RNA–Protein interactions for RNA: ENST00000367255.9

SYNE1-207, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SYNE1, Length 27,748 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-207ENST00000367255 PES1O00541 588 aaKnown RBP4.8□□□□□ -1.64
SYNE1-207ENST00000367255 MCM5P33992 734 aa4.8□□□□□ -1.64
SYNE1-207ENST00000367255 CAVIN2O95810 425 aa4.79□□□□□ -1.64
SYNE1-207ENST00000367255 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP4.79□□□□□ -1.64
SYNE1-207ENST00000367255 PDCL2Q8N4E4 241 aa4.79□□□□□ -1.64
SYNE1-207ENST00000367255 TSHZ2Q9NRE2 1034 aa4.79□□□□□ -1.64
SYNE1-207ENST00000367255 KDM2AQ9Y2K7 1162 aa4.79□□□□□ -1.64
SYNE1-207ENST00000367255 RSPH4AQ5TD94 716 aa4.79□□□□□ -1.64
SYNE1-207ENST00000367255 RBM19Q9Y4C8 960 aaKnown RBP4.78□□□□□ -1.64
SYNE1-207ENST00000367255 CALD1Q05682 793 aaKnown RBP4.78□□□□□ -1.64
SYNE1-207ENST00000367255 MTUS2Q5JR59 1369 aa4.78□□□□□ -1.64
SYNE1-207ENST00000367255 DDX11L8A8MPP1 907 aa4.78□□□□□ -1.64
SYNE1-207ENST00000367255 POLR3GO15318 223 aaPredicted RBP4.78□□□□□ -1.64
SYNE1-207ENST00000367255 TERF1P54274 439 aa4.78□□□□□ -1.64
SYNE1-207ENST00000367255 PPP4R2Q9NY27 417 aa4.78□□□□□ -1.64
SYNE1-207ENST00000367255 CAGE1Q8TC20 777 aa4.78□□□□□ -1.64
SYNE1-207ENST00000367255 GZF1Q9H116 711 aaPredicted RBP4.78□□□□□ -1.64
SYNE1-207ENST00000367255 PODXL2Q9NZ53 605 aa4.78□□□□□ -1.64
SYNE1-207ENST00000367255 RRP9O43818 475 aaKnown RBP4.77□□□□□ -1.65
SYNE1-207ENST00000367255 ANKRD30AQ9BXX3 1397 aa4.77□□□□□ -1.65
SYNE1-207ENST00000367255 FAM107BQ9H098 131 aa4.77□□□□□ -1.65
SYNE1-207ENST00000367255 ATP6V1DQ9Y5K8 247 aa4.77□□□□□ -1.65
SYNE1-207ENST00000367255 CEP164Q9UPV0 1460 aa4.77□□□□□ -1.65
SYNE1-207ENST00000367255 RALBP1Q15311 655 aa4.77□□□□□ -1.65
SYNE1-207ENST00000367255 CDK11BP21127 795 aaKnown RBP4.76□□□□□ -1.65
SYNE1-207ENST00000367255 TPM2P07951 284 aa4.76□□□□□ -1.65
SYNE1-207ENST00000367255 CT47B1P0C2W7 299 aaPredicted RBP4.76□□□□□ -1.65
SYNE1-207ENST00000367255 HMGB2P26583 209 aaKnown RBP4.76□□□□□ -1.65
SYNE1-207ENST00000367255 GBP4Q96PP9 640 aa4.76□□□□□ -1.65
SYNE1-207ENST00000367255 MAPK8IP3Q9UPT6 1336 aa4.76□□□□□ -1.65
SYNE1-207ENST00000367255 GPS2Q13227 327 aa4.76□□□□□ -1.65
SYNE1-207ENST00000367255 A6NNZ2 444 aa4.76□□□□□ -1.65
SYNE1-207ENST00000367255 TUBB8Q3ZCM7 444 aa4.76□□□□□ -1.65
SYNE1-207ENST00000367255 HS1BP3Q53T59 392 aa4.76□□□□□ -1.65
SYNE1-207ENST00000367255 MAPK8IP2Q13387 824 aaPredicted RBP4.76□□□□□ -1.65
SYNE1-207ENST00000367255 TUBBP07437 444 aa4.76□□□□□ -1.65
SYNE1-207ENST00000367255 HNRNPUQ00839 825 aaKnown RBP eCLIP4.75□□□□□ -1.65
SYNE1-207ENST00000367255 CTR9Q6PD62 1173 aa4.75□□□□□ -1.65
SYNE1-207ENST00000367255 CCDC18Q5T9S5 1454 aa4.75□□□□□ -1.65
SYNE1-207ENST00000367255 AEBP2Q6ZN18 517 aaPredicted RBP4.75□□□□□ -1.65
SYNE1-207ENST00000367255 SF3B2Q13435 895 aaKnown RBP4.75□□□□□ -1.65
SYNE1-207ENST00000367255 CCDC66A2RUB6 948 aa4.75□□□□□ -1.65
SYNE1-207ENST00000367255 DHX29Q7Z478 1369 aaKnown RBP4.75□□□□□ -1.65
SYNE1-207ENST00000367255 HSP90AA1P07900 732 aaKnown RBP4.74□□□□□ -1.65
SYNE1-207ENST00000367255 NOL10Q9BSC4 688 aaKnown RBP4.74□□□□□ -1.65
SYNE1-207ENST00000367255 USP8P40818 1118 aa4.74□□□□□ -1.65
SYNE1-207ENST00000367255 MYH16Q9H6N6 1097 aa4.74□□□□□ -1.65
SYNE1-207ENST00000367255 KIF3AQ9Y496 699 aa4.74□□□□□ -1.65
SYNE1-207ENST00000367255 TACO1Q9BSH4 297 aaKnown RBP4.74□□□□□ -1.65
SYNE1-207ENST00000367255 ZNF428Q96B54 188 aa4.74□□□□□ -1.65
SYNE1-207ENST00000367255 SIN3AQ96ST3 1273 aa4.74□□□□□ -1.65
SYNE1-207ENST00000367255 PDZRN4Q6ZMN7 1036 aaPredicted RBP4.73□□□□□ -1.65
SYNE1-207ENST00000367255 NOM1Q5C9Z4 860 aaKnown RBP4.73□□□□□ -1.65
SYNE1-207ENST00000367255 CCP110O43303 1012 aa4.73□□□□□ -1.65
SYNE1-207ENST00000367255 DHX37Q8IY37 1157 aaKnown RBP4.73□□□□□ -1.65
SYNE1-207ENST00000367255 FOXD4L5Q5VV16 416 aaPredicted RBP4.73□□□□□ -1.65
SYNE1-207ENST00000367255 FOXD4L4Q8WXT5 416 aaPredicted RBP4.73□□□□□ -1.65
SYNE1-207ENST00000367255 FOXD4L1Q9NU39 408 aa4.73□□□□□ -1.65
SYNE1-207ENST00000367255 VSIG10Q8N0Z9 540 aa4.73□□□□□ -1.65
SYNE1-207ENST00000367255 KIF2AO00139 706 aaPredicted RBP4.73□□□□□ -1.65
SYNE1-207ENST00000367255 FAM184AQ8NB25 1140 aa4.73□□□□□ -1.65
SYNE1-207ENST00000367255 CCNB3Q8WWL7 1395 aa4.73□□□□□ -1.65
SYNE1-207ENST00000367255 HSP90AA2PQ14568 343 aaPredicted RBP4.73□□□□□ -1.65
SYNE1-207ENST00000367255 MPNDQ8N594 471 aa4.72□□□□□ -1.65
SYNE1-207ENST00000367255 TONSLQ96HA7 1378 aa4.72□□□□□ -1.65
SYNE1-207ENST00000367255 PLCD3Q8N3E9 789 aa4.72□□□□□ -1.65
SYNE1-207ENST00000367255 NCBP3Q53F19 620 aaKnown RBP4.72□□□□□ -1.65
SYNE1-207ENST00000367255 CWC15Q9P013 229 aaKnown RBP4.72□□□□□ -1.65
SYNE1-207ENST00000367255 AXDND1Q5T1B0 1012 aaPredicted RBP4.72□□□□□ -1.65
SYNE1-207ENST00000367255 KIAA2012Q0VF49 1180 aa4.72□□□□□ -1.65
SYNE1-207ENST00000367255 CCDC7Q96M83 1385 aa4.72□□□□□ -1.65
SYNE1-207ENST00000367255 ZMYND15Q9H091 742 aa4.71□□□□□ -1.65
SYNE1-207ENST00000367255 CHIC2Q9UKJ5 165 aa4.71□□□□□ -1.65
SYNE1-207ENST00000367255 SETQ01105 290 aaPredicted RBP4.71□□□□□ -1.66
SYNE1-207ENST00000367255 CGNL1Q0VF96 1302 aa4.71□□□□□ -1.66
SYNE1-207ENST00000367255 CIZ1Q9ULV3 898 aaPredicted RBP4.71□□□□□ -1.66
SYNE1-207ENST00000367255 RIPPLY1Q0D2K3 151 aa4.7□□□□□ -1.66
SYNE1-207ENST00000367255 TXLNBQ8N3L3 684 aa4.7□□□□□ -1.66
SYNE1-207ENST00000367255 LETM1O95202 739 aaPredicted RBP4.7□□□□□ -1.66
SYNE1-207ENST00000367255 LMNB2Q03252 620 aa4.7□□□□□ -1.66
SYNE1-207ENST00000367255 E9PSI1 815 aa4.69□□□□□ -1.66
SYNE1-207ENST00000367255 SETD5Q9C0A6 1442 aa4.69□□□□□ -1.66
SYNE1-207ENST00000367255 HMMRO75330 724 aa4.69□□□□□ -1.66
SYNE1-207ENST00000367255 ZBTB9Q96C00 473 aa4.69□□□□□ -1.66
SYNE1-207ENST00000367255 RNF20Q5VTR2 975 aa4.69□□□□□ -1.66
SYNE1-207ENST00000367255 NACADO15069 1562 aa4.69□□□□□ -1.66
SYNE1-207ENST00000367255 GTF2F1P35269 517 aaKnown RBP eCLIP4.69□□□□□ -1.66
SYNE1-207ENST00000367255 ACBD3Q9H3P7 528 aa4.69□□□□□ -1.66
SYNE1-207ENST00000367255 GOLGA6L4A6NEF3 574 aa4.69□□□□□ -1.66
SYNE1-207ENST00000367255 EIF4G2P78344 907 aaKnown RBP eCLIP4.68□□□□□ -1.66
SYNE1-207ENST00000367255 TPM1P09493 284 aa4.68□□□□□ -1.66
SYNE1-207ENST00000367255 IPO8O15397 1037 aaKnown RBP4.68□□□□□ -1.66
SYNE1-207ENST00000367255 CNTLNQ9NXG0 1405 aa4.68□□□□□ -1.66
SYNE1-207ENST00000367255 TEX35Q5T0J7 233 aa4.68□□□□□ -1.66
SYNE1-207ENST00000367255 DIAPH3Q9NSV4 1193 aa4.68□□□□□ -1.66
SYNE1-207ENST00000367255 KIF27Q86VH2 1401 aa4.67□□□□□ -1.66
SYNE1-207ENST00000367255 GTPBP4Q9BZE4 634 aaKnown RBP4.67□□□□□ -1.66
SYNE1-207ENST00000367255 KIF7Q2M1P5 1343 aa4.67□□□□□ -1.66
SYNE1-207ENST00000367255 MEX3CQ5U5Q3 659 aaKnown RBP4.67□□□□□ -1.66
SYNE1-207ENST00000367255 MSNP26038 577 aaKnown RBP4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms