RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 SUPT6HQ7KZ85 1726 aaKnown RBP23.8■■□□□ 1.4
SMPDL3A-201ENST00000368440 FRMPD1Q5SYB0 1578 aa23.8■■□□□ 1.4
SMPDL3A-201ENST00000368440 KANK4Q5T7N3 995 aaPredicted RBP23.78■■□□□ 1.4
SMPDL3A-201ENST00000368440 GPATCH8Q9UKJ3 1502 aaKnown RBP23.78■■□□□ 1.4
SMPDL3A-201ENST00000368440 RICTORQ6R327 1708 aa23.77■■□□□ 1.4
SMPDL3A-201ENST00000368440 ADGRL1O94910 1474 aa23.75■■□□□ 1.39
SMPDL3A-201ENST00000368440 NCOA2Q15596 1464 aa23.75■■□□□ 1.39
SMPDL3A-201ENST00000368440 EFCAB2Q5VUJ9 269 aa23.75■■□□□ 1.39
SMPDL3A-201ENST00000368440 RAPGEF3O95398 923 aa23.74■■□□□ 1.39
SMPDL3A-201ENST00000368440 ITSN2Q9NZM3 1697 aa23.73■■□□□ 1.39
SMPDL3A-201ENST00000368440 CCNB3Q8WWL7 1395 aa23.73■■□□□ 1.39
SMPDL3A-201ENST00000368440 DENND4BO75064 1496 aaPredicted RBP23.72■■□□□ 1.39
SMPDL3A-201ENST00000368440 SCAPERQ9BY12 1400 aa23.71■■□□□ 1.39
SMPDL3A-201ENST00000368440 SAMD9LQ8IVG5 1584 aa23.71■■□□□ 1.39
SMPDL3A-201ENST00000368440 APLP2Q06481 763 aa23.7■■□□□ 1.38
SMPDL3A-201ENST00000368440 ABCC1P33527 1531 aa23.7■■□□□ 1.38
SMPDL3A-201ENST00000368440 ARHGEF12Q9NZN5 1544 aa23.67■■□□□ 1.38
SMPDL3A-201ENST00000368440 POGZQ7Z3K3 1410 aa23.67■■□□□ 1.38
SMPDL3A-201ENST00000368440 ZNF777Q9ULD5 760 aaPredicted RBP23.64■■□□□ 1.38
SMPDL3A-201ENST00000368440 ZMYM4Q5VZL5 1548 aa23.64■■□□□ 1.37
SMPDL3A-201ENST00000368440 CFDP1Q9UEE9 299 aaPredicted RBP23.64■■□□□ 1.37
SMPDL3A-201ENST00000368440 SYCP2Q9BX26 1530 aa23.62■■□□□ 1.37
SMPDL3A-201ENST00000368440 TRAPPC8Q9Y2L5 1435 aa23.6■■□□□ 1.37
SMPDL3A-201ENST00000368440 KDM5CP41229 1560 aa23.6■■□□□ 1.37
SMPDL3A-201ENST00000368440 ZNF518AQ6AHZ1 1483 aa23.59■■□□□ 1.37
SMPDL3A-201ENST00000368440 ARHGEF40Q8TER5 1519 aa23.59■■□□□ 1.37
SMPDL3A-201ENST00000368440 ZNF644Q9H582 1327 aaPredicted RBP23.58■■□□□ 1.37
SMPDL3A-201ENST00000368440 AFAP1Q8N556 730 aa23.56■■□□□ 1.36
SMPDL3A-201ENST00000368440 YEATS2Q9ULM3 1422 aa23.56■■□□□ 1.36
SMPDL3A-201ENST00000368440 ZFYVE16Q7Z3T8 1539 aa23.55■■□□□ 1.36
SMPDL3A-201ENST00000368440 CAMSAP2Q08AD1 1489 aa23.55■■□□□ 1.36
SMPDL3A-201ENST00000368440 MYOM3Q5VTT5 1437 aa23.55■■□□□ 1.36
SMPDL3A-201ENST00000368440 PLEKHH2Q8IVE3 1493 aa23.55■■□□□ 1.36
SMPDL3A-201ENST00000368440 HECW2Q9P2P5 1572 aa23.54■■□□□ 1.36
SMPDL3A-201ENST00000368440 HNRNPMP52272 730 aaKnown RBP eCLIP23.54■■□□□ 1.36
SMPDL3A-201ENST00000368440 KIAA1107Q9UPP5 1409 aa23.54■■□□□ 1.36
SMPDL3A-201ENST00000368440 MAGI2Q86UL8 1455 aa23.52■■□□□ 1.36
SMPDL3A-201ENST00000368440 SIGLEC1Q9BZZ2 1709 aa23.51■■□□□ 1.35
SMPDL3A-201ENST00000368440 MBD5Q9P267 1494 aa23.51■■□□□ 1.35
SMPDL3A-201ENST00000368440 KIDINS220Q9ULH0 1771 aa23.49■■□□□ 1.35
SMPDL3A-201ENST00000368440 ABCA6Q8N139 1617 aa23.49■■□□□ 1.35
SMPDL3A-201ENST00000368440 MIA2Q96PC5 1412 aa23.48■■□□□ 1.35
SMPDL3A-201ENST00000368440 MLH3Q9UHC1 1453 aa23.48■■□□□ 1.35
SMPDL3A-201ENST00000368440 PPARGC1BQ86YN6 1023 aaKnown RBP23.47■■□□□ 1.35
SMPDL3A-201ENST00000368440 DIP2CQ9Y2E4 1556 aa23.47■■□□□ 1.35
SMPDL3A-201ENST00000368440 PTPN23Q9H3S7 1636 aa23.46■■□□□ 1.35
SMPDL3A-201ENST00000368440 INO80Q9ULG1 1556 aaPredicted RBP23.46■■□□□ 1.35
SMPDL3A-201ENST00000368440 FGD6Q6ZV73 1430 aa23.44■■□□□ 1.34
SMPDL3A-201ENST00000368440 ARHGEF5Q12774 1597 aa23.43■■□□□ 1.34
SMPDL3A-201ENST00000368440 MYT1LQ9UL68 1186 aa23.43■■□□□ 1.34
SMPDL3A-201ENST00000368440 ATP7AQ04656 1500 aa23.42■■□□□ 1.34
SMPDL3A-201ENST00000368440 CCDC141Q6ZP82 1450 aa23.42■■□□□ 1.34
SMPDL3A-201ENST00000368440 ATP10AO60312 1499 aa23.41■■□□□ 1.34
SMPDL3A-201ENST00000368440 SPAG9O60271 1321 aaKnown RBP23.41■■□□□ 1.34
SMPDL3A-201ENST00000368440 KDM4FA0A1W2PPD8 638 aa23.41■■□□□ 1.34
SMPDL3A-201ENST00000368440 C9orf84Q5VXU9 1444 aa23.39■■□□□ 1.34
SMPDL3A-201ENST00000368440 TCOF1Q13428 1488 aaKnown RBP23.38■■□□□ 1.33
SMPDL3A-201ENST00000368440 BCORL1Q5H9F3 1711 aa23.38■■□□□ 1.33
SMPDL3A-201ENST00000368440 REREQ9P2R6 1566 aa23.36■■□□□ 1.33
SMPDL3A-201ENST00000368440 ARID4BQ4LE39 1312 aaPredicted RBP23.35■■□□□ 1.33
SMPDL3A-201ENST00000368440 CROCC2H7BZ55 1655 aa23.34■■□□□ 1.33
SMPDL3A-201ENST00000368440 ADGBQ8N7X0 1667 aa23.34■■□□□ 1.33
SMPDL3A-201ENST00000368440 ADAMTSL3P82987 1691 aa23.33■■□□□ 1.33
SMPDL3A-201ENST00000368440 DNMT1P26358 1616 aaKnown RBP23.33■■□□□ 1.32
SMPDL3A-201ENST00000368440 RTEL1-TNFRSF6BF6WH68 1400 aa23.31■■□□□ 1.32
SMPDL3A-201ENST00000368440 MAST1Q9Y2H9 1570 aa23.31■■□□□ 1.32
SMPDL3A-201ENST00000368440 RSPH4AQ5TD94 716 aa23.31■■□□□ 1.32
SMPDL3A-201ENST00000368440 PLXNC1O60486 1568 aa23.29■■□□□ 1.32
SMPDL3A-201ENST00000368440 MADDQ8WXG6 1647 aa23.29■■□□□ 1.32
SMPDL3A-201ENST00000368440 ABCC5O15440 1437 aa23.28■■□□□ 1.32
SMPDL3A-201ENST00000368440 DAPK1P53355 1430 aa23.28■■□□□ 1.32
SMPDL3A-201ENST00000368440 A2MP01023 1474 aa23.27■■□□□ 1.31
SMPDL3A-201ENST00000368440 AGLP35573 1532 aa23.26■■□□□ 1.31
SMPDL3A-201ENST00000368440 TSPY4P0CV99 314 aa23.26■■□□□ 1.31
SMPDL3A-201ENST00000368440 TSPY10P0CW01 314 aa23.26■■□□□ 1.31
SMPDL3A-201ENST00000368440 MLECQ14165 292 aa23.25■■□□□ 1.31
SMPDL3A-201ENST00000368440 FAM50AQ14320 339 aaKnown RBP23.25■■□□□ 1.31
SMPDL3A-201ENST00000368440 SHANK2Q9UPX8 1470 aa23.24■■□□□ 1.31
SMPDL3A-201ENST00000368440 FER1L4A9Z1Z3 1794 aa23.23■■□□□ 1.31
SMPDL3A-201ENST00000368440 RIMS1Q86UR5 1692 aaKnown RBP23.23■■□□□ 1.31
SMPDL3A-201ENST00000368440 AEBP2Q6ZN18 517 aaPredicted RBP23.19■■□□□ 1.3
SMPDL3A-201ENST00000368440 DHX29Q7Z478 1369 aaKnown RBP23.18■■□□□ 1.3
SMPDL3A-201ENST00000368440 RRBP1Q9P2E9 1410 aaKnown RBP23.16■■□□□ 1.3
SMPDL3A-201ENST00000368440 PTPRMP28827 1452 aa23.15■■□□□ 1.3
SMPDL3A-201ENST00000368440 CHIC2Q9UKJ5 165 aa23.15■■□□□ 1.3
SMPDL3A-201ENST00000368440 PTPRKQ15262 1439 aa23.14■■□□□ 1.3
SMPDL3A-201ENST00000368440 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.12■■□□□ 1.29
SMPDL3A-201ENST00000368440 ADGRL2O95490 1459 aa23.12■■□□□ 1.29
SMPDL3A-201ENST00000368440 DUOX2Q9NRD8 1548 aa23.12■■□□□ 1.29
SMPDL3A-201ENST00000368440 KIF15Q9NS87 1388 aa23.12■■□□□ 1.29
SMPDL3A-201ENST00000368440 EIF2AK4Q9P2K8 1649 aaKnown RBP23.1■■□□□ 1.29
SMPDL3A-201ENST00000368440 RRP7BPQ9NSQ0 103 aa23.1■■□□□ 1.29
SMPDL3A-201ENST00000368440 NCOA1Q15788 1441 aa23.09■■□□□ 1.29
SMPDL3A-201ENST00000368440 ANKRD30AQ9BXX3 1397 aa23.08■■□□□ 1.28
SMPDL3A-201ENST00000368440 CLTCQ00610 1675 aaKnown RBP23.08■■□□□ 1.28
SMPDL3A-201ENST00000368440 KIF3BO15066 747 aa23.07■■□□□ 1.28
SMPDL3A-201ENST00000368440 ITGAEP38570 1179 aa23.07■■□□□ 1.28
SMPDL3A-201ENST00000368440 GGT6Q6P531 493 aa23.07■■□□□ 1.28
SMPDL3A-201ENST00000368440 RNF17Q9BXT8 1623 aaKnown RBP23.06■■□□□ 1.28
SMPDL3A-201ENST00000368440 C3P01024 1663 aa23.05■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms