ENST00000377808 TCOF1Q13428 1488 aaKnown RBP17.88■□□□□ 0.45
SMARCE1-203ENST00000377808 ABCC5O15440 1437 aa17.88■□□□□ 0.45
SMARCE1-203ENST00000377808 DAPK1P53355 1430 aa17.88■□□□□ 0.45
SMARCE1-203ENST00000377808 CROCC2H7BZ55 1655 aa17.88■□□□□ 0.45
SMARCE1-203ENST00000377808 PPP6R1Q9UPN7 881 aa17.88■□□□□ 0.45
SMARCE1-203ENST00000377808 CHIC2Q9UKJ5 165 aa17.87■□□□□ 0.45
SMARCE1-203ENST00000377808 SHANK2Q9UPX8 1470 aa17.87■□□□□ 0.45
SMARCE1-203ENST00000377808 DNMT1P26358 1616 aaKnown RBP17.86■□□□□ 0.45
SMARCE1-203ENST00000377808 WASHC2CQ9Y4E1 1318 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms