RNA–Protein interactions for RNA: ENST00000364588.1

RNU4-4P-201, Transcript of RNA, U4 small nuclear 4, pseudogene, humanhuman

BASIC

Gene RNU4-4P, Length 130 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-4P-201ENST00000364588 TMC2Q8TDI7 906 aa11.43□□□□□ -0.58
RNU4-4P-201ENST00000364588 TMEM92Q6UXU6 159 aa11.41□□□□□ -0.58
RNU4-4P-201ENST00000364588 PAXIP1Q6ZW49 1069 aaPredicted RBP11.41□□□□□ -0.58
RNU4-4P-201ENST00000364588 CFAP44Q96MT7 982 aa11.4□□□□□ -0.58
RNU4-4P-201ENST00000364588 C2orf72A6NCS6 295 aa11.37□□□□□ -0.59
RNU4-4P-201ENST00000364588 KIF3CO14782 793 aa11.37□□□□□ -0.59
RNU4-4P-201ENST00000364588 DOK7Q18PE1 504 aa11.36□□□□□ -0.59
RNU4-4P-201ENST00000364588 RIMBP2O15034 1052 aa11.34□□□□□ -0.59
RNU4-4P-201ENST00000364588 GPHNQ9NQX3 736 aaPredicted RBP11.34□□□□□ -0.59
RNU4-4P-201ENST00000364588 CRISPLD2Q9H0B8 497 aa11.33□□□□□ -0.6
RNU4-4P-201ENST00000364588 PDE4AP27815 886 aa11.3□□□□□ -0.6
RNU4-4P-201ENST00000364588 FOXK1P85037 733 aa11.3□□□□□ -0.6
RNU4-4P-201ENST00000364588 ZNF710Q8N1W2 664 aa11.3□□□□□ -0.6
RNU4-4P-201ENST00000364588 FAM163AQ96GL9 167 aaPredicted RBP11.3□□□□□ -0.6
RNU4-4P-201ENST00000364588 HOXB3P14651 431 aaPredicted RBP11.29□□□□□ -0.6
RNU4-4P-201ENST00000364588 ZSWIM6Q9HCJ5 1215 aa11.28□□□□□ -0.6
RNU4-4P-201ENST00000364588 NCKAP5LQ9HCH0 1330 aa11.28□□□□□ -0.6
RNU4-4P-201ENST00000364588 ST18O60284 1047 aa11.26□□□□□ -0.61
RNU4-4P-201ENST00000364588 PLCB2Q00722 1185 aa11.26□□□□□ -0.61
RNU4-4P-201ENST00000364588 DSG2Q14126 1118 aa11.25□□□□□ -0.61
RNU4-4P-201ENST00000364588 PPP1R15BQ5SWA1 713 aa11.25□□□□□ -0.61
RNU4-4P-201ENST00000364588 DDX27Q96GQ7 796 aaKnown RBP11.25□□□□□ -0.61
RNU4-4P-201ENST00000364588 MFSD10Q14728 455 aa11.24□□□□□ -0.61
RNU4-4P-201ENST00000364588 CADPS2Q86UW7 1296 aa11.24□□□□□ -0.61
RNU4-4P-201ENST00000364588 PLPP6Q8IY26 295 aa11.24□□□□□ -0.61
RNU4-4P-201ENST00000364588 SLC34A2O95436 690 aa11.23□□□□□ -0.61
RNU4-4P-201ENST00000364588 LCE2DQ5TA82 110 aaPredicted RBP11.23□□□□□ -0.61
RNU4-4P-201ENST00000364588 LARP6Q9BRS8 491 aaKnown RBP11.23□□□□□ -0.61
RNU4-4P-201ENST00000364588 HOXB1P14653 301 aaPredicted RBP11.19□□□□□ -0.62
RNU4-4P-201ENST00000364588 EMP3P54852 163 aa11.17□□□□□ -0.62
RNU4-4P-201ENST00000364588 POTEMA6NI47 508 aa11.15□□□□□ -0.62
RNU4-4P-201ENST00000364588 POTEGQ6S5H5 508 aa11.15□□□□□ -0.62
RNU4-4P-201ENST00000364588 GPR153Q6NV75 609 aa11.14□□□□□ -0.63
RNU4-4P-201ENST00000364588 PTCD2Q8WV60 388 aaKnown RBP11.14□□□□□ -0.63
RNU4-4P-201ENST00000364588 PCDHGA4Q9Y5G9 962 aa11.14□□□□□ -0.63
RNU4-4P-201ENST00000364588 TBC1D12O60347 775 aa11.13□□□□□ -0.63
RNU4-4P-201ENST00000364588 TSHZ2Q9NRE2 1034 aa11.13□□□□□ -0.63
RNU4-4P-201ENST00000364588 WDR70Q9NW82 654 aa11.13□□□□□ -0.63
RNU4-4P-201ENST00000364588 MARVELD3Q96A59 401 aa11.12□□□□□ -0.63
RNU4-4P-201ENST00000364588 ZNF316A6NFI3 1004 aaPredicted RBP11.11□□□□□ -0.63
RNU4-4P-201ENST00000364588 ARSIQ5FYB1 569 aa11.11□□□□□ -0.63
RNU4-4P-201ENST00000364588 OXER1Q8TDS5 423 aa11.1□□□□□ -0.63
RNU4-4P-201ENST00000364588 HAP1P54257 671 aaPredicted RBP11.08□□□□□ -0.64
RNU4-4P-201ENST00000364588 CAMK2BQ13554 666 aa11.08□□□□□ -0.64
RNU4-4P-201ENST00000364588 UPF1Q92900 1129 aaKnown RBP eCLIP11.08□□□□□ -0.64
RNU4-4P-201ENST00000364588 NUDT7P0C024 238 aa11.06□□□□□ -0.64
RNU4-4P-201ENST00000364588 RB1CC1Q8TDY2 1594 aa11.06□□□□□ -0.64
RNU4-4P-201ENST00000364588 ERBB3P21860 1342 aa11.06□□□□□ -0.64
RNU4-4P-201ENST00000364588 FAM205CA6NFA0 338 aa11.04□□□□□ -0.64
RNU4-4P-201ENST00000364588 E2F4Q16254 413 aa11.04□□□□□ -0.64
RNU4-4P-201ENST00000364588 KHSRPQ92945 711 aaKnown RBP eCLIP11.04□□□□□ -0.64
RNU4-4P-201ENST00000364588 HS3ST6Q96QI5 342 aa11.03□□□□□ -0.64
RNU4-4P-201ENST00000364588 EMILIN3Q9NT22 766 aa11.03□□□□□ -0.64
RNU4-4P-201ENST00000364588 PSDA5PKW4 1024 aaPredicted RBP11.02□□□□□ -0.65
RNU4-4P-201ENST00000364588 MAP3K9P80192 1104 aa11.02□□□□□ -0.65
RNU4-4P-201ENST00000364588 PCDH10Q9P2E7 1040 aa11.02□□□□□ -0.65
RNU4-4P-201ENST00000364588 VARS2Q5ST30 1063 aaKnown RBP11□□□□□ -0.65
RNU4-4P-201ENST00000364588 KDM4FA0A1W2PPD8 638 aa10.99□□□□□ -0.65
RNU4-4P-201ENST00000364588 P3H3Q8IVL6 736 aa10.99□□□□□ -0.65
RNU4-4P-201ENST00000364588 LHX6Q9UPM6 363 aa10.98□□□□□ -0.65
RNU4-4P-201ENST00000364588 EVI5O60447 810 aa10.97□□□□□ -0.65
RNU4-4P-201ENST00000364588 DPYSL4O14531 572 aa10.96□□□□□ -0.65
RNU4-4P-201ENST00000364588 ARIH1Q9Y4X5 557 aaPredicted RBP10.96□□□□□ -0.65
RNU4-4P-201ENST00000364588 NACADO15069 1562 aa10.95□□□□□ -0.66
RNU4-4P-201ENST00000364588 CDAN1Q8IWY9 1227 aa10.95□□□□□ -0.66
RNU4-4P-201ENST00000364588 PPP4R3BQ5MIZ7 849 aa10.94□□□□□ -0.66
RNU4-4P-201ENST00000364588 SPDYE16A6NNV3 312 aaPredicted RBP10.93□□□□□ -0.66
RNU4-4P-201ENST00000364588 PDIA6Q15084 440 aa10.93□□□□□ -0.66
RNU4-4P-201ENST00000364588 VSIG10Q8N0Z9 540 aa10.92□□□□□ -0.66
RNU4-4P-201ENST00000364588 ZNF687Q8N1G0 1237 aa10.92□□□□□ -0.66
RNU4-4P-201ENST00000364588 ANO8Q9HCE9 1232 aaPredicted RBP10.92□□□□□ -0.66
RNU4-4P-201ENST00000364588 POTEB3A0JP26 581 aa10.91□□□□□ -0.66
RNU4-4P-201ENST00000364588 POTEBQ6S5H4 581 aa10.91□□□□□ -0.66
RNU4-4P-201ENST00000364588 JPH4Q96JJ6 628 aa10.91□□□□□ -0.66
RNU4-4P-201ENST00000364588 PBX2P40425 430 aa10.9□□□□□ -0.66
RNU4-4P-201ENST00000364588 KCNV2Q8TDN2 545 aa10.9□□□□□ -0.66
RNU4-4P-201ENST00000364588 ARHGEF1Q92888 912 aaKnown RBP10.89□□□□□ -0.67
RNU4-4P-201ENST00000364588 ZNF454Q8N9F8 522 aa10.88□□□□□ -0.67
RNU4-4P-201ENST00000364588 FOSBP53539 338 aa10.87□□□□□ -0.67
RNU4-4P-201ENST00000364588 KCNH8Q96L42 1107 aa10.87□□□□□ -0.67
RNU4-4P-201ENST00000364588 UNC13AQ9UPW8 1703 aa10.85□□□□□ -0.67
RNU4-4P-201ENST00000364588 PHF14O94880 888 aa10.84□□□□□ -0.67
RNU4-4P-201ENST00000364588 PTGER2P43116 358 aa10.84□□□□□ -0.67
RNU4-4P-201ENST00000364588 FBXW7Q969H0 707 aa10.84□□□□□ -0.67
RNU4-4P-201ENST00000364588 KDM2AQ9Y2K7 1162 aa10.83□□□□□ -0.68
RNU4-4P-201ENST00000364588 ZDHHC16Q969W1 377 aa10.82□□□□□ -0.68
RNU4-4P-201ENST00000364588 EPAS1Q99814 870 aa10.82□□□□□ -0.68
RNU4-4P-201ENST00000364588 KRTAP3-3Q9BYR6 98 aa10.82□□□□□ -0.68
RNU4-4P-201ENST00000364588 KRTAP3-2Q9BYR7 98 aa10.82□□□□□ -0.68
RNU4-4P-201ENST00000364588 TYW1BQ6NUM6 668 aa10.81□□□□□ -0.68
RNU4-4P-201ENST00000364588 BCL2L12Q9HB09 334 aa10.81□□□□□ -0.68
RNU4-4P-201ENST00000364588 PCDHGA10Q9Y5H3 936 aa10.8□□□□□ -0.68
RNU4-4P-201ENST00000364588 ARHGAP33O14559 1287 aa10.79□□□□□ -0.68
RNU4-4P-201ENST00000364588 PTPREP23469 700 aa10.78□□□□□ -0.68
RNU4-4P-201ENST00000364588 LSM11P83369 360 aaKnown RBP eCLIP10.78□□□□□ -0.68
RNU4-4P-201ENST00000364588 DDX12PQ92771 950 aa10.78□□□□□ -0.68
RNU4-4P-201ENST00000364588 NBR1Q14596 966 aa10.77□□□□□ -0.69
RNU4-4P-201ENST00000364588 KCNK17Q96T54 332 aa10.77□□□□□ -0.69
RNU4-4P-201ENST00000364588 MYO15BQ96JP2 1530 aa10.75□□□□□ -0.69
RNU4-4P-201ENST00000364588 BICRAQ9NZM4 1560 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms