RNA–Protein interactions for RNA: ENST00000360001.10

SDF4-202, Transcript of stromal cell derived factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SDF4, Length 1,956 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-202ENST00000360001 CYB5RLQ6IPT4 315 aa34.69■■■■□ 3.14
SDF4-202ENST00000360001 DNMT1P26358 1616 aaKnown RBP34.68■■■■□ 3.14
SDF4-202ENST00000360001 MYO5CQ9NQX4 1742 aa34.68■■■■□ 3.14
SDF4-202ENST00000360001 CCER1Q8TC90 406 aaPredicted RBP34.66■■■■□ 3.14
SDF4-202ENST00000360001 ZNF777Q9ULD5 760 aaPredicted RBP34.66■■■■□ 3.14
SDF4-202ENST00000360001 SETD5Q9C0A6 1442 aa34.66■■■■□ 3.14
SDF4-202ENST00000360001 DAPK1P53355 1430 aa34.65■■■■□ 3.14
SDF4-202ENST00000360001 ABCC5O15440 1437 aa34.63■■■■□ 3.13
SDF4-202ENST00000360001 RAB3GAP2Q9H2M9 1393 aa34.62■■■■□ 3.13
SDF4-202ENST00000360001 HFM1A2PYH4 1435 aa34.59■■■■□ 3.13
SDF4-202ENST00000360001 ARHGAP5Q13017 1502 aa34.59■■■■□ 3.13
SDF4-202ENST00000360001 SAMD9LQ8IVG5 1584 aa34.59■■■■□ 3.13
SDF4-202ENST00000360001 PLCH2O75038 1416 aa34.58■■■■□ 3.13
SDF4-202ENST00000360001 ABCA9Q8IUA7 1624 aa34.57■■■■□ 3.12
SDF4-202ENST00000360001 CHIC2Q9UKJ5 165 aa34.54■■■■□ 3.12
SDF4-202ENST00000360001 NAIPQ13075 1403 aa34.54■■■■□ 3.12
SDF4-202ENST00000360001 AKNAQ7Z591 1439 aa34.53■■■■□ 3.12
SDF4-202ENST00000360001 CROCC2H7BZ55 1655 aa34.53■■■■□ 3.12
SDF4-202ENST00000360001 ARAP3Q8WWN8 1544 aa34.51■■■■□ 3.12
SDF4-202ENST00000360001 MAPKBP1O60336 1514 aa34.49■■■■□ 3.11
SDF4-202ENST00000360001 ARHGEF5Q12774 1597 aa34.49■■■■□ 3.11
SDF4-202ENST00000360001 MBD5Q9P267 1494 aa34.49■■■■□ 3.11
SDF4-202ENST00000360001 ROCK1Q13464 1354 aa34.49■■■■□ 3.11
SDF4-202ENST00000360001 GCC2Q8IWJ2 1684 aa34.48■■■■□ 3.11
SDF4-202ENST00000360001 ZEB1P37275 1124 aaPredicted RBP34.47■■■■□ 3.11
SDF4-202ENST00000360001 DHX57Q6P158 1386 aaKnown RBP34.46■■■■□ 3.11
SDF4-202ENST00000360001 RRP7BPQ9NSQ0 103 aa34.45■■■■□ 3.11
SDF4-202ENST00000360001 HNRNPMP52272 730 aaKnown RBP eCLIP34.43■■■■□ 3.19e-7■■□□□ 13.3
SDF4-202ENST00000360001 EFCAB2Q5VUJ9 269 aa34.43■■■■□ 3.1
SDF4-202ENST00000360001 PLEKHH2Q8IVE3 1493 aa34.43■■■■□ 3.1
SDF4-202ENST00000360001 SYCP2Q9BX26 1530 aa34.43■■■■□ 3.1
SDF4-202ENST00000360001 SHANK2Q9UPX8 1470 aa34.43■■■■□ 3.1
SDF4-202ENST00000360001 ADGBQ8N7X0 1667 aa34.42■■■■□ 3.1
SDF4-202ENST00000360001 KIAA1107Q9UPP5 1409 aa34.41■■■■□ 3.1
SDF4-202ENST00000360001 ADGRL2O95490 1459 aa34.4■■■■□ 3.1
SDF4-202ENST00000360001 CCDC141Q6ZP82 1450 aa34.39■■■■□ 3.1
SDF4-202ENST00000360001 ABCC1P33527 1531 aa34.37■■■■□ 3.09
SDF4-202ENST00000360001 RSPH4AQ5TD94 716 aa34.36■■■■□ 3.09
SDF4-202ENST00000360001 NCOA1Q15788 1441 aa34.36■■■■□ 3.09
SDF4-202ENST00000360001 C9orf84Q5VXU9 1444 aa34.36■■■■□ 3.09
SDF4-202ENST00000360001 ARHGEF12Q9NZN5 1544 aa34.35■■■■□ 3.09
SDF4-202ENST00000360001 FANCAO15360 1455 aa34.33■■■■□ 3.09
SDF4-202ENST00000360001 KDM6BO15054 1643 aa34.33■■■■□ 3.09
SDF4-202ENST00000360001 TSPY4P0CV99 314 aa34.31■■■■□ 3.08
SDF4-202ENST00000360001 TSPY10P0CW01 314 aa34.31■■■■□ 3.08
SDF4-202ENST00000360001 ANKRD30AQ9BXX3 1397 aa34.29■■■■□ 3.08
SDF4-202ENST00000360001 CD109Q6YHK3 1445 aa34.29■■■■□ 3.08
SDF4-202ENST00000360001 MAST1Q9Y2H9 1570 aa34.26■■■■□ 3.08
SDF4-202ENST00000360001 CLSPNQ9HAW4 1339 aa34.26■■■■□ 3.07
SDF4-202ENST00000360001 GLI2P10070 1586 aa34.23■■■■□ 3.07
SDF4-202ENST00000360001 TRAPPC8Q9Y2L5 1435 aa34.22■■■■□ 3.07
SDF4-202ENST00000360001 MAP3K4Q9Y6R4 1608 aa34.2■■■■□ 3.06
SDF4-202ENST00000360001 ADGRL1O94910 1474 aa34.18■■■■□ 3.06
SDF4-202ENST00000360001 CFAP74Q9C0B2 1584 aa34.18■■■■□ 3.06
SDF4-202ENST00000360001 DIP2BQ9P265 1576 aa34.18■■■■□ 3.06
SDF4-202ENST00000360001 KIF15Q9NS87 1388 aa34.15■■■■□ 3.06
SDF4-202ENST00000360001 SCAPERQ9BY12 1400 aa34.13■■■■□ 3.05
SDF4-202ENST00000360001 PLXNC1O60486 1568 aa34.13■■■■□ 3.05
SDF4-202ENST00000360001 ANKRD50Q9ULJ7 1429 aa34.13■■■■□ 3.05
SDF4-202ENST00000360001 ACIN1Q9UKV3 1341 aaKnown RBP34.1■■■■□ 3.05
SDF4-202ENST00000360001 AFAP1Q8N556 730 aa34.09■■■■□ 3.05
SDF4-202ENST00000360001 NEO1Q92859 1461 aa34.07■■■■□ 3.05
SDF4-202ENST00000360001 FAM69CQ0P6D2 419 aa34.07■■■■□ 3.05
SDF4-202ENST00000360001 TRIM52Q96A61 297 aa34.06■■■■□ 3.04
SDF4-202ENST00000360001 RTEL1-TNFRSF6BF6WH68 1400 aa34.04■■■■□ 3.04
SDF4-202ENST00000360001 SPAG9O60271 1321 aaKnown RBP34.04■■■■□ 3.04
SDF4-202ENST00000360001 ZFYVE16Q7Z3T8 1539 aa34.04■■■■□ 3.04
SDF4-202ENST00000360001 INO80Q9ULG1 1556 aaPredicted RBP34.01■■■■□ 3.03
SDF4-202ENST00000360001 DENND4BO75064 1496 aaPredicted RBP34■■■■□ 3.03
SDF4-202ENST00000360001 ZNF518AQ6AHZ1 1483 aa33.98■■■■□ 3.03
SDF4-202ENST00000360001 DUOX2Q9NRD8 1548 aa33.97■■■■□ 3.03
SDF4-202ENST00000360001 POGZQ7Z3K3 1410 aa33.97■■■■□ 3.03
SDF4-202ENST00000360001 ATP7AQ04656 1500 aa33.97■■■■□ 3.03
SDF4-202ENST00000360001 KIF13AQ9H1H9 1805 aa33.96■■■■□ 3.03
SDF4-202ENST00000360001 MPHOSPH9Q99550 1183 aa33.95■■■■□ 3.03
SDF4-202ENST00000360001 PPRC1Q5VV67 1664 aaKnown RBP33.94■■■■□ 3.02
SDF4-202ENST00000360001 KDM5CP41229 1560 aa33.93■■■■□ 3.02
SDF4-202ENST00000360001 PZPP20742 1482 aa33.92■■■■□ 3.02
SDF4-202ENST00000360001 TSPOAP1O95153 1857 aa33.9■■■■□ 3.02
SDF4-202ENST00000360001 ERBINQ96RT1 1412 aa33.89■■■■□ 3.02
SDF4-202ENST00000360001 KIDINS220Q9ULH0 1771 aa33.88■■■■□ 3.01
SDF4-202ENST00000360001 KDM5DQ9BY66 1539 aa33.88■■■■□ 3.01
SDF4-202ENST00000360001 SIN3AQ96ST3 1273 aa33.85■■■■□ 3.01
SDF4-202ENST00000360001 DNAJC5Q9H3Z4 198 aa33.85■■■■□ 3.01
SDF4-202ENST00000360001 SLC4A1APQ9BWU0 796 aaKnown RBP33.84■■■■□ 3.01
SDF4-202ENST00000360001 TEX14Q8IWB6 1497 aa33.84■■■■□ 3.01
SDF4-202ENST00000360001 UNC13BO14795 1591 aa33.83■■■■□ 3.01
SDF4-202ENST00000360001 MLH3Q9UHC1 1453 aa33.83■■■■□ 3.01
SDF4-202ENST00000360001 NUP155O75694 1391 aa33.83■■■■□ 3.01
SDF4-202ENST00000360001 RICTORQ6R327 1708 aa33.83■■■■□ 3.01
SDF4-202ENST00000360001 HECW2Q9P2P5 1572 aa33.81■■■■□ 3
SDF4-202ENST00000360001 RAPGEF3O95398 923 aa33.8■■■■□ 3
SDF4-202ENST00000360001 MYT1LQ9UL68 1186 aa33.8■■■■□ 3
SDF4-202ENST00000360001 NEUROD1Q13562 356 aa33.76■■■□□ 2.99
SDF4-202ENST00000360001 FOXD1Q16676 465 aa33.76■■■□□ 2.99
SDF4-202ENST00000360001 MAGI2Q86UL8 1455 aa33.76■■■□□ 2.99
SDF4-202ENST00000360001 FRMPD1Q5SYB0 1578 aa33.75■■■□□ 2.99
SDF4-202ENST00000360001 DHX29Q7Z478 1369 aaKnown RBP33.74■■■□□ 2.99
SDF4-202ENST00000360001 FAM135AQ9P2D6 1515 aa33.72■■■□□ 2.99
SDF4-202ENST00000360001 ANKRD30BQ9BXX2 1392 aa33.71■■■□□ 2.99
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms