RNA–Protein interactions for RNA: ENST00000376610.6

HDAC6-202, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 736 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-202ENST00000376610 CLIP1P30622 1438 aa30.25■■■□□ 2.43
HDAC6-202ENST00000376610 EFCAB2Q5VUJ9 269 aa30.25■■■□□ 2.43
HDAC6-202ENST00000376610 ILDR1Q86SU0 546 aaPredicted RBP30.24■■■□□ 2.43
HDAC6-202ENST00000376610 TROQ12816 1431 aaPredicted RBP30.22■■■□□ 2.43
HDAC6-202ENST00000376610 RIMS1Q86UR5 1692 aaKnown RBP30.2■■■□□ 2.43
HDAC6-202ENST00000376610 YEATS2Q9ULM3 1422 aa30.2■■■□□ 2.42
HDAC6-202ENST00000376610 ARHGAP5Q13017 1502 aa30.16■■■□□ 2.42
HDAC6-202ENST00000376610 LRRIQ1Q96JM4 1722 aa30.16■■■□□ 2.42
HDAC6-202ENST00000376610 CCDC18Q5T9S5 1454 aa30.14■■■□□ 2.42
HDAC6-202ENST00000376610 CASKIN1Q8WXD9 1431 aa30.13■■■□□ 2.41
HDAC6-202ENST00000376610 PCF11O94913 1555 aaKnown RBP30.11■■■□□ 2.41
HDAC6-202ENST00000376610 ZNF518AQ6AHZ1 1483 aa30.1■■■□□ 2.41
HDAC6-202ENST00000376610 ATP10AO60312 1499 aa30.09■■■□□ 2.41
HDAC6-202ENST00000376610 MLECQ14165 292 aa30.09■■■□□ 2.41
HDAC6-202ENST00000376610 SIGLEC1Q9BZZ2 1709 aa30.08■■■□□ 2.41
HDAC6-202ENST00000376610 C9orf84Q5VXU9 1444 aa30.07■■■□□ 2.4
HDAC6-202ENST00000376610 PLPPR3Q6T4P5 718 aa30.07■■■□□ 2.4
HDAC6-202ENST00000376610 FER1L4A9Z1Z3 1794 aa30.05■■■□□ 2.4
HDAC6-202ENST00000376610 MYT1LQ9UL68 1186 aa30.05■■■□□ 2.4
HDAC6-202ENST00000376610 LMTK3Q96Q04 1460 aa30.04■■■□□ 2.4
HDAC6-202ENST00000376610 CDC42BPBQ9Y5S2 1711 aa30.02■■■□□ 2.4
HDAC6-202ENST00000376610 FYCO1Q9BQS8 1478 aa30.02■■■□□ 2.4
HDAC6-202ENST00000376610 KDM5CP41229 1560 aa30.01■■■□□ 2.39
HDAC6-202ENST00000376610 PREX2Q70Z35 1606 aa30■■■□□ 2.39
HDAC6-202ENST00000376610 AFAP1Q8N556 730 aa30■■■□□ 2.39
HDAC6-202ENST00000376610 ARHGEF12Q9NZN5 1544 aa29.96■■■□□ 2.39
HDAC6-202ENST00000376610 ABCC1P33527 1531 aa29.92■■■□□ 2.38
HDAC6-202ENST00000376610 CDC42BPAQ5VT25 1732 aa29.91■■■□□ 2.38
HDAC6-202ENST00000376610 DIP2CQ9Y2E4 1556 aa29.9■■■□□ 2.38
HDAC6-202ENST00000376610 MLH3Q9UHC1 1453 aa29.9■■■□□ 2.38
HDAC6-202ENST00000376610 ITSN2Q9NZM3 1697 aa29.9■■■□□ 2.38
HDAC6-202ENST00000376610 HSPA2P54652 639 aa29.88■■■□□ 2.37
HDAC6-202ENST00000376610 REREQ9P2R6 1566 aa29.87■■■□□ 2.37
HDAC6-202ENST00000376610 TRAPPC8Q9Y2L5 1435 aa29.86■■■□□ 2.37
HDAC6-202ENST00000376610 ABCA6Q8N139 1617 aa29.85■■■□□ 2.37
HDAC6-202ENST00000376610 FBXO41Q8TF61 875 aa29.84■■■□□ 2.37
HDAC6-202ENST00000376610 ZNF777Q9ULD5 760 aaPredicted RBP29.83■■■□□ 2.37
HDAC6-202ENST00000376610 PREX1Q8TCU6 1659 aa29.81■■■□□ 2.36
HDAC6-202ENST00000376610 ESF1Q9H501 851 aaKnown RBP29.8■■■□□ 2.36
HDAC6-202ENST00000376610 CEBPAP49715 358 aaPredicted RBP29.78■■■□□ 2.36
HDAC6-202ENST00000376610 AGLP35573 1532 aa29.77■■■□□ 2.36
HDAC6-202ENST00000376610 GPATCH8Q9UKJ3 1502 aaKnown RBP29.77■■■□□ 2.36
HDAC6-202ENST00000376610 MTUS2Q5JR59 1369 aa29.77■■■□□ 2.36
HDAC6-202ENST00000376610 KIDINS220Q9ULH0 1771 aa29.76■■■□□ 2.35
HDAC6-202ENST00000376610 SAMD9LQ8IVG5 1584 aa29.75■■■□□ 2.35
HDAC6-202ENST00000376610 CCNB3Q8WWL7 1395 aa29.75■■■□□ 2.35
HDAC6-202ENST00000376610 SYCP2Q9BX26 1530 aa29.74■■■□□ 2.35
HDAC6-202ENST00000376610 SETD1BQ9UPS6 1966 aaKnown RBP29.73■■■□□ 2.35
HDAC6-202ENST00000376610 CFDP1Q9UEE9 299 aaPredicted RBP29.73■■■□□ 2.35
HDAC6-202ENST00000376610 PLEKHH2Q8IVE3 1493 aa29.72■■■□□ 2.35
HDAC6-202ENST00000376610 UHRF1BP1Q6BDS2 1440 aa29.71■■■□□ 2.35
HDAC6-202ENST00000376610 SPAG9O60271 1321 aaKnown RBP29.71■■■□□ 2.35
HDAC6-202ENST00000376610 HNRNPMP52272 730 aaKnown RBP eCLIP29.68■■■□□ 2.34
HDAC6-202ENST00000376610 KIAA1107Q9UPP5 1409 aa29.67■■■□□ 2.34
HDAC6-202ENST00000376610 C3P01024 1663 aa29.66■■■□□ 2.34
HDAC6-202ENST00000376610 CNTLNQ9NXG0 1405 aa29.66■■■□□ 2.34
HDAC6-202ENST00000376610 EHBP1L1Q8N3D4 1523 aa29.64■■■□□ 2.34
HDAC6-202ENST00000376610 CEP162Q5TB80 1403 aa29.63■■■□□ 2.33
HDAC6-202ENST00000376610 ATP7AQ04656 1500 aa29.63■■■□□ 2.33
HDAC6-202ENST00000376610 DMRT2Q9Y5R5 561 aa29.62■■■□□ 2.33
HDAC6-202ENST00000376610 SUPT6HQ7KZ85 1726 aaKnown RBP29.59■■■□□ 2.33
HDAC6-202ENST00000376610 INO80Q9ULG1 1556 aaPredicted RBP29.58■■■□□ 2.33
HDAC6-202ENST00000376610 TIAM1Q13009 1591 aa29.57■■■□□ 2.32
HDAC6-202ENST00000376610 CERKQ8TCT0 537 aa29.55■■■□□ 2.32
HDAC6-202ENST00000376610 MROH2AA6NES4 1674 aa29.54■■■□□ 2.32
HDAC6-202ENST00000376610 A2MP01023 1474 aa29.54■■■□□ 2.32
HDAC6-202ENST00000376610 STRCQ7RTU9 1775 aa29.53■■■□□ 2.32
HDAC6-202ENST00000376610 PLXNC1O60486 1568 aa29.51■■■□□ 2.31
HDAC6-202ENST00000376610 ADGBQ8N7X0 1667 aa29.5■■■□□ 2.31
HDAC6-202ENST00000376610 ZNF644Q9H582 1327 aaPredicted RBP29.48■■■□□ 2.31
HDAC6-202ENST00000376610 NPATQ14207 1427 aa29.48■■■□□ 2.31
HDAC6-202ENST00000376610 ZMYM3Q14202 1370 aa29.47■■■□□ 2.31
HDAC6-202ENST00000376610 CLTCQ00610 1675 aaKnown RBP29.45■■■□□ 2.31
HDAC6-202ENST00000376610 GGT6Q6P531 493 aa29.45■■■□□ 2.31
HDAC6-202ENST00000376610 MBD5Q9P267 1494 aa29.44■■■□□ 2.3
HDAC6-202ENST00000376610 RTEL1-TNFRSF6BF6WH68 1400 aa29.43■■■□□ 2.3
HDAC6-202ENST00000376610 NCOA2Q15596 1464 aa29.42■■■□□ 2.3
HDAC6-202ENST00000376610 PTPRTO14522 1441 aa29.42■■■□□ 2.3
HDAC6-202ENST00000376610 PPP6R1Q9UPN7 881 aa29.41■■■□□ 2.3
HDAC6-202ENST00000376610 CCDC141Q6ZP82 1450 aa29.37■■■□□ 2.29
HDAC6-202ENST00000376610 RSPH4AQ5TD94 716 aa29.37■■■□□ 2.29
HDAC6-202ENST00000376610 NCOA1Q15788 1441 aa29.37■■■□□ 2.29
HDAC6-202ENST00000376610 CAMSAP2Q08AD1 1489 aa29.36■■■□□ 2.29
HDAC6-202ENST00000376610 DHX29Q7Z478 1369 aaKnown RBP29.34■■■□□ 2.29
HDAC6-202ENST00000376610 VPS8Q8N3P4 1428 aa29.34■■■□□ 2.29
HDAC6-202ENST00000376610 CAMSAP1Q5T5Y3 1602 aa29.34■■■□□ 2.29
HDAC6-202ENST00000376610 MYO3AQ8NEV4 1616 aa29.31■■■□□ 2.28
HDAC6-202ENST00000376610 PTPRKQ15262 1439 aa29.31■■■□□ 2.28
HDAC6-202ENST00000376610 ZNF142P52746 1687 aaPredicted RBP29.29■■■□□ 2.28
HDAC6-202ENST00000376610 LOC105371045A0A1W2PR82 267 aa29.29■■■□□ 2.28
HDAC6-202ENST00000376610 LRRC9Q6ZRR7 1453 aa29.28■■■□□ 2.28
HDAC6-202ENST00000376610 TSPY4P0CV99 314 aa29.27■■■□□ 2.28
HDAC6-202ENST00000376610 TSPY10P0CW01 314 aa29.27■■■□□ 2.28
HDAC6-202ENST00000376610 CEP170BQ9Y4F5 1589 aaPredicted RBP29.26■■■□□ 2.28
HDAC6-202ENST00000376610 KIF3BO15066 747 aa29.26■■■□□ 2.27
HDAC6-202ENST00000376610 ARHGEF5Q12774 1597 aa29.26■■■□□ 2.27
HDAC6-202ENST00000376610 PLA2R1Q13018 1463 aa29.23■■■□□ 2.27
HDAC6-202ENST00000376610 FAM135AQ9P2D6 1515 aa29.22■■■□□ 2.27
HDAC6-202ENST00000376610 PKD2Q13563 968 aa29.21■■■□□ 2.27
HDAC6-202ENST00000376610 NCKAP5LQ9HCH0 1330 aa29.2■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms