RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 CCAR1Q8IX12 1150 aaKnown RBP5.9□□□□□ -1.46
SCN1A-202ENST00000375405 IBSPP21815 317 aaPredicted RBP5.9□□□□□ -1.47
SCN1A-202ENST00000375405 ODF2Q5BJF6 829 aa5.9□□□□□ -1.47
SCN1A-202ENST00000375405 SOX12O15370 315 aa5.9□□□□□ -1.47
SCN1A-202ENST00000375405 STAC3Q96MF2 364 aa5.89□□□□□ -1.47
SCN1A-202ENST00000375405 STK11IPQ8N1F8 1099 aa5.89□□□□□ -1.47
SCN1A-202ENST00000375405 FTSJ3Q8IY81 847 aaKnown RBP5.89□□□□□ -1.47
SCN1A-202ENST00000375405 R3HCC1Q9Y3T6 440 aaKnown RBP5.89□□□□□ -1.47
SCN1A-202ENST00000375405 ZFYVE27Q5T4F4 411 aa5.88□□□□□ -1.47
SCN1A-202ENST00000375405 HSP90AB1P08238 724 aaKnown RBP5.88□□□□□ -1.47
SCN1A-202ENST00000375405 HTATSF1O43719 755 aaKnown RBP5.88□□□□□ -1.47
SCN1A-202ENST00000375405 HMGN5P82970 282 aaKnown RBP5.88□□□□□ -1.47
SCN1A-202ENST00000375405 CCAR2Q8N163 923 aaKnown RBP5.88□□□□□ -1.47
SCN1A-202ENST00000375405 FBXW7Q969H0 707 aa5.88□□□□□ -1.47
SCN1A-202ENST00000375405 PPP1R1BQ9UD71 204 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-202ENST00000375405 CHMP3Q9Y3E7 222 aa5.88□□□□□ -1.47
SCN1A-202ENST00000375405 HNRNPUQ00839 825 aaKnown RBP eCLIP5.88□□□□□ -1.47
SCN1A-202ENST00000375405 PLCD4Q9BRC7 762 aa5.88□□□□□ -1.47
SCN1A-202ENST00000375405 TMEM132AQ24JP5 1023 aa5.87□□□□□ -1.47
SCN1A-202ENST00000375405 MSNP26038 577 aaKnown RBP5.87□□□□□ -1.47
SCN1A-202ENST00000375405 GTF2E1P29083 439 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-202ENST00000375405 WWC2Q6AWC2 1192 aa5.87□□□□□ -1.47
SCN1A-202ENST00000375405 HOMER1Q86YM7 354 aa5.86□□□□□ -1.47
SCN1A-202ENST00000375405 CCDC43Q96MW1 224 aaKnown RBP5.86□□□□□ -1.47
SCN1A-202ENST00000375405 TPM3P06753 285 aa5.86□□□□□ -1.47
SCN1A-202ENST00000375405 USP35Q9P2H5 1018 aa5.86□□□□□ -1.47
SCN1A-202ENST00000375405 CT47A1Q5JQC4 288 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-202ENST00000375405 GORABQ5T7V8 394 aa5.86□□□□□ -1.47
SCN1A-202ENST00000375405 TMEM87AQ8NBN3 555 aa5.85□□□□□ -1.47
SCN1A-202ENST00000375405 TPD52L1Q16890 204 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-202ENST00000375405 KDM2AQ9Y2K7 1162 aa5.85□□□□□ -1.47
SCN1A-202ENST00000375405 MIER1Q8N108 512 aa5.85□□□□□ -1.47
SCN1A-202ENST00000375405 PDCL3Q9H2J4 239 aa5.85□□□□□ -1.47
SCN1A-202ENST00000375405 TOMM22Q9NS69 142 aa5.85□□□□□ -1.47
SCN1A-202ENST00000375405 HIRIP3Q9BW71 556 aaPredicted RBP5.84□□□□□ -1.47
SCN1A-202ENST00000375405 DDX10Q13206 875 aaKnown RBP5.84□□□□□ -1.47
SCN1A-202ENST00000375405 P3H3Q8IVL6 736 aa5.84□□□□□ -1.47
SCN1A-202ENST00000375405 MAP7D2Q96T17 732 aa5.84□□□□□ -1.47
SCN1A-202ENST00000375405 RSPH6AQ9H0K4 717 aa5.83□□□□□ -1.48
SCN1A-202ENST00000375405 TSR1Q2NL82 804 aaKnown RBP5.83□□□□□ -1.48
SCN1A-202ENST00000375405 CSB-PGBD3P0DP91 1061 aa5.83□□□□□ -1.48
SCN1A-202ENST00000375405 HMMRO75330 724 aa5.82□□□□□ -1.48
SCN1A-202ENST00000375405 PCMTD1Q96MG8 357 aaPredicted RBP5.82□□□□□ -1.48
SCN1A-202ENST00000375405 ANKRD62A6NC57 917 aa5.82□□□□□ -1.48
SCN1A-202ENST00000375405 CCDC34Q96HJ3 373 aa5.82□□□□□ -1.48
SCN1A-202ENST00000375405 KAT6BQ8WYB5 2073 aa5.82□□□□□ -1.48
SCN1A-202ENST00000375405 HSP90AB2PQ58FF8 381 aa5.81□□□□□ -1.48
SCN1A-202ENST00000375405 PAXIP1Q6ZW49 1069 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-202ENST00000375405 PSMD1Q99460 953 aa5.81□□□□□ -1.48
SCN1A-202ENST00000375405 GRIPAP1Q4V328 841 aa5.81□□□□□ -1.48
SCN1A-202ENST00000375405 DHX37Q8IY37 1157 aaKnown RBP5.81□□□□□ -1.48
SCN1A-202ENST00000375405 APBB1O00213 710 aa5.8□□□□□ -1.48
SCN1A-202ENST00000375405 MYCNP04198 464 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-202ENST00000375405 SLC4A3P48751 1232 aa5.8□□□□□ -1.48
SCN1A-202ENST00000375405 PHF14O94880 888 aa5.8□□□□□ -1.48
SCN1A-202ENST00000375405 DDRGK1Q96HY6 314 aa5.8□□□□□ -1.48
SCN1A-202ENST00000375405 UQCRHLA0A096LP55 91 aa5.8□□□□□ -1.48
SCN1A-202ENST00000375405 SKIDA1Q1XH10 827 aa5.8□□□□□ -1.48
SCN1A-202ENST00000375405 PAK3O75914 559 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-202ENST00000375405 TPM2P07951 284 aa5.8□□□□□ -1.48
SCN1A-202ENST00000375405 MCCP23508 829 aa5.8□□□□□ -1.48
SCN1A-202ENST00000375405 GOLGA6L3A6NEY3 463 aa5.8□□□□□ -1.48
SCN1A-202ENST00000375405 NEFHP12036 1026 aa5.8□□□□□ -1.48
SCN1A-202ENST00000375405 KIAA1211Q6ZU35 1233 aa5.8□□□□□ -1.48
SCN1A-202ENST00000375405 DHX16O60231 1041 aaKnown RBP5.79□□□□□ -1.48
SCN1A-202ENST00000375405 FOXD4L1Q9NU39 408 aa5.79□□□□□ -1.48
SCN1A-202ENST00000375405 ZRSR2Q15696 482 aaKnown RBP5.79□□□□□ -1.48
SCN1A-202ENST00000375405 CCDC70Q6NSX1 233 aa5.79□□□□□ -1.48
SCN1A-202ENST00000375405 PABPN1Q86U42 306 aaKnown RBP eCLIP5.79□□□□□ -1.48
SCN1A-202ENST00000375405 PUS7Q96PZ0 661 aaKnown RBP5.79□□□□□ -1.48
SCN1A-202ENST00000375405 ZMYND15Q9H091 742 aa5.79□□□□□ -1.48
SCN1A-202ENST00000375405 MRS2Q9HD23 443 aa5.79□□□□□ -1.48
SCN1A-202ENST00000375405 PDIA4P13667 645 aaKnown RBP5.79□□□□□ -1.48
SCN1A-202ENST00000375405 CA8P35219 290 aa5.79□□□□□ -1.48
SCN1A-202ENST00000375405 SOGA3Q5TF21 947 aa5.78□□□□□ -1.48
SCN1A-202ENST00000375405 DDX23Q9BUQ8 820 aaKnown RBP5.78□□□□□ -1.48
SCN1A-202ENST00000375405 PODXL2Q9NZ53 605 aa5.78□□□□□ -1.48
SCN1A-202ENST00000375405 NAP1L1P55209 391 aaKnown RBP5.78□□□□□ -1.48
SCN1A-202ENST00000375405 NEBLO76041 1014 aa5.77□□□□□ -1.49
SCN1A-202ENST00000375405 TTC16Q8NEE8 873 aa5.77□□□□□ -1.49
SCN1A-202ENST00000375405 MAPK8IP3Q9UPT6 1336 aa5.77□□□□□ -1.49
SCN1A-202ENST00000375405 NOL10Q9BSC4 688 aaKnown RBP5.77□□□□□ -1.49
SCN1A-202ENST00000375405 TEX35Q5T0J7 233 aa5.76□□□□□ -1.49
SCN1A-202ENST00000375405 NF2P35240 595 aa5.76□□□□□ -1.49
SCN1A-202ENST00000375405 WDR78Q5VTH9 848 aa5.76□□□□□ -1.49
SCN1A-202ENST00000375405 CCDC191Q8NCU4 936 aa5.76□□□□□ -1.49
SCN1A-202ENST00000375405 UQCRHP07919 91 aa5.76□□□□□ -1.49
SCN1A-202ENST00000375405 CALD1Q05682 793 aaKnown RBP5.76□□□□□ -1.49
SCN1A-202ENST00000375405 FRAT1Q92837 279 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-202ENST00000375405 CHMP4BP1P59074 171 aa5.75□□□□□ -1.49
SCN1A-202ENST00000375405 CFAP53Q96M91 514 aa5.75□□□□□ -1.49
SCN1A-202ENST00000375405 SRPK2P78362 688 aaKnown RBP5.75□□□□□ -1.49
SCN1A-202ENST00000375405 AMOTL1Q8IY63 956 aa5.75□□□□□ -1.49
SCN1A-202ENST00000375405 AKAP17AQ02040 695 aaKnown RBP5.75□□□□□ -1.49
SCN1A-202ENST00000375405 NEXNQ0ZGT2 675 aa5.75□□□□□ -1.49
SCN1A-202ENST00000375405 RDXP35241 583 aaKnown RBP5.75□□□□□ -1.49
SCN1A-202ENST00000375405 EPS15P42566 896 aa5.75□□□□□ -1.49
SCN1A-202ENST00000375405 POGKQ9P215 609 aa5.75□□□□□ -1.49
SCN1A-202ENST00000375405 ZWINTO95229 277 aa5.74□□□□□ -1.49
SCN1A-202ENST00000375405 NOP2P46087 812 aaKnown RBP5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms