RNA–Protein interactions for RNA: ENST00000374673.3

HSPG2-201, Transcript of heparan sulfate proteoglycan 2, humanhuman

TSL 3

Gene HSPG2, Length 538 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-201ENST00000374673 GPATCH8Q9UKJ3 1502 aaKnown RBP23.46■■□□□ 1.35
HSPG2-201ENST00000374673 ARHGAP5Q13017 1502 aa23.45■■□□□ 1.34
HSPG2-201ENST00000374673 CCNB3Q8WWL7 1395 aa23.45■■□□□ 1.34
HSPG2-201ENST00000374673 PHLDB1Q86UU1 1377 aa23.44■■□□□ 1.34
HSPG2-201ENST00000374673 KDM6BO15054 1643 aa23.43■■□□□ 1.34
HSPG2-201ENST00000374673 EFCAB2Q5VUJ9 269 aa23.4■■□□□ 1.34
HSPG2-201ENST00000374673 AKNAQ7Z591 1439 aa23.4■■□□□ 1.34
HSPG2-201ENST00000374673 COL17A1Q9UMD9 1497 aaPredicted RBP23.36■■□□□ 1.33
HSPG2-201ENST00000374673 SAMD9LQ8IVG5 1584 aa23.35■■□□□ 1.33
HSPG2-201ENST00000374673 ADGRL1O94910 1474 aa23.35■■□□□ 1.33
HSPG2-201ENST00000374673 MYOM3Q5VTT5 1437 aa23.34■■□□□ 1.33
HSPG2-201ENST00000374673 CFDP1Q9UEE9 299 aaPredicted RBP23.34■■□□□ 1.33
HSPG2-201ENST00000374673 ABCC1P33527 1531 aa23.33■■□□□ 1.33
HSPG2-201ENST00000374673 RICTORQ6R327 1708 aa23.31■■□□□ 1.32
HSPG2-201ENST00000374673 MIA2Q96PC5 1412 aa23.31■■□□□ 1.32
HSPG2-201ENST00000374673 DENND4BO75064 1496 aaPredicted RBP23.3■■□□□ 1.32
HSPG2-201ENST00000374673 PLEKHH2Q8IVE3 1493 aa23.3■■□□□ 1.32
HSPG2-201ENST00000374673 FRMPD1Q5SYB0 1578 aa23.29■■□□□ 1.32
HSPG2-201ENST00000374673 SCAPERQ9BY12 1400 aa23.29■■□□□ 1.32
HSPG2-201ENST00000374673 ZNF777Q9ULD5 760 aaPredicted RBP23.27■■□□□ 1.32
HSPG2-201ENST00000374673 KIAA1107Q9UPP5 1409 aa23.26■■□□□ 1.31
HSPG2-201ENST00000374673 CAMSAP2Q08AD1 1489 aa23.26■■□□□ 1.31
HSPG2-201ENST00000374673 SYCP2Q9BX26 1530 aa23.26■■□□□ 1.31
HSPG2-201ENST00000374673 ARHGEF12Q9NZN5 1544 aa23.26■■□□□ 1.31
HSPG2-201ENST00000374673 POGZQ7Z3K3 1410 aa23.25■■□□□ 1.31
HSPG2-201ENST00000374673 PPARGC1BQ86YN6 1023 aaKnown RBP23.25■■□□□ 1.31
HSPG2-201ENST00000374673 FGD6Q6ZV73 1430 aa23.24■■□□□ 1.31
HSPG2-201ENST00000374673 PTPN23Q9H3S7 1636 aa23.23■■□□□ 1.31
HSPG2-201ENST00000374673 ZNF644Q9H582 1327 aaPredicted RBP23.22■■□□□ 1.31
HSPG2-201ENST00000374673 ZNF518AQ6AHZ1 1483 aa23.22■■□□□ 1.31
HSPG2-201ENST00000374673 ZMYM4Q5VZL5 1548 aa23.22■■□□□ 1.31
HSPG2-201ENST00000374673 KDM5CP41229 1560 aa23.22■■□□□ 1.31
HSPG2-201ENST00000374673 RAPGEF3O95398 923 aa23.21■■□□□ 1.31
HSPG2-201ENST00000374673 TCOF1Q13428 1488 aaKnown RBP23.2■■□□□ 1.3
HSPG2-201ENST00000374673 MBD5Q9P267 1494 aa23.19■■□□□ 1.3
HSPG2-201ENST00000374673 TRAPPC8Q9Y2L5 1435 aa23.19■■□□□ 1.3
HSPG2-201ENST00000374673 ARHGEF5Q12774 1597 aa23.18■■□□□ 1.3
HSPG2-201ENST00000374673 HNRNPMP52272 730 aaKnown RBP eCLIP23.16■■□□□ 1.3
HSPG2-201ENST00000374673 HECW2Q9P2P5 1572 aa23.14■■□□□ 1.3
HSPG2-201ENST00000374673 MAGI2Q86UL8 1455 aa23.14■■□□□ 1.29
HSPG2-201ENST00000374673 AFAP1Q8N556 730 aa23.14■■□□□ 1.29
HSPG2-201ENST00000374673 CCDC141Q6ZP82 1450 aa23.13■■□□□ 1.29
HSPG2-201ENST00000374673 RSPH4AQ5TD94 716 aa23.12■■□□□ 1.29
HSPG2-201ENST00000374673 MLH3Q9UHC1 1453 aa23.11■■□□□ 1.29
HSPG2-201ENST00000374673 ARHGEF40Q8TER5 1519 aa23.11■■□□□ 1.29
HSPG2-201ENST00000374673 ZFYVE16Q7Z3T8 1539 aa23.1■■□□□ 1.29
HSPG2-201ENST00000374673 DNMT1P26358 1616 aaKnown RBP23.1■■□□□ 1.29
HSPG2-201ENST00000374673 INO80Q9ULG1 1556 aaPredicted RBP23.1■■□□□ 1.29
HSPG2-201ENST00000374673 CROCC2H7BZ55 1655 aa23.09■■□□□ 1.29
HSPG2-201ENST00000374673 KIDINS220Q9ULH0 1771 aa23.09■■□□□ 1.29
HSPG2-201ENST00000374673 RRBP1Q9P2E9 1410 aaKnown RBP23.08■■□□□ 1.29
HSPG2-201ENST00000374673 ATP7AQ04656 1500 aa23.07■■□□□ 1.28
HSPG2-201ENST00000374673 MAST1Q9Y2H9 1570 aa23.06■■□□□ 1.28
HSPG2-201ENST00000374673 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.06■■□□□ 1.28
HSPG2-201ENST00000374673 YEATS2Q9ULM3 1422 aa23.06■■□□□ 1.28
HSPG2-201ENST00000374673 SPAG9O60271 1321 aaKnown RBP23.05■■□□□ 1.28
HSPG2-201ENST00000374673 ABCA6Q8N139 1617 aa23.04■■□□□ 1.28
HSPG2-201ENST00000374673 RTEL1-TNFRSF6BF6WH68 1400 aa23.04■■□□□ 1.28
HSPG2-201ENST00000374673 DAPK1P53355 1430 aa23.04■■□□□ 1.28
HSPG2-201ENST00000374673 DIP2CQ9Y2E4 1556 aa23.04■■□□□ 1.28
HSPG2-201ENST00000374673 ABCC5O15440 1437 aa23.03■■□□□ 1.28
HSPG2-201ENST00000374673 FAM50AQ14320 339 aaKnown RBP23.03■■□□□ 1.28
HSPG2-201ENST00000374673 SHANK2Q9UPX8 1470 aa23.03■■□□□ 1.28
HSPG2-201ENST00000374673 TSPY4P0CV99 314 aa23■■□□□ 1.27
HSPG2-201ENST00000374673 TSPY10P0CW01 314 aa23■■□□□ 1.27
HSPG2-201ENST00000374673 ATP10AO60312 1499 aa22.99■■□□□ 1.27
HSPG2-201ENST00000374673 REREQ9P2R6 1566 aa22.99■■□□□ 1.27
HSPG2-201ENST00000374673 MYT1LQ9UL68 1186 aa22.99■■□□□ 1.27
HSPG2-201ENST00000374673 ADGBQ8N7X0 1667 aa22.99■■□□□ 1.27
HSPG2-201ENST00000374673 C9orf84Q5VXU9 1444 aa22.99■■□□□ 1.27
HSPG2-201ENST00000374673 PLXNC1O60486 1568 aa22.97■■□□□ 1.27
HSPG2-201ENST00000374673 SIGLEC1Q9BZZ2 1709 aa22.95■■□□□ 1.26
HSPG2-201ENST00000374673 ADGRL2O95490 1459 aa22.92■■□□□ 1.26
HSPG2-201ENST00000374673 PTPRKQ15262 1439 aa22.91■■□□□ 1.26
HSPG2-201ENST00000374673 A2MP01023 1474 aa22.9■■□□□ 1.26
HSPG2-201ENST00000374673 AGLP35573 1532 aa22.89■■□□□ 1.26
HSPG2-201ENST00000374673 ANKRD30AQ9BXX3 1397 aa22.87■■□□□ 1.25
HSPG2-201ENST00000374673 DHX29Q7Z478 1369 aaKnown RBP22.86■■□□□ 1.25
HSPG2-201ENST00000374673 NCOA1Q15788 1441 aa22.85■■□□□ 1.25
HSPG2-201ENST00000374673 CHIC2Q9UKJ5 165 aa22.85■■□□□ 1.25
HSPG2-201ENST00000374673 DUOX2Q9NRD8 1548 aa22.85■■□□□ 1.25
HSPG2-201ENST00000374673 BCORL1Q5H9F3 1711 aa22.85■■□□□ 1.25
HSPG2-201ENST00000374673 ROCK1Q13464 1354 aa22.84■■□□□ 1.25
HSPG2-201ENST00000374673 KIF15Q9NS87 1388 aa22.83■■□□□ 1.25
HSPG2-201ENST00000374673 EIF2AK4Q9P2K8 1649 aaKnown RBP22.82■■□□□ 1.24
HSPG2-201ENST00000374673 ITGAEP38570 1179 aa22.82■■□□□ 1.24
HSPG2-201ENST00000374673 ARID4BQ4LE39 1312 aaPredicted RBP22.81■■□□□ 1.24
HSPG2-201ENST00000374673 RRP7BPQ9NSQ0 103 aa22.79■■□□□ 1.24
HSPG2-201ENST00000374673 ERBINQ96RT1 1412 aa22.79■■□□□ 1.24
HSPG2-201ENST00000374673 ADAMTSL3P82987 1691 aa22.78■■□□□ 1.24
HSPG2-201ENST00000374673 RNF17Q9BXT8 1623 aaKnown RBP22.75■■□□□ 1.23
HSPG2-201ENST00000374673 GCC2Q8IWJ2 1684 aa22.74■■□□□ 1.23
HSPG2-201ENST00000374673 FER1L4A9Z1Z3 1794 aa22.73■■□□□ 1.23
HSPG2-201ENST00000374673 MADDQ8WXG6 1647 aa22.72■■□□□ 1.23
HSPG2-201ENST00000374673 ANKRD50Q9ULJ7 1429 aa22.72■■□□□ 1.23
HSPG2-201ENST00000374673 KIF3BO15066 747 aa22.7■■□□□ 1.22
HSPG2-201ENST00000374673 MLECQ14165 292 aa22.7■■□□□ 1.22
HSPG2-201ENST00000374673 DEPDC5O75140 1603 aa22.7■■□□□ 1.22
HSPG2-201ENST00000374673 HFM1A2PYH4 1435 aa22.69■■□□□ 1.22
HSPG2-201ENST00000374673 MROH1Q8NDA8 1641 aa22.68■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms