RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 EPRSP07814 1512 aaKnown RBP29.08■■■□□ 2.25
UPF3A-202ENST00000375299 PRKRIP1Q9H875 184 aaPredicted RBP29.08■■■□□ 2.25
UPF3A-202ENST00000375299 ZBED9Q6R2W3 1325 aa29.05■■■□□ 2.24
UPF3A-202ENST00000375299 MPHOSPH9Q99550 1183 aa29.04■■■□□ 2.24
UPF3A-202ENST00000375299 L3MBTL2Q969R5 705 aa29.04■■■□□ 2.24
UPF3A-202ENST00000375299 POLR1AO95602 1720 aaPredicted RBP29.04■■■□□ 2.24
UPF3A-202ENST00000375299 C11orf95C9JLR9 678 aaPredicted RBP29.02■■■□□ 2.24
UPF3A-202ENST00000375299 WDR62O43379 1518 aa29.02■■■□□ 2.24
UPF3A-202ENST00000375299 MIA2Q96PC5 1412 aa29.01■■■□□ 2.23
UPF3A-202ENST00000375299 FAM9BQ8IZU0 186 aa29.01■■■□□ 2.23
UPF3A-202ENST00000375299 CDK13Q14004 1512 aaKnown RBP29■■■□□ 2.23
UPF3A-202ENST00000375299 MRS2Q9HD23 443 aa29■■■□□ 2.23
UPF3A-202ENST00000375299 RPRD2Q5VT52 1461 aaKnown RBP28.95■■■□□ 2.23
UPF3A-202ENST00000375299 IFT140Q96RY7 1462 aa28.95■■■□□ 2.22
UPF3A-202ENST00000375299 ZNF608Q9ULD9 1512 aaPredicted RBP28.95■■■□□ 2.22
UPF3A-202ENST00000375299 TEX14Q8IWB6 1497 aa28.94■■■□□ 2.22
UPF3A-202ENST00000375299 B4GALNT3Q6L9W6 998 aa28.93■■■□□ 2.22
UPF3A-202ENST00000375299 ANKRD30BQ9BXX2 1392 aa28.91■■■□□ 2.22
UPF3A-202ENST00000375299 FOXD1Q16676 465 aa28.91■■■□□ 2.22
UPF3A-202ENST00000375299 NBPF8Q3BBV2 869 aa28.9■■■□□ 2.22
UPF3A-202ENST00000375299 SPATA31E1Q6ZUB1 1445 aa28.9■■■□□ 2.22
UPF3A-202ENST00000375299 KIF7Q2M1P5 1343 aa28.88■■■□□ 2.21
UPF3A-202ENST00000375299 MYT1LQ9UL68 1186 aa28.88■■■□□ 2.21
UPF3A-202ENST00000375299 ARID3CA6NKF2 412 aa28.88■■■□□ 2.21
UPF3A-202ENST00000375299 KIAA0586Q9BVV6 1533 aa28.87■■■□□ 2.21
UPF3A-202ENST00000375299 ROCK1Q13464 1354 aa28.86■■■□□ 2.21
UPF3A-202ENST00000375299 KIAA0556O60303 1618 aa28.85■■■□□ 2.21
UPF3A-202ENST00000375299 DISP1Q96F81 1524 aa28.85■■■□□ 2.21
UPF3A-202ENST00000375299 DAPK1P53355 1430 aa28.83■■■□□ 2.21
UPF3A-202ENST00000375299 DNMT1P26358 1616 aaKnown RBP28.82■■■□□ 2.2
UPF3A-202ENST00000375299 SMG6Q86US8 1419 aaKnown RBP28.81■■■□□ 2.2
UPF3A-202ENST00000375299 NUP153P49790 1475 aaKnown RBP28.78■■■□□ 2.2
UPF3A-202ENST00000375299 GRIN2AQ12879 1464 aa28.78■■■□□ 2.2
UPF3A-202ENST00000375299 EIF4G3O43432 1585 aaKnown RBP28.75■■■□□ 2.19
UPF3A-202ENST00000375299 ABCC5O15440 1437 aa28.75■■■□□ 2.19
UPF3A-202ENST00000375299 RAPGEF6Q8TEU7 1601 aa28.75■■■□□ 2.19
UPF3A-202ENST00000375299 DHX29Q7Z478 1369 aaKnown RBP28.72■■■□□ 2.19
UPF3A-202ENST00000375299 SLC4A1APQ9BWU0 796 aaKnown RBP28.71■■■□□ 2.19
UPF3A-202ENST00000375299 NOP58Q9Y2X3 529 aaKnown RBP28.7■■■□□ 2.18
UPF3A-202ENST00000375299 NUDCQ9Y266 331 aa28.69■■■□□ 2.18
UPF3A-202ENST00000375299 RNF123Q5XPI4 1314 aa28.69■■■□□ 2.18
UPF3A-202ENST00000375299 MBD5Q9P267 1494 aa28.68■■■□□ 2.18
UPF3A-202ENST00000375299 BCORL1Q5H9F3 1711 aa28.67■■■□□ 2.18
UPF3A-202ENST00000375299 ZNF644Q9H582 1327 aaPredicted RBP28.65■■■□□ 2.18
UPF3A-202ENST00000375299 PZPP20742 1482 aa28.65■■■□□ 2.18
UPF3A-202ENST00000375299 DEKP35659 375 aaKnown RBP28.64■■■□□ 2.17
UPF3A-202ENST00000375299 KIF14Q15058 1648 aa28.63■■■□□ 2.17
UPF3A-202ENST00000375299 MAGI1Q96QZ7 1491 aaPredicted RBP28.62■■■□□ 2.17
UPF3A-202ENST00000375299 USP47Q96K76 1375 aa28.6■■■□□ 2.17
UPF3A-202ENST00000375299 ADGBQ8N7X0 1667 aa28.59■■■□□ 2.17
UPF3A-202ENST00000375299 KDM5CP41229 1560 aa28.59■■■□□ 2.17
UPF3A-202ENST00000375299 CEP170Q5SW79 1584 aa28.59■■■□□ 2.17
UPF3A-202ENST00000375299 CCDC136Q96JN2 1154 aa28.59■■■□□ 2.17
UPF3A-202ENST00000375299 TROQ12816 1431 aaPredicted RBP28.58■■■□□ 2.17
UPF3A-202ENST00000375299 PRG4Q92954 1404 aaPredicted RBP28.58■■■□□ 2.17
UPF3A-202ENST00000375299 ARID4BQ4LE39 1312 aaPredicted RBP28.57■■■□□ 2.16
UPF3A-202ENST00000375299 PAK3O75914 559 aaPredicted RBP28.56■■■□□ 2.16
UPF3A-202ENST00000375299 SYNJ2O15056 1496 aa28.55■■■□□ 2.16
UPF3A-202ENST00000375299 ERCC6Q03468 1493 aa28.55■■■□□ 2.16
UPF3A-202ENST00000375299 CHMP7Q8WUX9 453 aaPredicted RBP28.54■■■□□ 2.16
UPF3A-202ENST00000375299 PLB1Q6P1J6 1458 aa28.54■■■□□ 2.16
UPF3A-202ENST00000375299 KIAA1107Q9UPP5 1409 aa28.54■■■□□ 2.16
UPF3A-202ENST00000375299 CAMSAP2Q08AD1 1489 aa28.52■■■□□ 2.16
UPF3A-202ENST00000375299 ITSN2Q9NZM3 1697 aa28.51■■■□□ 2.15
UPF3A-202ENST00000375299 POLR3GLQ9BT43 218 aa28.51■■■□□ 2.15
UPF3A-202ENST00000375299 ANP32AP39687 249 aaKnown RBP28.5■■■□□ 2.15
UPF3A-202ENST00000375299 CNGB1Q14028 1251 aaPredicted RBP28.5■■■□□ 2.15
UPF3A-202ENST00000375299 ROCK2O75116 1388 aaKnown RBP28.49■■■□□ 2.15
UPF3A-202ENST00000375299 ADCY10Q96PN6 1610 aa28.49■■■□□ 2.15
UPF3A-202ENST00000375299 PNISRQ8TF01 805 aaKnown RBP28.49■■■□□ 2.15
UPF3A-202ENST00000375299 GPATCH8Q9UKJ3 1502 aaKnown RBP28.49■■■□□ 2.15
UPF3A-202ENST00000375299 CFDP1Q9UEE9 299 aaPredicted RBP28.48■■■□□ 2.15
UPF3A-202ENST00000375299 IPO9Q96P70 1041 aaKnown RBP28.48■■■□□ 2.15
UPF3A-202ENST00000375299 CROCC2H7BZ55 1655 aa28.47■■■□□ 2.15
UPF3A-202ENST00000375299 NBR1Q14596 966 aa28.47■■■□□ 2.15
UPF3A-202ENST00000375299 ADGRL2O95490 1459 aa28.46■■■□□ 2.15
UPF3A-202ENST00000375299 ZNF326Q5BKZ1 582 aaKnown RBP28.45■■■□□ 2.14
UPF3A-202ENST00000375299 CARMIL2Q6F5E8 1435 aa28.45■■■□□ 2.14
UPF3A-202ENST00000375299 RALGAPBQ86X10 1494 aa28.44■■■□□ 2.14
UPF3A-202ENST00000375299 NUP160Q12769 1436 aa28.44■■■□□ 2.14
UPF3A-202ENST00000375299 UHRF1BP1Q6BDS2 1440 aa28.44■■■□□ 2.14
UPF3A-202ENST00000375299 FBLN2P98095 1184 aa28.43■■■□□ 2.14
UPF3A-202ENST00000375299 TMC1Q8TDI8 760 aa28.43■■■□□ 2.14
UPF3A-202ENST00000375299 JPH4Q96JJ6 628 aa28.42■■■□□ 2.14
UPF3A-202ENST00000375299 LRPPRCP42704 1394 aaKnown RBP28.4■■■□□ 2.14
UPF3A-202ENST00000375299 KIF15Q9NS87 1388 aa28.4■■■□□ 2.14
UPF3A-202ENST00000375299 PKD2Q13563 968 aa28.39■■■□□ 2.14
UPF3A-202ENST00000375299 ZBTB47Q9UFB7 747 aaPredicted RBP28.37■■■□□ 2.13
UPF3A-202ENST00000375299 ZNF777Q9ULD5 760 aaPredicted RBP28.37■■■□□ 2.13
UPF3A-202ENST00000375299 BRD4O60885 1362 aaPredicted RBP28.35■■■□□ 2.13
UPF3A-202ENST00000375299 ARHGEF12Q9NZN5 1544 aa28.35■■■□□ 2.13
UPF3A-202ENST00000375299 E9PCH4 1651 aa28.35■■■□□ 2.13
UPF3A-202ENST00000375299 SENP3-EIF4A1A0A087X0R7 540 aa28.35■■■□□ 2.13
UPF3A-202ENST00000375299 KTN1Q86UP2 1357 aaKnown RBP28.34■■■□□ 2.13
UPF3A-202ENST00000375299 ANKRD30AQ9BXX3 1397 aa28.33■■■□□ 2.13
UPF3A-202ENST00000375299 ABCA8O94911 1581 aa28.32■■■□□ 2.12
UPF3A-202ENST00000375299 MYBBP1AQ9BQG0 1328 aaKnown RBP28.32■■■□□ 2.12
UPF3A-202ENST00000375299 CARD11Q9BXL7 1154 aa28.31■■■□□ 2.12
UPF3A-202ENST00000375299 RRP1P56182 461 aaKnown RBP28.3■■■□□ 2.12
UPF3A-202ENST00000375299 ANKRD50Q9ULJ7 1429 aa28.3■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms