RNA–Protein interactions for RNA: ENST00000373887.7

TRAF1-201, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 6,324 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-201ENST00000373887 FGD1P98174 961 aa18.45■□□□□ 0.54
TRAF1-201ENST00000373887 OS9Q13438 667 aaPredicted RBP18.44■□□□□ 0.54
TRAF1-201ENST00000373887 CCDC9Q9Y3X0 531 aaKnown RBP18.43■□□□□ 0.54
TRAF1-201ENST00000373887 TMF1P82094 1093 aa18.42■□□□□ 0.54
TRAF1-201ENST00000373887 PKD2Q13563 968 aa18.42■□□□□ 0.54
TRAF1-201ENST00000373887 ZNF330Q9Y3S2 320 aaPredicted RBP18.41■□□□□ 0.54
TRAF1-201ENST00000373887 HNRNPMP52272 730 aaKnown RBP eCLIP18.41■□□□□ 0.54
TRAF1-201ENST00000373887 CSB-PGBD3P0DP91 1061 aa18.41■□□□□ 0.54
TRAF1-201ENST00000373887 KANK4Q5T7N3 995 aaPredicted RBP18.39■□□□□ 0.53
TRAF1-201ENST00000373887 KCNJ4P48050 445 aa18.39■□□□□ 0.53
TRAF1-201ENST00000373887 SPRYD3Q8NCJ5 442 aa18.39■□□□□ 0.53
TRAF1-201ENST00000373887 MORC1Q86VD1 984 aa18.38■□□□□ 0.53
TRAF1-201ENST00000373887 NUTM2FA1L443 756 aa18.38■□□□□ 0.53
TRAF1-201ENST00000373887 CYB5RLQ6IPT4 315 aa18.38■□□□□ 0.53
TRAF1-201ENST00000373887 KIF3BO15066 747 aa18.38■□□□□ 0.53
TRAF1-201ENST00000373887 NOP58Q9Y2X3 529 aaKnown RBP18.37■□□□□ 0.53
TRAF1-201ENST00000373887 GOLGA2Q08379 1002 aa18.37■□□□□ 0.53
TRAF1-201ENST00000373887 SMARCA2P51531 1590 aa18.36■□□□□ 0.53
TRAF1-201ENST00000373887 ARHGAP35Q9NRY4 1499 aa18.35■□□□□ 0.53
TRAF1-201ENST00000373887 EFCAB2Q5VUJ9 269 aa18.35■□□□□ 0.53
TRAF1-201ENST00000373887 DRC7Q8IY82 874 aa18.35■□□□□ 0.53
TRAF1-201ENST00000373887 ARID3AQ99856 593 aa18.35■□□□□ 0.53
TRAF1-201ENST00000373887 CHAF1AQ13111 956 aaPredicted RBP18.34■□□□□ 0.53
TRAF1-201ENST00000373887 NRDCO43847 1150 aa18.33■□□□□ 0.53
TRAF1-201ENST00000373887 GOLGA6L4A6NEF3 574 aa18.33■□□□□ 0.52
TRAF1-201ENST00000373887 MSNP26038 577 aaKnown RBP18.31■□□□□ 0.52
TRAF1-201ENST00000373887 WIZO95785 1651 aa18.3■□□□□ 0.52
TRAF1-201ENST00000373887 HDGFL2Q7Z4V5 671 aaPredicted RBP18.3■□□□□ 0.52
TRAF1-201ENST00000373887 RTF1Q92541 710 aaKnown RBP18.3■□□□□ 0.52
TRAF1-201ENST00000373887 NUP155O75694 1391 aa18.29■□□□□ 0.52
TRAF1-201ENST00000373887 ISY1Q9ULR0 285 aaKnown RBP18.29■□□□□ 0.52
TRAF1-201ENST00000373887 WASHC2CQ9Y4E1 1318 aa18.27■□□□□ 0.52
TRAF1-201ENST00000373887 HSCBQ8IWL3 235 aa18.27■□□□□ 0.51
TRAF1-201ENST00000373887 APBB1O00213 710 aa18.26■□□□□ 0.51
TRAF1-201ENST00000373887 HSPA5P11021 654 aaKnown RBP18.26■□□□□ 0.51
TRAF1-201ENST00000373887 PNNQ9H307 717 aaKnown RBP18.25■□□□□ 0.51
TRAF1-201ENST00000373887 B4GALNT3Q6L9W6 998 aa18.25■□□□□ 0.51
TRAF1-201ENST00000373887 FHOD3Q2V2M9 1422 aa18.25■□□□□ 0.51
TRAF1-201ENST00000373887 ROCK2O75116 1388 aaKnown RBP18.24■□□□□ 0.51
TRAF1-201ENST00000373887 EID1Q9Y6B2 187 aa18.24■□□□□ 0.51
TRAF1-201ENST00000373887 JPH4Q96JJ6 628 aa18.24■□□□□ 0.51
TRAF1-201ENST00000373887 PPP4R2Q9NY27 417 aa18.24■□□□□ 0.51
TRAF1-201ENST00000373887 LTV1Q96GA3 475 aaPredicted RBP18.22■□□□□ 0.51
TRAF1-201ENST00000373887 SPAG9O60271 1321 aaKnown RBP18.22■□□□□ 0.51
TRAF1-201ENST00000373887 SETD5Q9C0A6 1442 aa18.22■□□□□ 0.51
TRAF1-201ENST00000373887 MPHOSPH9Q99550 1183 aa18.21■□□□□ 0.51
TRAF1-201ENST00000373887 CADPSQ9ULU8 1353 aa18.21■□□□□ 0.51
TRAF1-201ENST00000373887 NGDNQ8NEJ9 315 aaKnown RBP18.19■□□□□ 0.5
TRAF1-201ENST00000373887 DEKP35659 375 aaKnown RBP18.19■□□□□ 0.5
TRAF1-201ENST00000373887 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.19■□□□□ 0.5
TRAF1-201ENST00000373887 U2AF1L5P0DN76 240 aaPredicted RBP18.18■□□□□ 0.5
TRAF1-201ENST00000373887 U2AF1Q01081 240 aaKnown RBP eCLIP18.18■□□□□ 0.5
TRAF1-201ENST00000373887 GNL2Q13823 731 aaKnown RBP18.18■□□□□ 0.5
TRAF1-201ENST00000373887 ANKRD30AQ9BXX3 1397 aa18.18■□□□□ 0.5
TRAF1-201ENST00000373887 AEBP2Q6ZN18 517 aaPredicted RBP18.18■□□□□ 0.5
TRAF1-201ENST00000373887 PDE4CQ08493 712 aa18.17■□□□□ 0.5
TRAF1-201ENST00000373887 NOC3LQ8WTT2 800 aaKnown RBP18.17■□□□□ 0.5
TRAF1-201ENST00000373887 L1TD1Q5T7N2 865 aaKnown RBP18.16■□□□□ 0.5
TRAF1-201ENST00000373887 FMN1Q68DA7 1419 aa18.16■□□□□ 0.5
TRAF1-201ENST00000373887 PRM3Q9NNZ6 103 aa18.15■□□□□ 0.5
TRAF1-201ENST00000373887 MCCP23508 829 aa18.14■□□□□ 0.5
TRAF1-201ENST00000373887 VPS8Q8N3P4 1428 aa18.14■□□□□ 0.49
TRAF1-201ENST00000373887 TRAK1Q9UPV9 953 aa18.13■□□□□ 0.49
TRAF1-201ENST00000373887 OSCARQ8IYS5 282 aa18.13■□□□□ 0.49
TRAF1-201ENST00000373887 CHMP4BQ9H444 224 aaKnown RBP18.13■□□□□ 0.49
TRAF1-201ENST00000373887 GZF1Q9H116 711 aaPredicted RBP18.13■□□□□ 0.49
TRAF1-201ENST00000373887 KIAA2012Q0VF49 1180 aa18.12■□□□□ 0.49
TRAF1-201ENST00000373887 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.12■□□□□ 0.49
TRAF1-201ENST00000373887 CHMP3Q9Y3E7 222 aa18.12■□□□□ 0.49
TRAF1-201ENST00000373887 TOP2AP11388 1531 aaKnown RBP18.1■□□□□ 0.49
TRAF1-201ENST00000373887 KTN1Q86UP2 1357 aaKnown RBP18.1■□□□□ 0.49
TRAF1-201ENST00000373887 MS4A1P11836 297 aa18.09■□□□□ 0.49
TRAF1-201ENST00000373887 RAB3GAP2Q9H2M9 1393 aa18.09■□□□□ 0.49
TRAF1-201ENST00000373887 RAPGEF2Q9Y4G8 1499 aa18.09■□□□□ 0.49
TRAF1-201ENST00000373887 FANCD2Q9BXW9 1451 aa18.09■□□□□ 0.49
TRAF1-201ENST00000373887 AMPHP49418 695 aa18.08■□□□□ 0.49
TRAF1-201ENST00000373887 CCDC146Q8IYE0 955 aa18.08■□□□□ 0.48
TRAF1-201ENST00000373887 TNNT3P45378 269 aaPredicted RBP18.06■□□□□ 0.48
TRAF1-201ENST00000373887 FAM69CQ0P6D2 419 aa18.05■□□□□ 0.48
TRAF1-201ENST00000373887 ATAD2BQ9ULI0 1458 aa18.04■□□□□ 0.48
TRAF1-201ENST00000373887 A0A0U1RQG5 324 aaPredicted RBP18.04■□□□□ 0.48
TRAF1-201ENST00000373887 ITPRIPQ8IWB1 547 aa18.03■□□□□ 0.48
TRAF1-201ENST00000373887 TMX4Q9H1E5 349 aaPredicted RBP18.03■□□□□ 0.48
TRAF1-201ENST00000373887 PTPRGP23470 1445 aa18.03■□□□□ 0.48
TRAF1-201ENST00000373887 ANO8Q9HCE9 1232 aaPredicted RBP18.03■□□□□ 0.48
TRAF1-201ENST00000373887 CCDC18Q5T9S5 1454 aa18.02■□□□□ 0.48
TRAF1-201ENST00000373887 TERF2IPQ9NYB0 399 aa18.02■□□□□ 0.47
TRAF1-201ENST00000373887 HSP90B1P14625 803 aaKnown RBP18.02■□□□□ 0.47
TRAF1-201ENST00000373887 EIF3AQ14152 1382 aaKnown RBP18.01■□□□□ 0.47
TRAF1-201ENST00000373887 SLKQ9H2G2 1235 aaPredicted RBP18.01■□□□□ 0.47
TRAF1-201ENST00000373887 MSH5O43196 834 aa18■□□□□ 0.47
TRAF1-201ENST00000373887 EVA1CP58658 441 aa18■□□□□ 0.47
TRAF1-201ENST00000373887 SLC4A10Q6U841 1118 aa18■□□□□ 0.47
TRAF1-201ENST00000373887 KIAA1211Q6ZU35 1233 aa18■□□□□ 0.47
TRAF1-201ENST00000373887 L3MBTL2Q969R5 705 aa18■□□□□ 0.47
TRAF1-201ENST00000373887 TAF7LQ5H9L4 462 aa17.99■□□□□ 0.47
TRAF1-201ENST00000373887 G3V3G9 751 aa17.99■□□□□ 0.47
TRAF1-201ENST00000373887 DCAF8Q5TAQ9 597 aa17.99■□□□□ 0.47
TRAF1-201ENST00000373887 MEX3CQ5U5Q3 659 aaKnown RBP17.99■□□□□ 0.47
TRAF1-201ENST00000373887 CREBRFQ8IUR6 639 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms